Experiment: No stress control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00420 and IAI46_00425 are separated by 157 nucleotides IAI46_00425 and IAI46_00430 are separated by 223 nucleotides IAI46_00430 and IAI46_00435 are separated by 365 nucleotides IAI46_00435 and IAI46_00440 overlap by 1 nucleotides
IAI46_00420: IAI46_00420 - MarR family transcriptional regulator, at 95,693 to 96,157
_00420
IAI46_00425: IAI46_00425 - organic hydroperoxide resistance protein, at 96,315 to 96,740
_00425
IAI46_00430: IAI46_00430 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 96,964 to 98,658
_00430
IAI46_00435: IAI46_00435 - transcriptional regulator UhpA, at 99,024 to 99,614
_00435
IAI46_00440: IAI46_00440 - signal transduction histidine-protein kinase/phosphatase UhpB, at 99,614 to 101,149
_00440
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 96.103 kb on + strand, within IAI46_00420 at 96.104 kb on - strand, within IAI46_00420 at 96.107 kb on - strand, within IAI46_00420 at 96.144 kb on + strand at 96.144 kb on + strand at 96.145 kb on - strand at 96.195 kb on + strand at 96.195 kb on + strand at 96.195 kb on + strand at 96.282 kb on + strand at 96.314 kb on + strand at 96.315 kb on - strand at 96.456 kb on - strand, within IAI46_00425 at 96.691 kb on - strand, within IAI46_00425 at 96.691 kb on - strand, within IAI46_00425 at 96.713 kb on + strand at 96.713 kb on + strand at 96.714 kb on - strand at 96.714 kb on - strand at 96.714 kb on - strand at 96.714 kb on - strand at 96.721 kb on + strand at 96.721 kb on + strand at 96.734 kb on + strand at 96.734 kb on + strand at 96.735 kb on - strand at 96.735 kb on - strand at 96.735 kb on - strand at 96.775 kb on + strand at 96.775 kb on + strand at 96.775 kb on + strand at 96.775 kb on + strand at 96.776 kb on - strand at 96.776 kb on - strand at 96.776 kb on - strand at 96.776 kb on - strand at 96.778 kb on + strand at 96.778 kb on + strand at 96.779 kb on - strand at 96.779 kb on - strand at 96.779 kb on - strand at 96.809 kb on + strand at 96.809 kb on + strand at 96.810 kb on - strand at 96.810 kb on - strand at 96.862 kb on + strand at 96.862 kb on + strand at 96.863 kb on - strand at 96.865 kb on + strand at 96.866 kb on - strand at 96.883 kb on + strand at 96.883 kb on + strand at 96.884 kb on - strand at 96.961 kb on + strand at 96.962 kb on - strand at 96.962 kb on - strand at 96.975 kb on + strand at 96.976 kb on - strand at 96.998 kb on + strand at 96.999 kb on - strand at 97.004 kb on + strand at 97.019 kb on - strand at 97.052 kb on - strand at 97.052 kb on - strand at 97.092 kb on + strand at 97.092 kb on + strand at 97.093 kb on - strand at 97.093 kb on - strand at 97.137 kb on + strand, within IAI46_00430 at 97.138 kb on - strand, within IAI46_00430 at 97.184 kb on - strand, within IAI46_00430 at 97.188 kb on + strand, within IAI46_00430 at 97.202 