Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03910

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03652 and CCNA_03653 are separated by 123 nucleotidesCCNA_03653 and CCNA_03910 are separated by 212 nucleotidesCCNA_03910 and CCNA_03655 are separated by 85 nucleotides CCNA_03652: CCNA_03652 - ATP-dependent nuclease subunit A, at 3,811,849 to 3,815,310 _03652 CCNA_03653: CCNA_03653 - thioredoxin, at 3,815,434 to 3,815,766 _03653 CCNA_03910: CCNA_03910 - hypothetical protein, at 3,815,979 to 3,816,086 _03910 CCNA_03655: CCNA_03655 - folylpolyglutamate synthase/dihydrofolate synthase, at 3,816,172 to 3,817,485 _03655 Position (kb) 3815 3816 3817Strain fitness (log2 ratio) -2 -1 0 1 2at 3814.991 kb on - strandat 3814.996 kb on - strandat 3815.011 kb on + strandat 3815.027 kb on + strandat 3815.032 kb on + strandat 3815.052 kb on - strandat 3815.181 kb on + strandat 3815.196 kb on - strandat 3815.249 kb on + strandat 3815.257 kb on - strandat 3815.257 kb on - strandat 3815.257 kb on - strandat 3815.305 kb on + strandat 3815.312 kb on - strandat 3815.313 kb on - strandat 3815.336 kb on + strandat 3815.344 kb on - strandat 3815.363 kb on - strandat 3815.422 kb on - strandat 3815.819 kb on - strandat 3815.868 kb on - strandat 3815.873 kb on - strandat 3815.923 kb on + strandat 3815.923 kb on + strandat 3815.924 kb on - strandat 3815.931 kb on - strandat 3815.936 kb on - strandat 3815.975 kb on + strandat 3816.069 kb on + strand, within CCNA_03910at 3816.070 kb on + strand, within CCNA_03910at 3816.076 kb on + strandat 3816.084 kb on - strandat 3816.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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3,814,991 - +0.0
3,814,996 - -2.0
3,815,011 + -0.6
3,815,027 + +0.5
3,815,032 + +0.4
3,815,052 - -1.4
3,815,181 + -0.6
3,815,196 - -1.1
3,815,249 + +1.0
3,815,257 - -1.8
3,815,257 - -1.6
3,815,257 - -1.0
3,815,305 + -0.5
3,815,312 - -0.4
3,815,313 - -0.1
3,815,336 + -0.2
3,815,344 - -0.3
3,815,363 - -1.2
3,815,422 - +0.0
3,815,819 - +0.5
3,815,868 - +2.3
3,815,873 - +0.6
3,815,923 + +0.3
3,815,923 + +0.1
3,815,924 - +0.3
3,815,931 - +0.2
3,815,936 - +0.3
3,815,975 + -0.0
3,816,069 + CCNA_03910 0.83 -0.9
3,816,070 + CCNA_03910 0.84 -1.7
3,816,076 + -0.3
3,816,084 - +0.8
3,816,100 - +0.3

Or see this region's nucleotide sequence