Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0136

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0135 and Echvi_0136 are separated by 6 nucleotidesEchvi_0136 and Echvi_0137 are separated by 254 nucleotides Echvi_0134: Echvi_0134 - hypothetical protein, at 133,769 to 134,284 _0134 Echvi_0135: Echvi_0135 - Uncharacterized protein conserved in bacteria, at 134,256 to 135,263 _0135 Echvi_0136: Echvi_0136 - Membrane-bound serine protease (ClpP class), at 135,270 to 135,728 _0136 Echvi_0137: Echvi_0137 - prolyl-tRNA synthetase, family I, at 135,983 to 137,464 _0137 Position (kb) 135 136Strain fitness (log2 ratio) -1 0 1 2at 134.279 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.279 kb on + strandat 134.280 kb on - strandat 134.280 kb on - strandat 134.356 kb on + strandat 134.359 kb on + strand, within Echvi_0135at 134.434 kb on - strand, within Echvi_0135at 134.514 kb on - strand, within Echvi_0135at 134.528 kb on + strand, within Echvi_0135at 134.556 kb on + strand, within Echvi_0135at 134.635 kb on - strand, within Echvi_0135at 134.635 kb on - strand, within Echvi_0135at 134.690 kb on + strand, within Echvi_0135at 134.859 kb on - strand, within Echvi_0135at 134.883 kb on + strand, within Echvi_0135at 134.883 kb on + strand, within Echvi_0135at 134.884 kb on - strand, within Echvi_0135at 134.951 kb on + strand, within Echvi_0135at 134.997 kb on + strand, within Echvi_0135at 135.087 kb on - strand, within Echvi_0135at 135.239 kb on + strandat 135.255 kb on + strandat 135.256 kb on - strandat 135.264 kb on - strandat 135.264 kb on - strandat 135.264 kb on - strandat 135.267 kb on - strandat 135.267 kb on - strandat 135.267 kb on - strandat 135.269 kb on - strandat 135.271 kb on + strandat 135.271 kb on + strandat 135.271 kb on + strandat 135.272 kb on - strandat 135.276 kb on - strandat 135.287 kb on + strandat 135.287 kb on + strandat 135.297 kb on + strandat 135.454 kb on + strand, within Echvi_0136at 135.454 kb on + strand, within Echvi_0136at 135.455 kb on - strand, within Echvi_0136at 135.464 kb on + strand, within Echvi_0136at 135.465 kb on - strand, within Echvi_0136at 135.498 kb on + strand, within Echvi_0136at 135.531 kb on + strand, within Echvi_0136at 135.531 kb on + strand, within Echvi_0136at 135.531 kb on + strand, within Echvi_0136at 135.532 kb on - strand, within Echvi_0136at 135.533 kb on + strand, within Echvi_0136at 135.541 kb on - strand, within Echvi_0136at 135.703 kb on - strandat 135.762 kb on - strandat 135.793 kb on + strandat 135.886 kb on + strandat 135.911 kb on + strandat 135.911 kb on + strandat 135.911 kb on + strandat 135.912 kb on - strandat 135.933 kb on - strandat 135.975 kb on + strandat 135.976 kb on - strandat 135.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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134,279 + -0.6
134,279 + -0.6
134,279 + -0.7
134,279 + -0.1
134,279 + +0.3
134,280 - -1.0
134,280 - -0.7
134,356 + -0.3
134,359 + Echvi_0135 0.10 +1.7
134,434 - Echvi_0135 0.18 +0.1
134,514 - Echvi_0135 0.26 -0.4
134,528 + Echvi_0135 0.27 +1.1
134,556 + Echvi_0135 0.30 +0.4
134,635 - Echvi_0135 0.38 -0.9
134,635 - Echvi_0135 0.38 -0.1
134,690 + Echvi_0135 0.43 +0.4
134,859 - Echvi_0135 0.60 -0.2
134,883 + Echvi_0135 0.62 -0.7
134,883 + Echvi_0135 0.62 +0.3
134,884 - Echvi_0135 0.62 +0.2
134,951 + Echvi_0135 0.69 -0.5
134,997 + Echvi_0135 0.74 +0.8
135,087 - Echvi_0135 0.82 -0.1
135,239 + +0.2
135,255 + +1.4
135,256 - +0.0
135,264 - +0.8
135,264 - -0.1
135,264 - +0.4
135,267 - -0.3
135,267 - +0.0
135,267 - +0.6
135,269 - +0.1
135,271 + -0.5
135,271 + -1.1
135,271 + +0.4
135,272 - +0.3
135,276 - +0.1
135,287 + +1.0
135,287 + -1.7
135,297 + +0.9
135,454 + Echvi_0136 0.40 -0.8
135,454 + Echvi_0136 0.40 +2.7
135,455 - Echvi_0136 0.40 +1.6
135,464 + Echvi_0136 0.42 -0.0
135,465 - Echvi_0136 0.42 -0.4
135,498 + Echvi_0136 0.50 +0.8
135,531 + Echvi_0136 0.57 +0.5
135,531 + Echvi_0136 0.57 +1.4
135,531 + Echvi_0136 0.57 -0.0
135,532 - Echvi_0136 0.57 -0.7
135,533 + Echvi_0136 0.57 +1.1
135,541 - Echvi_0136 0.59 +0.1
135,703 - -1.4
135,762 - +0.4
135,793 + -0.5
135,886 + +1.1
135,911 + +0.2
135,911 + +1.6
135,911 + -1.4
135,912 - +0.2
135,933 - -0.2
135,975 + +2.0
135,976 - +0.4
135,976 - +2.3

Or see this region's nucleotide sequence