kb on + strand, within IAI46_00430 at 97.203 kb on - strand, within IAI46_00430 at 97.203 kb on - strand, within IAI46_00430 at 97.203 kb on - strand, within IAI46_00430 at 97.231 kb on + strand, within IAI46_00430 at 97.232 kb on - strand, within IAI46_00430 at 97.232 kb on - strand, within IAI46_00430 at 97.234 kb on + strand, within IAI46_00430 at 97.234 kb on + strand, within IAI46_00430 at 97.235 kb on - strand, within IAI46_00430 at 97.235 kb on - strand, within IAI46_00430 at 97.235 kb on - strand, within IAI46_00430 at 97.235 kb on - strand, within IAI46_00430 at 97.334 kb on + strand, within IAI46_00430 at 97.335 kb on - strand, within IAI46_00430 at 97.335 kb on - strand, within IAI46_00430 at 97.335 kb on - strand, within IAI46_00430 at 97.335 kb on - strand, within IAI46_00430 at 97.491 kb on + strand, within IAI46_00430 at 97.491 kb on + strand, within IAI46_00430 at 97.491 kb on + strand, within IAI46_00430 at 97.491 kb on + strand, within IAI46_00430 at 97.492 kb on - strand, within IAI46_00430 at 97.492 kb on - strand, within IAI46_00430 at 97.549 kb on + strand, within IAI46_00430 at 97.549 kb on + strand, within IAI46_00430 at 97.549 kb on + strand, within IAI46_00430 at 97.550 kb on - strand, within IAI46_00430 at 97.550 kb on - strand, within IAI46_00430 at 97.560 kb on - strand, within IAI46_00430 at 97.560 kb on - strand, within IAI46_00430 at 97.573 kb on + strand, within IAI46_00430 at 97.573 kb on + strand, within IAI46_00430 at 97.616 kb on - strand, within IAI46_00430 at 97.616 kb on - strand, within IAI46_00430 at 97.674 kb on + strand, within IAI46_00430 at 97.674 kb on + strand, within IAI46_00430 at 97.674 kb on + strand, within IAI46_00430 at 97.675 kb on - strand, within IAI46_00430 at 97.675 kb on - strand, within IAI46_00430 at 97.675 kb on - strand, within IAI46_00430 at 97.678 kb on + strand, within IAI46_00430 at 97.678 kb on + strand, within IAI46_00430 at 97.678 kb on + strand, within IAI46_00430 at 97.678 kb on + strand, within IAI46_00430 at 97.678 kb on + strand, within IAI46_00430 at 97.678 kb on + strand, within IAI46_00430 at 97.679 kb on - strand, within IAI46_00430 at 97.708 kb on + strand, within IAI46_00430 at 97.708 kb on + strand, within IAI46_00430 at 97.708 kb on + strand, within IAI46_00430 at 97.708 kb on + strand, within IAI46_00430 at 97.708 kb on + strand, within IAI46_00430 at 97.708 kb on + strand, within IAI46_00430 at 97.709 kb on - strand, within IAI46_00430 at 97.709 kb on - strand, within IAI46_00430 at 97.709 kb on - strand, within IAI46_00430 at 97.719 kb on + strand, within IAI46_00430 at 97.719 kb on + strand, within IAI46_00430 at 97.719 kb on + strand, within IAI46_00430 at 97.720 kb on - strand, within IAI46_00430 at 97.722 kb on + strand, within IAI46_00430 at 97.884 kb on + strand, within IAI46_00430 at 97.884 kb on + strand, within IAI46_00430 