Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03753

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03752 and CCNA_03753 overlap by 4 nucleotidesCCNA_03753 and CCNA_03754 overlap by 20 nucleotidesCCNA_03754 and CCNA_03755 are separated by 119 nucleotides CCNA_03752: CCNA_03752 - UTP-glucose-1-phosphate uridylyltransferase, at 3,921,686 to 3,922,582 _03752 CCNA_03753: CCNA_03753 - iron-sulfur cluster-binding protein, at 3,922,579 to 3,923,709 _03753 CCNA_03754: CCNA_03754 - FtsZ-binding protein FzlA, at 3,923,690 to 3,924,376 _03754 CCNA_03755: CCNA_03755 - bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase, at 3,924,496 to 3,925,947 _03755 Position (kb) 3922 3923 3924Strain fitness (log2 ratio) -2 -1 0 1at 3921.582 kb on - strandat 3921.584 kb on + strandat 3921.592 kb on - strandat 3921.614 kb on + strandat 3921.614 kb on + strandat 3921.615 kb on + strandat 3921.615 kb on + strandat 3921.647 kb on - strandat 3921.650 kb on + strandat 3921.685 kb on - strandat 3922.558 kb on + strandat 3922.576 kb on + strandat 3922.577 kb on + strandat 3922.577 kb on + strandat 3922.585 kb on - strandat 3922.585 kb on - strandat 3922.621 kb on + strandat 3922.629 kb on - strandat 3922.669 kb on - strandat 3922.671 kb on - strandat 3922.723 kb on + strand, within CCNA_03753at 3922.723 kb on + strand, within CCNA_03753at 3922.837 kb on + strand, within CCNA_03753at 3922.845 kb on - strand, within CCNA_03753at 3922.845 kb on - strand, within CCNA_03753at 3922.878 kb on - strand, within CCNA_03753at 3922.938 kb on + strand, within CCNA_03753at 3922.958 kb on + strand, within CCNA_03753at 3922.999 kb on + strand, within CCNA_03753at 3923.126 kb on - strand, within CCNA_03753at 3923.145 kb on + strand, within CCNA_03753at 3923.145 kb on + strand, within CCNA_03753at 3923.145 kb on + strand, within CCNA_03753at 3923.145 kb on + strand, within CCNA_03753at 3923.145 kb on + strand, within CCNA_03753at 3923.145 kb on + strand, within CCNA_03753at 3923.146 kb on + strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.153 kb on - strand, within CCNA_03753at 3923.155 kb on + strand, within CCNA_03753at 3923.155 kb on + strand, within CCNA_03753at 3923.163 kb on - strand, within CCNA_03753at 3923.183 kb on + strand, within CCNA_03753at 3923.186 kb on - strand, within CCNA_03753at 3923.192 kb on - strand, within CCNA_03753at 3923.227 kb on + strand, within CCNA_03753at 3923.235 kb on - strand, within CCNA_03753at 3923.254 kb on - strand, within CCNA_03753at 3923.286 kb on + strand, within CCNA_03753at 3923.313 kb on + strand, within CCNA_03753at 3923.314 kb on + strand, within CCNA_03753at 3923.318 kb on - strand, within CCNA_03753at 3923.331 kb on + strand, within CCNA_03753at 3923.371 kb on - strand, within CCNA_03753at 3923.374 kb on + strand, within CCNA_03753at 3923.413 kb on - strand, within CCNA_03753at 3923.468 kb on - strand, within CCNA_03753at 3923.517 kb on + strand, within CCNA_03753at 3923.517 kb on + strand, within CCNA_03753at 3923.522 kb on + strand, within CCNA_03753at 3923.525 kb on - strand, within CCNA_03753at 3923.530 kb on - strand, within CCNA_03753at 3923.558 kb on + strand, within CCNA_03753at 3923.576 kb on + strand, within CCNA_03753at 3923.597 kb on - strandat 3923.608 kb on + strandat 3924.492 kb on + strandat 3924.537 kb on - strandat 3924.582 kb on - strandat 3924.582 kb on - strandat 3924.585 kb on + strandat 3924.590 kb on + strandat 3924.592 kb on - strandat 3924.631 kb on - strandat 3924.650 kb on + strand, within CCNA_03755at 3924.650 kb on + strand, within CCNA_03755at 3924.658 kb on - strand, within CCNA_03755at 3924.658 kb on - strand, within CCNA_03755

