Strain Fitness in Serratia liquefaciens MT49 around IAI46_00725

Experiment: No stress control, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_00715 and IAI46_00720 overlap by 4 nucleotidesIAI46_00720 and IAI46_00725 overlap by 4 nucleotidesIAI46_00725 and IAI46_00730 overlap by 1 nucleotidesIAI46_00730 and IAI46_00735 are separated by 77 nucleotides IAI46_00715: IAI46_00715 - diaminopimelate epimerase, at 164,088 to 164,912 _00715 IAI46_00720: IAI46_00720 - DUF484 domain-containing protein, at 164,909 to 165,613 _00720 IAI46_00725: IAI46_00725 - tyrosine recombinase XerC, at 165,610 to 166,521 _00725 IAI46_00730: IAI46_00730 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 166,521 to 167,237 _00730 IAI46_00735: IAI46_00735 - DNA helicase II, at 167,315 to 169,477 _00735 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1at 164.900 kb on + strandat 164.908 kb on + strandat 164.908 kb on + strandat 165.057 kb on + strand, within IAI46_00720at 165.091 kb on + strand, within IAI46_00720at 165.091 kb on + strand, within IAI46_00720at 165.126 kb on + strand, within IAI46_00720at 165.217 kb on + strand, within IAI46_00720at 165.217 kb on + strand, within IAI46_00720at 165.217 kb on + strand, within IAI46_00720at 165.357 kb on + strand, within IAI46_00720at 165.527 kb on + strand, within IAI46_00720at 165.527 kb on + strand, within IAI46_00720at 165.528 kb on - strand, within IAI46_00720at 165.556 kb on + strandat 165.557 kb on - strandat 166.032 kb on + strand, within IAI46_00725at 166.033 kb on - strand, within IAI46_00725at 166.049 kb on - strand, within IAI46_00725at 166.049 kb on - strand, within IAI46_00725at 166.369 kb on - strand, within IAI46_00725at 166.369 kb on - strand, within IAI46_00725at 166.369 kb on - strand, within IAI46_00725at 166.444 kb on + strandat 166.445 kb on - strandat 166.480 kb on + strandat 166.530 kb on + strandat 166.531 kb on - strandat 166.584 kb on + strandat 166.644 kb on + strand, within IAI46_00730at 166.645 kb on - strand, within IAI46_00730at 166.702 kb on + strand, within IAI46_00730at 166.703 kb on - strand, within IAI46_00730at 166.725 kb on + strand, within IAI46_00730at 166.725 kb on + strand, within IAI46_00730at 166.872 kb on - strand, within IAI46_00730at 166.965 kb on + strand, within IAI46_00730at 166.965 kb on + strand, within IAI46_00730at 166.966 kb on - strand, within IAI46_00730at 167.025 kb on + strand, within IAI46_00730at 167.025 kb on + strand, within IAI46_00730at 167.025 kb on + strand, within IAI46_00730at 167.025 kb on + strand, within IAI46_00730at 167.025 kb on + strand, within IAI46_00730at 167.026 kb on - strand, within IAI46_00730at 167.026 kb on - strand, within IAI46_00730at 167.026 kb on - strand, within IAI46_00730at 167.026 kb on - strand, within IAI46_00730at 167.026 kb on - strand, within IAI46_00730at 167.066 kb on + strand, within IAI46_00730at 167.067 kb on - strand, within IAI46_00730at 167.067 kb on - strand, within IAI46_00730at 167.090 kb on - strand, within IAI46_00730at 167.090 kb on - strand, within IAI46_00730at 167.195 kb on + strandat 167.195 kb on + strandat 167.196 kb on - strandat 167.196 kb on - strandat 167.196 kb on - strandat 167.196 kb on - strandat 167.233 kb on + strandat 167.234 kb on - strandat 167.234 kb on - strandat 167.234 kb on - strandat 167.235 kb on + strandat 167.236 kb on - strandat 167.257 kb on + strandat 167.257 kb on + strandat 167.304 kb on + strandat 167.304 kb on + strandat 167.305 kb on - strandat 167.315 kb on - strandat 167.417 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
remove
164,900 + +0.5
164,908 + +1.0
164,908 + +1.0
165,057 + IAI46_00720 0.21 -0.2
165,091 + IAI46_00720 0.26 +0.5
165,091 + IAI46_00720 0.26 -0.8
165,126 + IAI46_00720 0.31 +1.2
165,217 + IAI46_00720 0.44 +0.2
165,217 + IAI46_00720 0.44 +0.1
165,217 + IAI46_00720 0.44 -0.1
165,357 + IAI46_00720 0.64 +1.4
165,527 + IAI46_00720 0.88 +0.6
165,527 + IAI46_00720 0.88 +0.5
165,528 - IAI46_00720 0.88 +0.5
165,556 + +0.9
165,557 - -0.8
166,032 + IAI46_00725 0.46 -1.3
166,033 - IAI46_00725 0.46 +0.5
166,049 - IAI46_00725 0.48 +0.9
166,049 - IAI46_00725 0.48 -0.8
166,369 - IAI46_00725 0.83 -0.3
166,369 - IAI46_00725 0.83 +0.5
166,369 - IAI46_00725 0.83 +1.2
166,444 + +0.3
166,445 - -0.1
166,480 + +0.2
166,530 + +0.1
166,531 - -1.4
166,584 + -0.1
166,644 + IAI46_00730 0.17 +0.3
166,645 - IAI46_00730 0.17 -1.0
166,702 + IAI46_00730 0.25 -0.4
166,703 - IAI46_00730 0.25 +0.1
166,725 + IAI46_00730 0.28 +0.0
166,725 + IAI46_00730 0.28 -0.6
166,872 - IAI46_00730 0.49 -0.3
166,965 + IAI46_00730 0.62 -0.1
166,965 + IAI46_00730 0.62 +0.2
166,966 - IAI46_00730 0.62 +0.8
167,025 + IAI46_00730 0.70 +0.3
167,025 + IAI46_00730 0.70 -0.9
167,025 + IAI46_00730 0.70 +0.0
167,025 + IAI46_00730 0.70 -0.9
167,025 + IAI46_00730 0.70 -0.6
167,026 - IAI46_00730 0.70 -0.7
167,026 - IAI46_00730 0.70 -1.0
167,026 - IAI46_00730 0.70 +0.8
167,026 - IAI46_00730 0.70 -0.6
167,026 - IAI46_00730 0.70 +0.5
167,066 + IAI46_00730 0.76 -0.3
167,067 - IAI46_00730 0.76 +0.5
167,067 - IAI46_00730 0.76 -0.1
167,090 - IAI46_00730 0.79 -0.1
167,090 - IAI46_00730 0.79 -0.1
167,195 + -0.7
167,195 + -0.2
167,196 - -1.8
167,196 - +0.6
167,196 - -0.9
167,196 - -0.4
167,233 + -0.1
167,234 - +0.5
167,234 - +0.3
167,234 - +0.0
167,235 + +0.9
167,236 - -2.0
167,257 + -0.1
167,257 + +0.3
167,304 + +0.7
167,304 + -0.6
167,305 - -1.2
167,315 - -1.1
167,417 - -1.3

Or see this region's nucleotide sequence