at 97.885 kb on - strand, within IAI46_00430 at 97.905 kb on + strand, within IAI46_00430 at 97.905 kb on + strand, within IAI46_00430 at 97.906 kb on - strand, within IAI46_00430 at 97.906 kb on - strand, within IAI46_00430 at 97.906 kb on - strand, within IAI46_00430 at 97.906 kb on - strand, within IAI46_00430 at 97.906 kb on - strand, within IAI46_00430 at 97.993 kb on + strand, within IAI46_00430 at 97.993 kb on + strand, within IAI46_00430 at 97.993 kb on + strand, within IAI46_00430 at 97.994 kb on - strand, within IAI46_00430 at 97.994 kb on - strand, within IAI46_00430 at 97.994 kb on - strand, within IAI46_00430 at 97.995 kb on + strand, within IAI46_00430 at 97.995 kb on + strand, within IAI46_00430 at 97.996 kb on - strand, within IAI46_00430 at 97.996 kb on - strand, within IAI46_00430 at 98.005 kb on + strand, within IAI46_00430 at 98.017 kb on + strand, within IAI46_00430 at 98.017 kb on + strand, within IAI46_00430 at 98.017 kb on + strand, within IAI46_00430 at 98.018 kb on - strand, within IAI46_00430 at 98.151 kb on + strand, within IAI46_00430 at 98.151 kb on + strand, within IAI46_00430 at 98.151 kb on + strand, within IAI46_00430 at 98.151 kb on + strand, within IAI46_00430 at 98.152 kb on - strand, within IAI46_00430 at 98.152 kb on - strand, within IAI46_00430 at 98.165 kb on - strand, within IAI46_00430 at 98.165 kb on - strand, within IAI46_00430 at 98.165 kb on - strand, within IAI46_00430 at 98.171 kb on - strand, within IAI46_00430 at 98.171 kb on - strand, within IAI46_00430 at 98.194 kb on + strand, within IAI46_00430 at 98.194 kb on + strand, within IAI46_00430 at 98.195 kb on - strand, within IAI46_00430 at 98.217 kb on + strand, within IAI46_00430 at 98.218 kb on - strand, within IAI46_00430 at 98.242 kb on - strand, within IAI46_00430 at 98.242 kb on - strand, within IAI46_00430 at 98.281 kb on + strand, within IAI46_00430 at 98.281 kb on + strand, within IAI46_00430 at 98.281 kb on + strand, within IAI46_00430 at 98.282 kb on - strand, within IAI46_00430 at 98.282 kb on - strand, within IAI46_00430 at 98.282 kb on - strand, within IAI46_00430 at 98.284 kb on - strand, within IAI46_00430 at 98.296 kb on - strand, within IAI46_00430 at 98.344 kb on + strand, within IAI46_00430 at 98.395 kb on - strand, within IAI46_00430 at 98.444 kb on + strand, within IAI46_00430 at 98.444 kb on + strand, within IAI46_00430 at 98.523 kb on + strand at 98.524 kb on - strand at 98.524 kb on - strand at 98.524 kb on - strand at 98.540 kb on + strand at 98.540 kb on + strand at 98.541 kb on - strand at 98.541 kb on - strand at 98.575 kb on + strand at 98.622 kb on + strand at 98.623 kb on - strand at 98.623 kb on - strand at 98.623 kb on - strand at 98.654 kb on + strand at 98.654 kb on + strand at 98.654 kb on + strand at 98.655 kb on - strand at 98.655 kb on - strand at 98.655 kb on - strand at 