Strain Fitness in Serratia liquefaciens MT49 around IAI46_01155

Experiment: No stress control, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_01150 and IAI46_01155 are separated by 22 nucleotidesIAI46_01155 and IAI46_01160 are separated by 451 nucleotides IAI46_01150: IAI46_01150 - Trk system potassium transporter TrkH, at 255,607 to 257,058 _01150 IAI46_01155: IAI46_01155 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 257,081 to 257,614 _01155 IAI46_01160: IAI46_01160 - 16S ribosomal RNA, at 258,066 to 259,610 _01160 Position (kb) 257 258Strain fitness (log2 ratio) -2 -1 0 1at 256.087 kb on + strand, within IAI46_01150at 256.171 kb on + strand, within IAI46_01150at 256.171 kb on + strand, within IAI46_01150at 256.172 kb on - strand, within IAI46_01150at 256.238 kb on + strand, within IAI46_01150at 256.238 kb on + strand, within IAI46_01150at 256.239 kb on - strand, within IAI46_01150at 256.245 kb on + strand, within IAI46_01150at 256.246 kb on - strand, within IAI46_01150at 256.246 kb on - strand, within IAI46_01150at 256.278 kb on + strand, within IAI46_01150at 256.304 kb on - strand, within IAI46_01150at 256.329 kb on + strand, within IAI46_01150at 256.329 kb on + strand, within IAI46_01150at 256.329 kb on + strand, within IAI46_01150at 256.329 kb on + strand, within IAI46_01150at 256.330 kb on - strand, within IAI46_01150at 256.330 kb on - strand, within IAI46_01150at 256.330 kb on - strand, within IAI46_01150at 256.336 kb on - strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.360 kb on - strand, within IAI46_01150at 256.360 kb on - strand, within IAI46_01150at 256.360 kb on - strand, within IAI46_01150at 256.360 kb on - strand, within IAI46_01150at 256.363 kb on + strand, within IAI46_01150at 256.364 kb on - strand, within IAI46_01150at 256.478 kb on + strand, within IAI46_01150at 256.478 kb on + strand, within IAI46_01150at 256.478 kb on + strand, within IAI46_01150at 256.569 kb on + strand, within IAI46_01150at 256.570 kb on - strand, within IAI46_01150at 256.693 kb on + strand, within IAI46_01150at 256.694 kb on - strand, within IAI46_01150at 256.716 kb on - strand, within IAI46_01150at 256.734 kb on + strand, within IAI46_01150at 256.751 kb on + strand, within IAI46_01150at 256.947 kb on + strandat 256.947 kb on + strandat 256.948 kb on - strandat 256.948 kb on - strandat 256.948 kb on - strandat 256.951 kb on - strandat 256.951 kb on - strandat 257.016 kb on + strandat 257.065 kb on + strandat 257.065 kb on + strandat 257.065 kb on + strandat 257.065 kb on + strandat 257.597 kb on - strandat 257.603 kb on + strandat 257.604 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
remove
256,087 + IAI46_01150 0.33 -0.6
256,171 + IAI46_01150 0.39 +1.0
256,171 + IAI46_01150 0.39 -0.4
256,172 - IAI46_01150 0.39 +0.3
256,238 + IAI46_01150 0.43 -0.6
256,238 + IAI46_01150 0.43 +1.1
256,239 - IAI46_01150 0.44 +0.8
256,245 + IAI46_01150 0.44 +0.8
256,246 - IAI46_01150 0.44 -0.4
256,246 - IAI46_01150 0.44 +0.5
256,278 + IAI46_01150 0.46 +0.7
256,304 - IAI46_01150 0.48 +1.2
256,329 + IAI46_01150 0.50 +0.8
256,329 + IAI46_01150 0.50 +0.5
256,329 + IAI46_01150 0.50 -0.1
256,329 + IAI46_01150 0.50 -0.1
256,330 - IAI46_01150 0.50 +0.7
256,330 - IAI46_01150 0.50 -0.3
256,330 - IAI46_01150 0.50 -0.6
256,336 - IAI46_01150 0.50 -0.3
256,359 + IAI46_01150 0.52 -0.2
256,359 + IAI46_01150 0.52 +0.5
256,359 + IAI46_01150 0.52 +0.8
256,359 + IAI46_01150 0.52 +0.6
256,359 + IAI46_01150 0.52 +0.4
256,359 + IAI46_01150 0.52 -1.3
256,360 - IAI46_01150 0.52 +0.3
256,360 - IAI46_01150 0.52 -0.3
256,360 - IAI46_01150 0.52 +0.3
256,360 - IAI46_01150 0.52 +1.1
256,363 + IAI46_01150 0.52 -0.3
256,364 - IAI46_01150 0.52 +0.2
256,478 + IAI46_01150 0.60 -0.0
256,478 + IAI46_01150 0.60 -0.6
256,478 + IAI46_01150 0.60 -2.1
256,569 + IAI46_01150 0.66 +0.0
256,570 - IAI46_01150 0.66 -0.1
256,693 + IAI46_01150 0.75 -0.5
256,694 - IAI46_01150 0.75 +0.2
256,716 - IAI46_01150 0.76 +0.3
256,734 + IAI46_01150 0.78 -0.7
256,751 + IAI46_01150 0.79 -0.6
256,947 + +0.7
256,947 + +0.1
256,948 - +0.2
256,948 - +0.9
256,948 - -0.3
256,951 - -0.1
256,951 - -1.7
257,016 + -1.5
257,065 + -0.4
257,065 + -0.0
257,065 + -1.6
257,065 + +0.3
257,597 - +0.7
257,603 + -0.9
257,604 - -0.3

Or see this region's nucleotide sequence