Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0767

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0766 and Echvi_0767 are separated by 390 nucleotidesEchvi_0767 and Echvi_0768 are separated by 23 nucleotides Echvi_0766: Echvi_0766 - hypothetical protein, at 859,520 to 860,314 _0766 Echvi_0767: Echvi_0767 - hypothetical protein, at 860,705 to 860,959 _0767 Echvi_0768: Echvi_0768 - carbamoyl-phosphate synthase, large subunit, at 860,983 to 863,802 _0768 Position (kb) 860 861Strain fitness (log2 ratio) -2 -1 0 1at 859.705 kb on + strand, within Echvi_0766at 859.908 kb on - strand, within Echvi_0766at 859.908 kb on - strand, within Echvi_0766at 859.909 kb on + strand, within Echvi_0766at 859.909 kb on + strand, within Echvi_0766at 859.910 kb on - strand, within Echvi_0766at 859.910 kb on - strand, within Echvi_0766at 859.932 kb on + strand, within Echvi_0766at 859.932 kb on + strand, within Echvi_0766at 859.932 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.934 kb on + strand, within Echvi_0766at 859.935 kb on - strand, within Echvi_0766at 859.941 kb on + strand, within Echvi_0766at 859.942 kb on - strand, within Echvi_0766at 859.956 kb on - strand, within Echvi_0766at 859.969 kb on + strand, within Echvi_0766at 860.207 kb on - strand, within Echvi_0766at 860.210 kb on + strand, within Echvi_0766at 860.211 kb on - strand, within Echvi_0766at 860.247 kb on + strandat 860.258 kb on - strandat 860.343 kb on + strandat 860.344 kb on - strandat 860.348 kb on + strandat 860.349 kb on - strandat 860.410 kb on - strandat 860.412 kb on + strandat 860.413 kb on - strandat 860.413 kb on - strandat 860.421 kb on - strandat 860.426 kb on + strandat 860.437 kb on + strandat 860.437 kb on + strandat 860.437 kb on + strandat 860.476 kb on - strandat 860.476 kb on - strandat 860.476 kb on - strandat 860.559 kb on + strandat 860.634 kb on + strandat 860.701 kb on + strandat 860.702 kb on - strandat 860.707 kb on - strandat 860.707 kb on - strandat 860.733 kb on + strand, within Echvi_0767at 860.733 kb on + strand, within Echvi_0767at 860.733 kb on + strand, within Echvi_0767at 860.733 kb on + strand, within Echvi_0767at 860.734 kb on - strand, within Echvi_0767at 860.734 kb on - strand, within Echvi_0767at 860.755 kb on + strand, within Echvi_0767at 860.755 kb on + strand, within Echvi_0767at 860.756 kb on - strand, within Echvi_0767at 860.756 kb on - strand, within Echvi_0767at 860.773 kb on - strand, within Echvi_0767at 860.787 kb on + strand, within Echvi_0767at 860.798 kb on + strand, within Echvi_0767at 860.798 kb on + strand, within Echvi_0767at 860.799 kb on - strand, within Echvi_0767at 860.799 kb on - strand, within Echvi_0767at 860.884 kb on + strand, within Echvi_0767at 860.991 kb on + strandat 860.997 kb on - strandat 861.029 kb on + strandat 861.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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859,705 + Echvi_0766 0.23 -0.2
859,908 - Echvi_0766 0.49 +0.3
859,908 - Echvi_0766 0.49 +1.0
859,909 + Echvi_0766 0.49 +0.4
859,909 + Echvi_0766 0.49 -0.6
859,910 - Echvi_0766 0.49 -1.2
859,910 - Echvi_0766 0.49 -0.1
859,932 + Echvi_0766 0.52 +1.0
859,932 + Echvi_0766 0.52 -0.9
859,932 + Echvi_0766 0.52 +0.4
859,934 + Echvi_0766 0.52 -2.2
859,934 + Echvi_0766 0.52 +0.4
859,934 + Echvi_0766 0.52 -0.7
859,934 + Echvi_0766 0.52 +0.3
859,934 + Echvi_0766 0.52 -0.8
859,935 - Echvi_0766 0.52 -0.3
859,941 + Echvi_0766 0.53 +0.1
859,942 - Echvi_0766 0.53 +0.2
859,956 - Echvi_0766 0.55 -0.8
859,969 + Echvi_0766 0.56 +0.5
860,207 - Echvi_0766 0.86 +0.8
860,210 + Echvi_0766 0.87 -0.6
860,211 - Echvi_0766 0.87 -1.9
860,247 + +0.4
860,258 - +1.2
860,343 + -0.7
860,344 - +0.7
860,348 + -0.2
860,349 - +0.5
860,410 - -0.3
860,412 + +0.8
860,413 - -1.1
860,413 - -0.1
860,421 - +0.3
860,426 + +0.3
860,437 + -0.1
860,437 + +0.8
860,437 + -2.1
860,476 - +1.4
860,476 - -1.1
860,476 - -0.6
860,559 + -0.1
860,634 + -1.1
860,701 + -0.4
860,702 - +0.1
860,707 - -0.8
860,707 - +0.3
860,733 + Echvi_0767 0.11 +0.7
860,733 + Echvi_0767 0.11 -2.3
860,733 + Echvi_0767 0.11 -0.1
860,733 + Echvi_0767 0.11 -0.8
860,734 - Echvi_0767 0.11 -2.2
860,734 - Echvi_0767 0.11 +0.8
860,755 + Echvi_0767 0.20 -0.8
860,755 + Echvi_0767 0.20 -0.8
860,756 - Echvi_0767 0.20 -1.5
860,756 - Echvi_0767 0.20 -0.2
860,773 - Echvi_0767 0.27 -1.2
860,787 + Echvi_0767 0.32 -0.3
860,798 + Echvi_0767 0.36 -0.1
860,798 + Echvi_0767 0.36 -0.9
860,799 - Echvi_0767 0.37 -0.2
860,799 - Echvi_0767 0.37 +0.4
860,884 + Echvi_0767 0.70 -1.2
860,991 + -0.7
860,997 - +0.9
861,029 + -0.0
861,030 - -0.2

Or see this region's nucleotide sequence