98.655 kb on - strand at 98.655 kb on - strand at 98.655 kb on - strand at 98.656 kb on + strand at 98.657 kb on - strand at 98.668 kb on + strand at 98.699 kb on + strand at 98.702 kb on + strand at 98.702 kb on + strand at 98.716 kb on + strand at 98.717 kb on - strand at 98.717 kb on - strand at 98.717 kb on - strand at 98.719 kb on + strand at 98.740 kb on + strand at 98.740 kb on + strand at 98.740 kb on + strand at 98.742 kb on + strand at 98.742 kb on + strand at 98.742 kb on + strand at 98.742 kb on + strand at 98.742 kb on + strand at 98.742 kb on + strand at 98.743 kb on - strand at 98.743 kb on - strand at 98.743 kb on - strand at 98.743 kb on - strand at 98.743 kb on - strand at 98.744 kb on + strand at 98.745 kb on - strand at 98.745 kb on - strand at 98.745 kb on - strand at 98.783 kb on - strand at 98.783 kb on - strand at 98.783 kb on - strand at 98.872 kb on - strand at 98.872 kb on - strand at 98.876 kb on + strand at 98.876 kb on + strand at 98.876 kb on + strand at 98.887 kb on + strand at 98.930 kb on - strand at 98.934 kb on + strand at 98.934 kb on + strand at 98.934 kb on + strand at 98.934 kb on + strand at 98.935 kb on - strand at 98.935 kb on - strand at 98.935 kb on - strand at 98.935 kb on - strand at 98.935 kb on - strand at 98.961 kb on + strand at 98.979 kb on + strand at 98.979 kb on + strand at 98.979 kb on + strand at 98.979 kb on + strand at 98.979 kb on + strand at 98.979 kb on + strand at 98.980 kb on - strand at 98.980 kb on - strand at 98.980 kb on - strand at 98.981 kb on + strand at 98.982 kb on - strand at 98.986 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.988 kb on + strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 98.989 kb on - strand at 99.044 kb on + strand at 99.188 kb on + strand, within IAI46_00435 at 99.188 kb on + strand, within IAI46_00435 at 99.243 kb on - strand, within IAI46_00435 at 99.469 kb on + strand, within IAI46_00435 at 99.470 kb on - strand, within IAI46_00435 at 99.572 kb on + strand at 99.573 kb on - strand at 99.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stress control, anaerobic remove 96,103 + IAI46_00420 0.88 -0.0 96,104 - IAI46_00420 0.88 +0.8 96,107 - IAI46_00420 0.89 +0.1 96,144 + +0.1 96,144 + +1.5 96,145 - +1.0 96,195 + +0.2 96,195 + -0.3 96,195 + +0.6 96,282 + -0.4 96,314 + +0.5 96,315 - +0.6 96,456 - IAI46_00425 0.33 -0.0 96,691 - IAI46_00425 0.88 +0.0 96,691 - IAI46_00425 0.88 +1.7 96,713 + +0.2 96,713 + -1.4 96,714 - -0.2 96,714 - -0.1 96,714 - -0.4 96,714 - -0.0 96,721 + -0.5 96,721 + -0.2 96,734 + +0.1 96,734 + +0.1 96,735 - -0.4 96,735 - -0.7 96,735 - -0.5 96,775 + +0.1 96,775 + +2.3 96,775 + -0.4 96,775 + +0.2 96,776 - +0.0 96,776 - +0.4 96,776 - +1.4 96,776 - +0.2 96,778 + +0.4 96,778 + +0.3 96,779 - +0.1 96,779 - +0.8 96,779 - +0.2 96,809 + +0.5 96,809 + +0.1 96,810 - +0.8 96,810 - -0.3 96,862 + -1.4 