Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01758

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01756 and CCNA_01757 are separated by 63 nucleotidesCCNA_01757 and CCNA_01758 are separated by 44 nucleotidesCCNA_01758 and CCNA_01759 overlap by 4 nucleotides CCNA_01756: CCNA_01756 - hypothetical protein, at 1,883,535 to 1,883,654 _01756 CCNA_01757: CCNA_01757 - dimethyladenosine transferase, at 1,883,718 to 1,884,548 _01757 CCNA_01758: CCNA_01758 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,884,593 to 1,885,594 _01758 CCNA_01759: CCNA_01759 - peptidyl-prolyl cis-trans isomerase, at 1,885,591 to 1,886,940 _01759 Position (kb) 1884 1885 1886Strain fitness (log2 ratio) -2 -1 0 1 2at 1883.631 kb on + strand, within CCNA_01756at 1883.634 kb on - strand, within CCNA_01756at 1883.639 kb on - strand, within CCNA_01756at 1883.644 kb on - strandat 1883.686 kb on - strandat 1883.707 kb on + strandat 1883.753 kb on + strandat 1883.753 kb on + strandat 1883.761 kb on - strandat 1883.840 kb on - strand, within CCNA_01757at 1883.963 kb on + strand, within CCNA_01757at 1884.003 kb on + strand, within CCNA_01757at 1884.021 kb on - strand, within CCNA_01757at 1884.021 kb on - strand, within CCNA_01757at 1884.037 kb on - strand, within CCNA_01757at 1884.037 kb on - strand, within CCNA_01757at 1884.138 kb on - strand, within CCNA_01757at 1884.178 kb on + strand, within CCNA_01757at 1884.178 kb on + strand, within CCNA_01757at 1884.366 kb on + strand, within CCNA_01757at 1884.393 kb on - strand, within CCNA_01757at 1884.456 kb on - strand, within CCNA_01757at 1884.471 kb on - strandat 1884.486 kb on - strandat 1884.499 kb on - strandat 1884.542 kb on + strandat 1884.550 kb on - strandat 1884.550 kb on - strandat 1884.556 kb on + strandat 1884.556 kb on + strandat 1884.573 kb on - strandat 1884.590 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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1,883,631 + CCNA_01756 0.80 +0.0
1,883,634 - CCNA_01756 0.82 +0.3
1,883,639 - CCNA_01756 0.87 -2.2
1,883,644 - +0.2
1,883,686 - +0.1
1,883,707 + -1.8
1,883,753 + +1.2
1,883,753 + +1.1
1,883,761 - -0.3
1,883,840 - CCNA_01757 0.15 -0.6
1,883,963 + CCNA_01757 0.29 +0.1
1,884,003 + CCNA_01757 0.34 -1.3
1,884,021 - CCNA_01757 0.36 -0.8
1,884,021 - CCNA_01757 0.36 +0.6
1,884,037 - CCNA_01757 0.38 +1.0
1,884,037 - CCNA_01757 0.38 -0.8
1,884,138 - CCNA_01757 0.51 -2.0
1,884,178 + CCNA_01757 0.55 +0.9
1,884,178 + CCNA_01757 0.55 -0.7
1,884,366 + CCNA_01757 0.78 -1.8
1,884,393 - CCNA_01757 0.81 -2.1
1,884,456 - CCNA_01757 0.89 +0.7
1,884,471 - +2.2
1,884,486 - -0.2
1,884,499 - +2.2
1,884,542 + +0.2
1,884,550 - +0.8
1,884,550 - +0.1
1,884,556 + -0.2
1,884,556 + +1.2
1,884,573 - +0.4
1,884,590 + -1.5

Or see this region's nucleotide sequence