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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3,921,582 - +0.5
3,921,584 + -0.1
3,921,592 - +0.2
3,921,614 + +0.6
3,921,614 + +0.5
3,921,615 + -0.7
3,921,615 + -0.1
3,921,647 - -0.9
3,921,650 + -0.3
3,921,685 - -1.6
3,922,558 + +0.2
3,922,576 + -0.1
3,922,577 + -0.4
3,922,577 + +0.1
3,922,585 - -0.2
3,922,585 - -0.1
3,922,621 + +0.4
3,922,629 - +0.2
3,922,669 - -0.7
3,922,671 - -1.0
3,922,723 + CCNA_03753 0.13 -0.1
3,922,723 + CCNA_03753 0.13 +0.2
3,922,837 + CCNA_03753 0.23 +0.3
3,922,845 - CCNA_03753 0.24 -2.0
3,922,845 - CCNA_03753 0.24 +0.5
3,922,878 - CCNA_03753 0.26 +0.6
3,922,938 + CCNA_03753 0.32 +0.1
3,922,958 + CCNA_03753 0.34 -0.2
3,922,999 + CCNA_03753 0.37 +0.5
3,923,126 - CCNA_03753 0.48 -0.1
3,923,145 + CCNA_03753 0.50 +0.1
3,923,145 + CCNA_03753 0.50 +0.4
3,923,145 + CCNA_03753 0.50 -0.5
3,923,145 + CCNA_03753 0.50 -0.8
3,923,145 + CCNA_03753 0.50 -1.3
3,923,145 + CCNA_03753 0.50 -0.6
3,923,146 + CCNA_03753 0.50 -0.3
3,923,153 - CCNA_03753 0.51 +0.4
3,923,153 - CCNA_03753 0.51 -0.1
3,923,153 - CCNA_03753 0.51 +0.8
3,923,153 - CCNA_03753 0.51 -0.2
3,923,153 - CCNA_03753 0.51 +0.1
3,923,153 - CCNA_03753 0.51 +0.1
3,923,155 + CCNA_03753 0.51 -0.2
3,923,155 + CCNA_03753 0.51 +0.9
3,923,163 - CCNA_03753 0.52 -1.3
3,923,183 + CCNA_03753 0.53 -0.5
3,923,186 - CCNA_03753 0.54 -0.7
3,923,192 - CCNA_03753 0.54 -0.3
3,923,227 + CCNA_03753 0.57 -0.5
3,923,235 - CCNA_03753 0.58 -0.3
3,923,254 - CCNA_03753 0.60 +0.3
3,923,286 + CCNA_03753 0.63 +0.7
3,923,313 + CCNA_03753 0.65 -0.4
3,923,314 + CCNA_03753 0.65 +0.4
3,923,318 - CCNA_03753 0.65 -0.1
3,923,331 + CCNA_03753 0.66 +0.1
3,923,371 - CCNA_03753 0.70 +0.2
3,923,374 + CCNA_03753 0.70 -0.2
3,923,413 - CCNA_03753 0.74 +0.5
3,923,468 - CCNA_03753 0.79 +1.3
3,923,517 + CCNA_03753 0.83 +0.0
3,923,517 + CCNA_03753 0.83 +0.0
3,923,522 + CCNA_03753 0.83 -0.1
3,923,525 - CCNA_03753 0.84 -0.9
3,923,530 - CCNA_03753 0.84 +0.1
3,923,558 + CCNA_03753 0.87 -1.8
3,923,576 + CCNA_03753 0.88 +0.0
3,923,597 - +1.6
3,923,608 + +0.1
3,924,492 + +0.7
3,924,537 - +0.3
3,924,582 - -0.4
3,924,582 - -1.0
3,924,585 + +0.0
3,924,590 + +0.6
3,924,592 - +0.3
3,924,631 - -1.3
3,924,650 + CCNA_03755 0.11 -1.8
3,924,650 + CCNA_03755 0.11 -1.3
3,924,658 - CCNA_03755 0.11 -2.1
3,924,658 - CCNA_03755 0.11 -2.6

Or see this region's nucleotide sequence