96,862 + -0.6 96,863 - +1.2 96,865 + +0.4 96,866 - -0.1 96,883 + +0.1 96,883 + +0.1 96,884 - +0.4 96,961 + -0.4 96,962 - +0.9 96,962 - +0.5 96,975 + -0.5 96,976 - -0.1 96,998 + -0.6 96,999 - -0.1 97,004 + -0.2 97,019 - +0.4 97,052 - +0.9 97,052 - -0.1 97,092 + -0.1 97,092 + -0.4 97,093 - +0.7 97,093 - -0.6 97,137 + IAI46_00430 0.10 -0.1 97,138 - IAI46_00430 0.10 +1.1 97,184 - IAI46_00430 0.13 +0.8 97,188 + IAI46_00430 0.13 +0.6 97,202 + IAI46_00430 0.14 +0.1 97,203 - IAI46_00430 0.14 -0.1 97,203 - IAI46_00430 0.14 +0.4 97,203 - IAI46_00430 0.14 -0.4 97,231 + IAI46_00430 0.16 +1.0 97,232 - IAI46_00430 0.16 +0.0 97,232 - IAI46_00430 0.16 +1.4 97,234 + IAI46_00430 0.16 -0.6 97,234 + IAI46_00430 0.16 -3.1 97,235 - IAI46_00430 0.16 -0.6 97,235 - IAI46_00430 0.16 +0.3 97,235 - IAI46_00430 0.16 +0.8 97,235 - IAI46_00430 0.16 +1.2 97,334 + IAI46_00430 0.22 -2.2 97,335 - IAI46_00430 0.22 -0.5 97,335 - IAI46_00430 0.22 +0.8 97,335 - IAI46_00430 0.22 +0.4 97,335 - IAI46_00430 0.22 -0.4 97,491 + IAI46_00430 0.31 +0.5 97,491 + IAI46_00430 0.31 +2.0 97,491 + IAI46_00430 0.31 -0.2 97,491 + IAI46_00430 0.31 -0.1 97,492 - IAI46_00430 0.31 -0.5 97,492 - IAI46_00430 0.31 +0.1 97,549 + IAI46_00430 0.35 +0.2 97,549 + IAI46_00430 0.35 +0.3 97,549 + IAI46_00430 0.35 +0.4 97,550 - IAI46_00430 0.35 -0.0 97,550 - IAI46_00430 0.35 +0.8 97,560 - IAI46_00430 0.35 +0.3 97,560 - IAI46_00430 0.35 +0.4 97,573 + IAI46_00430 0.36 +0.2 97,573 + IAI46_00430 0.36 -0.8 97,616 - IAI46_00430 0.38 +0.8 97,616 - IAI46_00430 0.38 -0.4 97,674 + IAI46_00430 0.42 -0.3 97,674 + IAI46_00430 0.42 +0.7 97,674 + IAI46_00430 0.42 -0.2 97,675 - IAI46_00430 0.42 +0.2 97,675 - IAI46_00430 0.42 +0.6 97,675 - IAI46_00430 0.42 -0.0 97,678 + IAI46_00430 0.42 -0.3 97,678 + IAI46_00430 0.42 -0.5 97,678 + IAI46_00430 0.42 -0.7 97,678 + IAI46_00430 0.42 -1.5 97,678 + IAI46_00430 0.42 -0.0 97,678 + IAI46_00430 0.42 -0.1 97,679 - IAI46_00430 0.42 +0.1 97,708 + IAI46_00430 0.44 -0.2 97,708 + IAI46_00430 0.44 -0.2 97,708 + IAI46_00430 0.44 -0.3 97,708 + IAI46_00430 0.44 -0.1 97,708 + IAI46_00430 0.44 +0.7 97,708 + IAI46_00430 0.44 -0.7 97,709 - IAI46_00430 0.44 +0.1 97,709 - IAI46_00430 0.44 -0.2 97,709 - IAI46_00430 0.44 +0.2 97,719 + IAI46_00430 0.45 +0.4 97,719 + IAI46_00430 0.45 +0.8 97,719 + IAI46_00430 0.45 +0.7 97,720 - IAI46_00430 0.45 -0.0 97,722 + IAI46_00430 0.45 -0.6 97,884 + IAI46_00430 0.54 +0.9 97,884 + IAI46_00430 0.54 +0.6 97,885 - IAI46_00430 0.54 -0.6 97,905 + IAI46_00430 0.56 -0.4 97,905 + IAI46_00430 0.56 -0.4 97,906 - IAI46_00430 0.56 -0.1 97,906 - IAI46_00430 0.56 +0.2 97,906 - IAI46_00430 0.56 -0.2 97,906 - IAI46_00430 0.56 +0.9 97,906 - IAI46_00430 0.56 -0.4 97,993 + IAI46_00430 0.61 -0.3 97,993 + IAI46_00430 0.61 +0.4 97,993 + IAI46_00430 0.61 -0.3 97,994 - IAI46_00430 0.61 +1.2 97,994 - IAI46_00430 0.61 -1.2 97,994 - IAI46_00430 0.61 +1.3 97,995 + IAI46_00430 