Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03582 and CCNA_03583 overlap by 4 nucleotides CCNA_03583 and CCNA_03584 are separated by 139 nucleotides CCNA_03584 and CCNA_03585 are separated by 79 nucleotides CCNA_03585 and CCNA_03586 overlap by 4 nucleotides
CCNA_03582: CCNA_03582 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,738,874 to 3,739,671
_03582
CCNA_03583: CCNA_03583 - hypothetical protein, at 3,739,668 to 3,739,859
_03583
CCNA_03584: CCNA_03584 - histidine phosphotransferase ChpT, at 3,739,999 to 3,740,676
_03584
CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133
_03585
CCNA_03586: CCNA_03586 - chemotaxis protein methyltransferase, at 3,741,130 to 3,741,960
_03586
Position (kb)
3739
3740
3741 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3739.630 kb on - strand at 3739.666 kb on + strand at 3739.674 kb on - strand at 3739.722 kb on - strand, within CCNA_03583 at 3739.759 kb on + strand, within CCNA_03583 at 3739.785 kb on + strand, within CCNA_03583 at 3739.786 kb on + strand, within CCNA_03583 at 3739.788 kb on - strand, within CCNA_03583 at 3739.791 kb on + strand, within CCNA_03583 at 3739.799 kb on - strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.819 kb on - strand, within CCNA_03583 at 3739.846 kb on - strand at 3739.896 kb on - strand at 3739.950 kb on + strand at 3739.950 kb on + strand at 3739.950 kb on + strand at 3739.953 kb on - strand at 3739.958 kb on - strand at 3739.963 kb on - strand at 3739.963 kb on - strand at 3739.980 kb on - strand at 3739.985 kb on - strand at 3740.015 kb on - strand at 3740.721 kb on + strand at 3740.721 kb on + strand at 3740.728 kb on - strand at 3740.753 kb on + strand at 3740.761 kb on - strand at 3740.761 kb on - strand at 3740.761 kb on - strand at 3740.768 kb on + strand at 3740.775 kb on + strand at 3740.776 kb on - strand at 3740.776 kb on - strand at 3740.840 kb on + strand, within CCNA_03585 at 3740.848 kb on - strand, within CCNA_03585 at 3740.907 kb on + strand, within CCNA_03585 at 3740.912 kb on + strand, within CCNA_03585 at 3740.944 kb on - strand, within CCNA_03585 at 3740.999 kb on + strand, within CCNA_03585 at 3741.007 kb on - strand, within CCNA_03585 at 3741.007 kb on - strand, within CCNA_03585 at 3741.007 kb on - strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.014 kb on + strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.022 kb on - strand, within CCNA_03585 at 3741.024 kb on + strand, within CCNA_03585 at 3741.024 kb on + strand, within CCNA_03585 at 3741.032 kb on - strand, within CCNA_03585 at 3741.032 kb on - strand, within CCNA_03585 at 3741.070 kb on - strand, within CCNA_03585 at 3741.079 kb on - strand, within CCNA_03585 at 3741.081 kb on - strand, within CCNA_03585 at 3741.127 kb on + strand at 3741.150 kb on - strand at 3741.151 kb on - strand at 3741.160 kb on + strand at 3741.168 kb on - strand at 3741.199 kb on + strand at 3741.258 kb on - strand, within CCNA_03586 at 3741.259 kb on - strand, within CCNA_03586 at 3741.273 kb on + strand, within CCNA_03586 at 3741.281 kb on - strand, within CCNA_03586 at 3741.309 kb on + strand, within CCNA_03586 at 3741.309 kb on + strand, within CCNA_03586 at 3741.317 kb on - strand, within CCNA_03586 at 3741.374 kb on + strand, within CCNA_03586 at 3741.508 kb on + strand, within CCNA_03586 at 3741.528 kb on + strand, within CCNA_03586 at 3741.541 kb on + strand, within CCNA_03586
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 3,739,630 - +1.2 3,739,666 + -0.8 3,739,674 - -0.2 3,739,722 - CCNA_03583 0.28 +0.2 3,739,759 + CCNA_03583 0.47 -0.3 3,739,785 + CCNA_03583 0.61 +1.4 3,739,786 + CCNA_03583 0.61 -0.4 3,739,788 - CCNA_03583 0.62 -1.0 3,739,791 + CCNA_03583 0.64 -2.0 3,739,799 - CCNA_03583 0.68 -0.3 3,739,811 + CCNA_03583 0.74 -0.7 3,739,819 - CCNA_03583 0.79 +0.6 3,739,846 - +0.4 3,739,896 - +0.1 3,739,950 + -3.4 3,739,950 + +0.0 3,739,950 + -0.4 3,739,953 - +0.5 3,739,958 - -1.0 3,739,963 - -0.2 3,739,963 - +0.3 3,739,980 - +0.5 3,739,985 - +1.2 3,740,015 - +0.6 3,740,721 + +0.9 3,740,721 + +0.1 3,740,728 - +0.3 3,740,753 + +0.5 3,740,761 - -0.2 3,740,761 - -0.9 3,740,761 - -1.5 3,740,768 + +0.2 3,740,775 + +0.2 3,740,776 - -0.4 3,740,776 - -0.0 3,740,840 + CCNA_03585 0.22 +0.4 3,740,848 - CCNA_03585 0.24 +0.4 3,740,907 + CCNA_03585 0.40 -0.5 3,740,912 + CCNA_03585 0.41 -0.4 3,740,944 - CCNA_03585 0.50 -0.0 3,740,999 + CCNA_03585 0.64 +0.2 3,741,007 - CCNA_03585 0.66 -0.9 3,741,007 - CCNA_03585 0.66 -0.6 3,741,007 - CCNA_03585 0.66 +0.3 3,741,014 + CCNA_03585 0.68 -0.5 3,741,014 + CCNA_03585 0.68 +0.6 3,741,014 + CCNA_03585 0.68 -0.7 3,741,014 + CCNA_03585 0.68 -0.4 3,741,014 + CCNA_03585 0.68 +0.4 3,741,014 + CCNA_03585 0.68 +0.4 3,741,014 + CCNA_03585 0.68 -0.2 3,741,014 + CCNA_03585 0.68 -0.3 3,741,014 + CCNA_03585 0.68 -0.3 3,741,014 + CCNA_03585 0.68 +0.6 3,741,022 - CCNA_03585 0.70 +0.0 3,741,022 - CCNA_03585 0.70 -0.5 3,741,022 - CCNA_03585 0.70 -1.5 3,741,022 - CCNA_03585 0.70 +0.5 3,741,022 - CCNA_03585 0.70 +1.3 3,741,022 - CCNA_03585 0.70 -0.5 3,741,022 - CCNA_03585 0.70 -1.5 3,741,022 - CCNA_03585 0.70 -1.0 3,741,022 - CCNA_03585 0.70 +0.3 3,741,024 + CCNA_03585 0.71 +0.4 3,741,024 + CCNA_03585 0.71 +0.8 3,741,032 - CCNA_03585 0.73 -0.7 3,741,032 - CCNA_03585 0.73 +1.0 3,741,070 - CCNA_03585 0.83 +0.2 3,741,079 - CCNA_03585 0.85 -1.6 3,741,081 - CCNA_03585 0.86 -1.6 3,741,127 + -0.5 3,741,150 - +0.6 3,741,151 - -0.2 3,741,160 + +0.2 3,741,168 - -0.6 3,741,199 + -0.0 3,741,258 - CCNA_03586 0.15 -0.9 3,741,259 - CCNA_03586 0.16 +0.0 3,741,273 + CCNA_03586 0.17 +0.0 3,741,281 - CCNA_03586 0.18 +0.3 3,741,309 + CCNA_03586 0.22 +0.0 3,741,309 + CCNA_03586 0.22 -0.4 3,741,317 - CCNA_03586 0.23 +0.9 3,741,374 + CCNA_03586 0.29 +0.2 3,741,508 + CCNA_03586 0.45 +1.3 3,741,528 + CCNA_03586 0.48 -0.3 3,741,541 + CCNA_03586 0.49 -0.2
Or see this region's nucleotide sequence