Strain Fitness in Serratia liquefaciens MT49 around IAI46_01320

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01310 and IAI46_01315 are separated by 4 nucleotidesIAI46_01315 and IAI46_01320 overlap by 8 nucleotidesIAI46_01320 and IAI46_01325 are separated by 337 nucleotidesIAI46_01325 and IAI46_01330 are separated by 99 nucleotides IAI46_01310: IAI46_01310 - HesA/MoeB/ThiF family protein, at 288,443 to 289,192 _01310 IAI46_01315: IAI46_01315 - thiamine phosphate synthase, at 289,197 to 289,835 _01315 IAI46_01320: IAI46_01320 - phosphomethylpyrimidine synthase ThiC, at 289,828 to 291,711 _01320 IAI46_01325: IAI46_01325 - Rsd/AlgQ family anti-sigma factor, at 292,049 to 292,552 _01325 IAI46_01330: IAI46_01330 - NAD(+) diphosphatase, at 292,652 to 293,419 _01330 Position (kb) 289 290 291 292Strain fitness (log2 ratio) -2 -1 0 1at 288.917 kb on + strand, within IAI46_01310at 288.918 kb on - strand, within IAI46_01310at 289.006 kb on + strand, within IAI46_01310at 289.006 kb on + strand, within IAI46_01310at 289.007 kb on - strand, within IAI46_01310at 289.030 kb on + strand, within IAI46_01310at 289.030 kb on + strand, within IAI46_01310at 289.053 kb on + strand, within IAI46_01310at 289.053 kb on + strand, within IAI46_01310at 289.054 kb on - strand, within IAI46_01310at 289.073 kb on + strand, within IAI46_01310at 289.073 kb on + strand, within IAI46_01310at 289.074 kb on - strand, within IAI46_01310at 289.074 kb on - strand, within IAI46_01310at 289.074 kb on - strand, within IAI46_01310at 289.139 kb on - strandat 289.164 kb on + strandat 289.164 kb on + strandat 289.263 kb on - strand, within IAI46_01315at 289.286 kb on + strand, within IAI46_01315at 289.286 kb on + strand, within IAI46_01315at 289.286 kb on + strand, within IAI46_01315at 289.325 kb on + strand, within IAI46_01315at 289.439 kb on + strand, within IAI46_01315at 289.439 kb on + strand, within IAI46_01315at 289.439 kb on + strand, within IAI46_01315at 289.456 kb on + strand, within IAI46_01315at 289.456 kb on + strand, within IAI46_01315at 289.456 kb on + strand, within IAI46_01315at 289.456 kb on + strand, within IAI46_01315at 289.457 kb on - strand, within IAI46_01315at 289.457 kb on - strand, within IAI46_01315at 289.457 kb on - strand, within IAI46_01315at 289.581 kb on + strand, within IAI46_01315at 289.581 kb on + strand, within IAI46_01315at 289.582 kb on - strand, within IAI46_01315at 289.588 kb on + strand, within IAI46_01315at 289.588 kb on + strand, within IAI46_01315at 289.588 kb on + strand, within IAI46_01315at 289.588 kb on + strand, within IAI46_01315at 289.589 kb on - strand, within IAI46_01315at 289.602 kb on - strand, within IAI46_01315at 289.618 kb on + strand, within IAI46_01315at 289.628 kb on + strand, within IAI46_01315at 289.628 kb on + strand, within IAI46_01315at 289.645 kb on + strand, within IAI46_01315at 289.652 kb on + strand, within IAI46_01315at 289.652 kb on + strand, within IAI46_01315at 289.731 kb on - strand, within IAI46_01315at 289.731 kb on - strand, within IAI46_01315at 289.783 kb on + strandat 289.784 kb on - strandat 289.786 kb on - strandat 289.826 kb on + strandat 289.826 kb on + strandat 289.826 kb on + strandat 289.872 kb on - strandat 289.872 kb on - strandat 289.930 kb on + strandat 289.930 kb on + strandat 289.930 kb on + strandat 289.930 kb on + strandat 