Strain Fitness in Serratia liquefaciens MT49 around IAI46_00230

Experiment: No stress control, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00225 and IAI46_00230 are separated by 228 nucleotidesIAI46_00230 and IAI46_00235 are separated by 33 nucleotidesIAI46_00235 and IAI46_00240 are separated by 66 nucleotides IAI46_00225: IAI46_00225 - formate dehydrogenase accessory protein FdhE, at 51,695 to 52,624 _00225 IAI46_00230: IAI46_00230 - DcrB-related protein, at 52,853 to 53,500 _00230 IAI46_00235: IAI46_00235 - glutathione S-transferase, at 53,534 to 54,139 _00235 IAI46_00240: IAI46_00240 - L-seryl-tRNA(Sec) selenium transferase, at 54,206 to 55,597 _00240 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.857 kb on + strand, within IAI46_00225at 51.858 kb on - strand, within IAI46_00225at 51.932 kb on - strand, within IAI46_00225at 51.932 kb on - strand, within IAI46_00225at 52.199 kb on + strand, within IAI46_00225at 52.199 kb on + strand, within IAI46_00225at 52.200 kb on - strand, within IAI46_00225at 52.247 kb on + strand, within IAI46_00225at 52.310 kb on - strand, within IAI46_00225at 52.335 kb on - strand, within IAI46_00225at 52.388 kb on - strand, within IAI46_00225at 52.388 kb on - strand, within IAI46_00225at 52.388 kb on - strand, within IAI46_00225at 52.388 kb on - strand, within IAI46_00225at 52.388 kb on - strand, within IAI46_00225at 52.418 kb on + strand, within IAI46_00225at 52.419 kb on - strand, within IAI46_00225at 52.481 kb on + strand, within IAI46_00225at 52.481 kb on + strand, within IAI46_00225at 52.481 kb on + strand, within IAI46_00225at 52.482 kb on - strand, within IAI46_00225at 52.651 kb on + strandat 52.652 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.691 kb on - strandat 52.691 kb on - strandat 52.747 kb on + strandat 52.748 kb on - strandat 52.755 kb on + strandat 52.755 kb on + strandat 52.760 kb on - strandat 52.760 kb on - strandat 52.807 kb on + strandat 52.807 kb on + strandat 52.808 kb on - strandat 52.808 kb on - strandat 52.808 kb on - strandat 52.808 kb on - strandat 52.813 kb on + strandat 52.930 kb on + strand, within IAI46_00230at 53.221 kb on + strand, within IAI46_00230at 53.222 kb on - strand, within IAI46_00230at 53.273 kb on + strand, within IAI46_00230at 53.281 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.377 kb on + strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.498 kb on + strandat 53.498 kb on + strandat 53.542 kb on + strandat 53.543 kb on - strandat 53.543 kb on - strandat 53.553 kb on - strandat 53.714 kb on + strand, within IAI46_00235at 53.714 kb on + strand, within IAI46_00235at 53.739 kb on - strand, within IAI46_00235at 53.803 kb on - strand, within IAI46_00235at 54.026 kb on + strand, within IAI46_00235at 54.168 kb on + strandat 54.169 kb on - strandat 54.187 kb on - strandat 54.187 kb on - strandat 54.187 kb on - strandat 54.230 kb on + strandat 54.241 kb on - strandat 54.321 kb on + strandat 54.321 kb on + strandat 54.322 kb on - strandat 54.322 kb on - strandat 54.358 kb on + strand, within IAI46_00240at 54.359 kb on - strand, within IAI46_00240at 54.359 kb on - strand, within IAI46_00240

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, anaerobic
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51,857 + IAI46_00225 0.17 +0.2
51,858 - IAI46_00225 0.18 +0.3
51,932 - IAI46_00225 0.25 -0.8
51,932 - IAI46_00225 0.25 -0.1
52,199 + IAI46_00225 0.54 -0.9
52,199 + IAI46_00225 0.54 +0.7
52,200 - IAI46_00225 0.54 +0.9
52,247 + IAI46_00225 0.59 -0.5
52,310 - IAI46_00225 0.66 -0.5
52,335 - IAI46_00225 0.69 -1.3
52,388 - IAI46_00225 0.75 -0.3
52,388 - IAI46_00225 0.75 +2.7
52,388 - IAI46_00225 0.75 -0.4
52,388 - IAI46_00225 0.75 -0.1
52,388 - IAI46_00225 0.75 -1.2
52,418 + IAI46_00225 0.78 -1.1
52,419 - IAI46_00225 0.78 -0.4
52,481 + IAI46_00225 0.85 +0.3
52,481 + IAI46_00225 0.85 +0.4
52,481 + IAI46_00225 0.85 -2.0
52,482 - IAI46_00225 0.85 -0.2
52,651 + +0.6
52,652 - +0.0
52,682 - +0.3
52,682 - +0.8
52,682 - +0.1
52,682 - -0.3
52,682 - -0.2
52,691 - +0.1
52,691 - +0.3
52,747 + +0.3
52,748 - -0.4
52,755 + -0.2
52,755 + -0.2
52,760 - -0.5
52,760 - -0.2
52,807 + +0.0
52,807 + +0.4
52,808 - +0.1
52,808 - +0.8
52,808 - -0.0
52,808 - -0.2
52,813 + -0.4
52,930 + IAI46_00230 0.12 -0.1
53,221 + IAI46_00230 0.57 +0.3
53,222 - IAI46_00230 0.57 -0.4
53,273 + IAI46_00230 0.65 -1.0
53,281 + IAI46_00230 0.66 -0.2
53,370 + IAI46_00230 0.80 -0.5
53,370 + IAI46_00230 0.80 -0.8
53,370 + IAI46_00230 0.80 -0.5
53,371 - IAI46_00230 0.80 +0.7
53,371 - IAI46_00230 0.80 +0.6
53,371 - IAI46_00230 0.80 -0.6
53,371 - IAI46_00230 0.80 +0.3
53,371 - IAI46_00230 0.80 -0.0
53,371 - IAI46_00230 0.80 +0.1
53,377 + IAI46_00230 0.81 +0.2
53,378 - IAI46_00230 0.81 +0.2
53,378 - IAI46_00230 0.81 -0.2
53,378 - IAI46_00230 0.81 -0.2
53,378 - IAI46_00230 0.81 -0.4
53,378 - IAI46_00230 0.81 -0.1
53,378 - IAI46_00230 0.81 -1.5
53,498 + +0.5
53,498 + -0.1
53,542 + -0.2
53,543 - -0.1
53,543 - +0.0
53,553 - -0.7
53,714 + IAI46_00235 0.30 +0.4
53,714 + IAI46_00235 0.30 -0.0
53,739 - IAI46_00235 0.34 +0.6
53,803 - IAI46_00235 0.44 +0.9
54,026 + IAI46_00235 0.81 -0.0
54,168 + -0.3
54,169 - -0.3
54,187 - +0.3
54,187 - +0.1
54,187 - -0.1
54,230 + -0.3
54,241 - -0.1
54,321 + +0.4
54,321 + -0.3
54,322 - +0.2
54,322 - +0.4
54,358 + IAI46_00240 0.11 -0.2
54,359 - IAI46_00240 0.11 -0.1
54,359 - IAI46_00240 0.11 -1.3

Or see this region's nucleotide sequence