Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02643 and CCNA_02644 overlap by 4 nucleotides CCNA_02644 and CCNA_02645 overlap by 4 nucleotides CCNA_02645 and CCNA_02646 overlap by 4 nucleotides
CCNA_02643: CCNA_02643 - penicillin-binding protein FtsI, at 2,796,353 to 2,798,122
_02643
CCNA_02644: CCNA_02644 - cell division protein FtsL, at 2,798,119 to 2,798,562
_02644
CCNA_02645: CCNA_02645 - S-adenosyl-methyltransferase MraW, at 2,798,559 to 2,799,494
_02645
CCNA_02646: CCNA_02646 - cell division protein MraZ, at 2,799,491 to 2,799,961
_02646
Position (kb)
2798
2799
2800 Strain fitness (log2 ratio)
-2
-1
0
1 at 2798.130 kb on - strand at 2798.198 kb on + strand, within CCNA_02644 at 2798.231 kb on + strand, within CCNA_02644 at 2798.239 kb on - strand, within CCNA_02644 at 2798.239 kb on - strand, within CCNA_02644 at 2798.239 kb on - strand, within CCNA_02644 at 2798.580 kb on - strand at 2798.715 kb on - strand, within CCNA_02645 at 2798.810 kb on + strand, within CCNA_02645 at 2798.928 kb on - strand, within CCNA_02645 at 2799.078 kb on - strand, within CCNA_02645 at 2799.093 kb on - strand, within CCNA_02645 at 2799.105 kb on - strand, within CCNA_02645 at 2799.477 kb on - strand at 2799.504 kb on + strand at 2799.534 kb on - strand at 2799.702 kb on + strand, within CCNA_02646 at 2799.707 kb on - strand, within CCNA_02646 at 2799.707 kb on - strand, within CCNA_02646 at 2799.789 kb on - strand, within CCNA_02646 at 2799.834 kb on - strand, within CCNA_02646 at 2799.842 kb on - strand, within CCNA_02646 at 2799.966 kb on + strand at 2799.966 kb on + strand at 2799.973 kb on - strand at 2800.221 kb on + strand at 2800.244 kb on + strand at 2800.318 kb on + strand at 2800.326 kb on - strand at 2800.326 kb on - strand at 2800.326 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 2,798,130 - -0.4 2,798,198 + CCNA_02644 0.18 -2.0 2,798,231 + CCNA_02644 0.25 -0.8 2,798,239 - CCNA_02644 0.27 -0.7 2,798,239 - CCNA_02644 0.27 +0.1 2,798,239 - CCNA_02644 0.27 -0.1 2,798,580 - -0.1 2,798,715 - CCNA_02645 0.17 +0.0 2,798,810 + CCNA_02645 0.27 +0.4 2,798,928 - CCNA_02645 0.39 +0.1 2,799,078 - CCNA_02645 0.55 -0.2 2,799,093 - CCNA_02645 0.57 -0.8 2,799,105 - CCNA_02645 0.58 +0.4 2,799,477 - +0.4 2,799,504 + -0.5 2,799,534 - +0.8 2,799,702 + CCNA_02646 0.45 -0.4 2,799,707 - CCNA_02646 0.46 -0.1 2,799,707 - CCNA_02646 0.46 +1.6 2,799,789 - CCNA_02646 0.63 -0.1 2,799,834 - CCNA_02646 0.73 +0.0 2,799,842 - CCNA_02646 0.75 -0.6 2,799,966 + +0.4 2,799,966 + +1.1 2,799,973 - +0.1 2,800,221 + +0.9 2,800,244 + -0.6 2,800,318 + -0.8 2,800,326 - +1.4 2,800,326 - +0.3 2,800,326 - -0.4
Or see this region's nucleotide sequence