289.930 kb on + strandat 289.931 kb on - strandat 289.931 kb on - strandat 289.936 kb on + strandat 289.967 kb on + strandat 289.968 kb on - strandat 289.968 kb on - strandat 289.976 kb on - strandat 290.283 kb on - strand, within IAI46_01320at 290.387 kb on + strand, within IAI46_01320at 290.388 kb on - strand, within IAI46_01320at 290.452 kb on + strand, within IAI46_01320at 290.452 kb on + strand, within IAI46_01320at 290.453 kb on - strand, within IAI46_01320at 290.489 kb on + strand, within IAI46_01320at 290.489 kb on + strand, within IAI46_01320at 290.609 kb on + strand, within IAI46_01320at 290.649 kb on - strand, within IAI46_01320at 290.685 kb on + strand, within IAI46_01320at 290.685 kb on + strand, within IAI46_01320at 290.685 kb on + strand, within IAI46_01320at 290.686 kb on - strand, within IAI46_01320at 290.743 kb on + strand, within IAI46_01320at 290.744 kb on - strand, within IAI46_01320at 290.748 kb on - strand, within IAI46_01320at 290.759 kb on - strand, within IAI46_01320at 290.780 kb on + strand, within IAI46_01320at 290.780 kb on + strand, within IAI46_01320at 290.810 kb on - strand, within IAI46_01320at 290.810 kb on - strand, within IAI46_01320at 290.815 kb on - strand, within IAI46_01320at 290.876 kb on + strand, within IAI46_01320at 290.877 kb on - strand, within IAI46_01320at 290.877 kb on - strand, within IAI46_01320at 290.880 kb on + strand, within IAI46_01320at 290.880 kb on + strand, within IAI46_01320at 290.881 kb on - strand, within IAI46_01320at 290.881 kb on - strand, within IAI46_01320at 290.881 kb on - strand, within IAI46_01320at 290.881 kb on - strand, within IAI46_01320at 290.940 kb on + strand, within IAI46_01320at 290.940 kb on + strand, within IAI46_01320at 290.940 kb on + strand, within IAI46_01320at 290.943 kb on - strand, within IAI46_01320at 290.971 kb on - strand, within IAI46_01320at 291.057 kb on + strand, within IAI46_01320at 291.058 kb on - strand, within IAI46_01320at 291.295 kb on + strand, within IAI46_01320at 291.311 kb on + strand, within IAI46_01320at 291.464 kb on - strand, within IAI46_01320at 291.484 kb on + strand, within IAI46_01320at 291.504 kb on + strand, within IAI46_01320at 291.504 kb on + strand, within IAI46_01320at 291.504 kb on + strand, within IAI46_01320at 291.504 kb on + strand, within IAI46_01320at 291.504 kb on + strand, within IAI46_01320at 291.505 kb on - strand, within IAI46_01320at 291.545 kb on + strandat 291.545 kb on + strandat 291.546 kb on - strandat 291.546 kb on - strandat 291.548 kb on - strandat 291.572 kb on + strandat 291.573 kb on - strandat 291.573 kb on - strandat 291.665 kb on + strandat 291.741 kb on + strandat 291.771 kb on + strandat 291.771 kb on + strandat 291.771 kb on + strandat 291.772 kb on - strandat 291.782 kb on + strandat 291.831 kb on + strandat 291.831 kb on + strandat 291.831 kb on + strandat 291.832 kb on - strandat 291.832 kb on - strandat 291.889 kb on + strandat 291.889 kb on + strandat 291.890 kb on - strandat 291.890 kb on - strandat 291.894 kb on + strandat 291.894 kb on + strandat 291.894 kb on + strandat 291.895 kb on - strandat 291.895 kb on - strandat 291.915 kb on + strandat 291.990 kb on + strandat 292.017 kb on - strandat 292.017 kb on - strandat 292.017 kb on - strandat 292.017 kb on - strandat 292.018 kb on + strandat 292.018 kb on + strandat 292.018 kb on + strandat 292.018 kb on + strandat 292.019 kb on - strandat 292.120 kb on + strand, within IAI46_01325at 292.121 kb on - strand, within IAI46_01325at 292.121 kb on - strand, within IAI46_01325at 292.217 kb on - strand, within IAI46_01325at 292.218 kb on + strand, within IAI46_01325at 292.218 kb on + strand, within IAI46_01325at 292.218 kb on + strand, within IAI46_01325at 292.237 kb on + strand, within IAI46_01325at 292.270 kb on - strand, within IAI46_01325at 292.325 kb on - strand, within IAI46_01325at 292.335 kb on + strand, within IAI46_01325at 292.335 kb on + strand, within IAI46_01325at 292.335 kb on + strand, within IAI46_01325at 292.335 kb on + strand, within IAI46_01325at 292.336 kb on - strand, within IAI46_01325at 292.336 kb on - strand, within IAI46_01325at 292.336 kb on - strand, within IAI46_01325at 292.362 kb on + strand, within IAI46_01325at 292.375 kb on + strand, within IAI46_01325at 292.375 kb on + strand, within IAI46_01325at 292.414 kb on + strand, within IAI46_01325at 292.414 kb on + strand, within IAI46_01325at 292.415 kb on - strand, within IAI46_01325at 292.415 kb on - strand, within IAI46_01325at 292.427 kb on - strand, within IAI46_01325at 292.438 kb on + strand, within IAI46_01325at 292.500 kb on - strand, within IAI46_01325at 292.500 kb on - strand, within IAI46_01325at 292.507 kb on + strandat 292.507 kb on + strandat 292.508 kb on - strandat 292.508 kb on - strandat 292.510 kb on + strandat 292.511 kb on - strandat 292.511 kb on - strandat 292.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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288,917 + IAI46_01310 0.63 -0.3
288,918 - IAI46_01310 0.63 -1.7
289,006 + IAI46_01310 0.75 +0.0
289,006 + IAI46_01310 0.75 +0.0
289,007 - IAI46_01310 0.75 +1.0
289,030 + IAI46_01310 0.78 -0.6
289,030 + IAI46_01310 0.78 -1.1
289,053 + IAI46_01310 0.81 +0.7
289,053 + IAI46_01310 0.81 -0.1
289,054 - IAI46_01310 0.81 -1.0
289,073 + IAI46_01310 0.84 +0.6
289,073 + IAI46_01310 0.84 +0.6
289,074 - IAI46_01310 0.84 +0.4
289,074 - IAI46_01310 0.84 +0.1
289,074 - IAI46_01310 0.84 -0.1
289,139 - -0.1
289,164 + -0.8
289,164 + -1.4
289,263 - IAI46_01315 0.10 -0.9
289,286 + IAI46_01315 0.14 +1.0
289,286 + IAI46_01315 0.14 +0.9
289,286 + IAI46_01315 0.14 +0.2
289,325 + IAI46_01315 0.20 +0.8
289,439 + IAI46_01315 0.38 +0.2
289,439 + IAI46_01315 0.38 -1.2
289,439 + IAI46_01315 0.38 +1.2
289,456 + IAI46_01315 0.41 +0.4
289,456 + IAI46_01315 0.41 +0.1
289,456 + IAI46_01315 0.41 +0.5
289,456 + IAI46_01315 0.41 +0.5
289,457 - IAI46_01315 0.41 -0.3
289,457 - IAI46_01315 0.41 +0.4
289,457 - IAI46_01315 0.41 -0.1
289,581 + IAI46_01315 0.60 +0.4
289,581 + IAI46_01315 0.60 +0.3
289,582 - IAI46_01315 0.60 +1.1
289,588 + IAI46_01315 0.61 +0.3
289,588 + IAI46_01315 0.61 -0.5
289,588 + IAI46_01315 0.61 +0.2
289,588 + IAI46_01315 0.61 -0.6
289,589 - IAI46_01315 0.61 +0.2
289,602 - IAI46_01315 0.63 -0.9
289,618 + IAI46_01315 0.66 +0.0
289,628 + IAI46_01315 0.67 +0.9
289,628 + IAI46_01315 0.67 +0.5
289,645 + IAI46_01315 0.70 +0.1
289,652 + IAI46_01315 0.71 +0.7
289,652 + IAI46_01315 0.71 -1.4
289,731 - IAI46_01315 0.84 +0.6
289,731 - IAI46_01315 0.84 -0.7
289,783 + -0.4
289,784 - -0.8
289,786 - -0.1
289,826 + +0.2
289,826 + -0.2
289,826 + +0.8
289,872 - -1.6
289,872 - -0.4
289,930 + +0.5
289,930 + -1.5
289,930 + +1.5
289,930 + +0.0