0.61 +0.6 97,995 + IAI46_00430 0.61 +0.2 97,996 - IAI46_00430 0.61 +0.3 97,996 - IAI46_00430 0.61 +0.5 98,005 + IAI46_00430 0.61 -0.2 98,017 + IAI46_00430 0.62 -0.3 98,017 + IAI46_00430 0.62 +0.8 98,017 + IAI46_00430 0.62 +0.2 98,018 - IAI46_00430 0.62 -0.6 98,151 + IAI46_00430 0.70 -0.4 98,151 + IAI46_00430 0.70 -0.2 98,151 + IAI46_00430 0.70 -0.0 98,151 + IAI46_00430 0.70 +0.8 98,152 - IAI46_00430 0.70 -0.2 98,152 - IAI46_00430 0.70 +0.9 98,165 - IAI46_00430 0.71 -1.8 98,165 - IAI46_00430 0.71 +0.1 98,165 - IAI46_00430 0.71 +1.2 98,171 - IAI46_00430 0.71 +0.3 98,171 - IAI46_00430 0.71 +0.1 98,194 + IAI46_00430 0.73 +0.4 98,194 + IAI46_00430 0.73 +0.1 98,195 - IAI46_00430 0.73 +0.1 98,217 + IAI46_00430 0.74 +0.2 98,218 - IAI46_00430 0.74 -0.2 98,242 - IAI46_00430 0.75 +0.2 98,242 - IAI46_00430 0.75 +0.9 98,281 + IAI46_00430 0.78 -1.0 98,281 + IAI46_00430 0.78 -0.1 98,281 + IAI46_00430 0.78 +0.3 98,282 - IAI46_00430 0.78 -1.8 98,282 - IAI46_00430 0.78 +0.1 98,282 - IAI46_00430 0.78 -0.4 98,284 - IAI46_00430 0.78 -0.5 98,296 - IAI46_00430 0.79 -1.1 98,344 + IAI46_00430 0.81 -1.1 98,395 - IAI46_00430 0.84 +0.8 98,444 + IAI46_00430 0.87 +0.4 98,444 + IAI46_00430 0.87 -0.2 98,523 + -0.7 98,524 - +0.4 98,524 - +0.2 98,524 - +0.1 98,540 + -0.5 98,540 + -0.5 98,541 - +1.0 98,541 - +0.2 98,575 + +0.3 98,622 + +1.1 98,623 - -0.2 98,623 - -0.7 98,623 - -0.6 98,654 + +0.5 98,654 + +0.2 98,654 + +0.2 98,655 - -0.3 98,655 - +0.8 98,655 - -0.0 98,655 - +1.4 98,655 - -0.4 98,655 - -0.5 98,656 + -0.2 98,657 - +0.0 98,668 + -0.2 98,699 + -0.0 98,702 + -0.5 98,702 + -0.1 98,716 + -0.4 98,717 - +0.2 98,717 - -0.2 98,717 - +0.4 98,719 + +1.0 98,740 + -0.2 98,740 + +0.2 98,740 + +0.5 98,742 + -0.8 98,742 + +0.6 98,742 + +0.3 98,742 + +0.4 98,742 + +0.1 98,742 + -0.2 98,743 - -1.2 98,743 - +0.4 98,743 - +0.9 98,743 - +0.3 98,743 - +0.4 98,744 + +0.1 98,745 - -0.4 98,745 - +0.0 98,745 - -0.4 98,783 - +0.4 98,783 - -0.0 98,783 - -0.4 98,872 - +0.3 98,872 - -0.4 98,876 + +0.2 98,876 + +0.4 98,876 + -0.6 98,887 + -0.0 98,930 - +0.1 98,934 + +0.9 98,934 + -0.2 98,934 + -1.1 98,934 + -0.0 98,935 - +0.4 98,935 - +1.0 98,935 - +0.1 98,935 - +0.3 98,935 - +0.3 98,961 + -0.2 98,979 + +0.4 98,979 + -0.2 98,979 + -0.6 98,979 + +0.5 98,979 + -0.2 98,979 + -0.1 98,980 - -0.5 98,980 - -0.0 98,980 - -1.1 98,981 + +0.3 98,982 - +0.0 98,986 + -0.8 98,988 + +0.7 98,988 + -1.0 98,988 + +0.2 98,988 + -1.0 98,988 + +0.0 98,988 + +0.8 98,988 + -0.1 98,988 + -0.7 98,988 + +0.7 98,988 + +0.6 98,989 - -0.0 98,989 - +0.1 98,989 - -1.0 98,989 - -0.4 98,989 - -1.4 98,989 - +0.4 98,989 - -0.2 98,989 - +0.0 98,989 - -0.6 99,044 + +0.5 99,188 + IAI46_00435 0.28 +0.1 99,188 + IAI46_00435 0.28 +0.2 99,243 - IAI46_00435 0.37 +0.6 99,469 + IAI46_00435 0.75 -1.2 99,470 - IAI46_00435 0.75 -0.7 99,572 + -0.4 99,573 - -1.0 99,654 - +1.1
Or see this region's nucleotide sequence