289,930 + -0.2
289,931 - -1.6
289,931 - +0.2
289,936 + -0.1
289,967 + -0.3
289,968 - -0.0
289,968 - -0.6
289,976 - -0.1
290,283 - IAI46_01320 0.24 -0.0
290,387 + IAI46_01320 0.30 -1.2
290,388 - IAI46_01320 0.30 -0.7
290,452 + IAI46_01320 0.33 -0.7
290,452 + IAI46_01320 0.33 +0.3
290,453 - IAI46_01320 0.33 +0.4
290,489 + IAI46_01320 0.35 -0.0
290,489 + IAI46_01320 0.35 -0.4
290,609 + IAI46_01320 0.41 -0.2
290,649 - IAI46_01320 0.44 -0.1
290,685 + IAI46_01320 0.45 -1.4
290,685 + IAI46_01320 0.45 -0.1
290,685 + IAI46_01320 0.45 +0.1
290,686 - IAI46_01320 0.46 -1.5
290,743 + IAI46_01320 0.49 -0.4
290,744 - IAI46_01320 0.49 +0.5
290,748 - IAI46_01320 0.49 -0.2
290,759 - IAI46_01320 0.49 +1.0
290,780 + IAI46_01320 0.51 +0.5
290,780 + IAI46_01320 0.51 -0.3
290,810 - IAI46_01320 0.52 +0.5
290,810 - IAI46_01320 0.52 -0.3
290,815 - IAI46_01320 0.52 +0.4
290,876 + IAI46_01320 0.56 -0.5
290,877 - IAI46_01320 0.56 -0.6
290,877 - IAI46_01320 0.56 -0.2
290,880 + IAI46_01320 0.56 -0.2
290,880 + IAI46_01320 0.56 -0.4
290,881 - IAI46_01320 0.56 +0.6
290,881 - IAI46_01320 0.56 -0.3
290,881 - IAI46_01320 0.56 -0.4
290,881 - IAI46_01320 0.56 +0.2
290,940 + IAI46_01320 0.59 +0.1
290,940 + IAI46_01320 0.59 +0.1
290,940 + IAI46_01320 0.59 -0.4
290,943 - IAI46_01320 0.59 -0.4
290,971 - IAI46_01320 0.61 +0.2
291,057 + IAI46_01320 0.65 -0.0
291,058 - IAI46_01320 0.65 -1.2
291,295 + IAI46_01320 0.78 -0.2
291,311 + IAI46_01320 0.79 +0.2
291,464 - IAI46_01320 0.87 +0.8
291,484 + IAI46_01320 0.88 +0.4
291,504 + IAI46_01320 0.89 -0.5
291,504 + IAI46_01320 0.89 +0.3
291,504 + IAI46_01320 0.89 +0.4
291,504 + IAI46_01320 0.89 -0.3
291,504 + IAI46_01320 0.89 -0.8
291,505 - IAI46_01320 0.89 -0.3
291,545 + -0.1
291,545 + +0.6
291,546 - -0.2
291,546 - -0.1
291,548 - -0.4
291,572 + +0.2
291,573 - -0.1
291,573 - +0.0
291,665 + +0.6
291,741 + -0.3
291,771 + -0.7
291,771 + -0.0
291,771 + -1.1
291,772 - -1.4
291,782 + -1.2
291,831 + +0.2
291,831 + -0.3
291,831 + -0.0
291,832 - -0.3
291,832 - -0.2
291,889 + -1.2
291,889 + +0.2
291,890 - +0.0
291,890 - +0.5
291,894 + +0.2
291,894 + +0.1
291,894 + +1.1
291,895 - +0.4
291,895 - -1.1
291,915 + -0.3
291,990 + +0.5
292,017 - -0.1
292,017 - +0.4
292,017 - -0.5
292,017 - -0.2
292,018 + -0.4
292,018 + +1.2
292,018 + -0.3
292,018 + +1.1
292,019 - -0.5
292,120 + IAI46_01325 0.14 -0.3
292,121 - IAI46_01325 0.14 +0.7
292,121 - IAI46_01325 0.14 +1.0
292,217 - IAI46_01325 0.33 +0.2
292,218 + IAI46_01325 0.34 -0.9
292,218 + IAI46_01325 0.34 -0.5
292,218 + IAI46_01325 0.34 -0.4
292,237 + IAI46_01325 0.37 -0.5
292,270 - IAI46_01325 0.44 +0.4
292,325 - IAI46_01325 0.55 -0.8
292,335 + IAI46_01325 0.57 +0.2
292,335 + IAI46_01325 0.57 -0.1
292,335 + IAI46_01325 0.57 -0.7
292,335 + IAI46_01325 0.57 +0.1
292,336 - IAI46_01325 0.57 +0.5
292,336 - IAI46_01325 0.57 +0.7
292,336 - IAI46_01325 0.57 +1.0
292,362 + IAI46_01325 0.62 +0.7
292,375 + IAI46_01325 0.65 -0.1
292,375 + IAI46_01325 0.65 +0.7
292,414 + IAI46_01325 0.72 +0.6
292,414 + IAI46_01325 0.72 +0.8
292,415 - IAI46_01325 0.73 -0.1
292,415 - IAI46_01325 0.73 -0.1
292,427 - IAI46_01325 0.75 -0.0
292,438 + IAI46_01325 0.77 -0.4
292,500 - IAI46_01325 0.89 -1.1
292,500 - IAI46_01325 0.89 +1.2
292,507 + +0.2
292,507 + +1.4
292,508 - -2.1
292,508 - +0.5
292,510 + +1.6
292,511 - +1.6
292,511 - +0.4
292,569 - -0.5

Or see this region's nucleotide sequence