Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01677

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01676 and CCNA_01677 are separated by 101 nucleotidesCCNA_01677 and CCNA_01678 are separated by 0 nucleotides CCNA_01676: CCNA_01676 - hypothetical protein, at 1,799,591 to 1,803,712 _01676 CCNA_01677: CCNA_01677 - carboxypeptidase G2 precursor, at 1,803,814 to 1,805,058 _01677 CCNA_01678: CCNA_01678 - arginine N-succinyltransferase, beta chain, at 1,805,059 to 1,806,063 _01678 Position (kb) 1803 1804 1805 1806Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1803.000 kb on + strand, within CCNA_01676at 1803.781 kb on + strandat 1803.824 kb on + strandat 1804.198 kb on - strand, within CCNA_01677at 1804.248 kb on + strand, within CCNA_01677at 1804.330 kb on + strand, within CCNA_01677at 1804.333 kb on - strand, within CCNA_01677at 1804.339 kb on - strand, within CCNA_01677at 1804.567 kb on - strand, within CCNA_01677at 1804.666 kb on + strand, within CCNA_01677at 1804.674 kb on - strand, within CCNA_01677at 1804.716 kb on + strand, within CCNA_01677at 1804.761 kb on + strand, within CCNA_01677at 1804.769 kb on - strand, within CCNA_01677at 1804.794 kb on + strand, within CCNA_01677at 1804.802 kb on - strand, within CCNA_01677at 1804.827 kb on - strand, within CCNA_01677at 1804.850 kb on - strand, within CCNA_01677at 1804.851 kb on + strand, within CCNA_01677at 1804.870 kb on - strand, within CCNA_01677at 1804.877 kb on + strand, within CCNA_01677at 1805.041 kb on + strandat 1805.041 kb on + strandat 1805.184 kb on + strand, within CCNA_01678at 1805.192 kb on - strand, within CCNA_01678at 1805.195 kb on + strand, within CCNA_01678at 1805.266 kb on + strand, within CCNA_01678at 1805.341 kb on + strand, within CCNA_01678at 1805.348 kb on - strand, within CCNA_01678at 1805.392 kb on - strand, within CCNA_01678at 1805.403 kb on - strand, within CCNA_01678at 1805.405 kb on + strand, within CCNA_01678at 1805.414 kb on + strand, within CCNA_01678at 1805.437 kb on - strand, within CCNA_01678at 1805.451 kb on + strand, within CCNA_01678at 1805.465 kb on - strand, within CCNA_01678at 1805.504 kb on + strand, within CCNA_01678at 1805.563 kb on - strand, within CCNA_01678at 1805.563 kb on - strand, within CCNA_01678at 1805.570 kb on + strand, within CCNA_01678at 1805.645 kb on - strand, within CCNA_01678at 1805.673 kb on - strand, within CCNA_01678at 1805.704 kb on - strand, within CCNA_01678at 1805.735 kb on + strand, within CCNA_01678at 1805.735 kb on + strand, within CCNA_01678at 1805.830 kb on + strand, within CCNA_01678at 1805.853 kb on + strand, within CCNA_01678at 1805.853 kb on + strand, within CCNA_01678at 1805.879 kb on - strand, within CCNA_01678at 1805.886 kb on + strand, within CCNA_01678at 1805.928 kb on - strand, within CCNA_01678at 1805.933 kb on - strand, within CCNA_01678

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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1,803,000 + CCNA_01676 0.83 +0.9
1,803,781 + +0.7
1,803,824 + -0.7
1,804,198 - CCNA_01677 0.31 +0.5
1,804,248 + CCNA_01677 0.35 +2.9
1,804,330 + CCNA_01677 0.41 +0.9
1,804,333 - CCNA_01677 0.42 -0.8
1,804,339 - CCNA_01677 0.42 +0.5
1,804,567 - CCNA_01677 0.60 +0.9
1,804,666 + CCNA_01677 0.68 +0.2
1,804,674 - CCNA_01677 0.69 +0.3
1,804,716 + CCNA_01677 0.72 +0.7
1,804,761 + CCNA_01677 0.76 -0.3
1,804,769 - CCNA_01677 0.77 +0.5
1,804,794 + CCNA_01677 0.79 -0.3
1,804,802 - CCNA_01677 0.79 -1.3
1,804,827 - CCNA_01677 0.81 +1.6
1,804,850 - CCNA_01677 0.83 -0.9
1,804,851 + CCNA_01677 0.83 -0.0
1,804,870 - CCNA_01677 0.85 -0.8
1,804,877 + CCNA_01677 0.85 -0.2
1,805,041 + +1.1
1,805,041 + -0.1
1,805,184 + CCNA_01678 0.12 +1.8
1,805,192 - CCNA_01678 0.13 -0.3
1,805,195 + CCNA_01678 0.14 +1.8
1,805,266 + CCNA_01678 0.21 +0.1
1,805,341 + CCNA_01678 0.28 -0.2
1,805,348 - CCNA_01678 0.29 -0.1
1,805,392 - CCNA_01678 0.33 -0.6
1,805,403 - CCNA_01678 0.34 -2.1
1,805,405 + CCNA_01678 0.34 +0.7
1,805,414 + CCNA_01678 0.35 +0.4
1,805,437 - CCNA_01678 0.38 +0.6
1,805,451 + CCNA_01678 0.39 -0.2
1,805,465 - CCNA_01678 0.40 +0.8
1,805,504 + CCNA_01678 0.44 +0.1
1,805,563 - CCNA_01678 0.50 +0.3
1,805,563 - CCNA_01678 0.50 -0.1
1,805,570 + CCNA_01678 0.51 +0.9
1,805,645 - CCNA_01678 0.58 -0.7
1,805,673 - CCNA_01678 0.61 +0.5
1,805,704 - CCNA_01678 0.64 -2.8
1,805,735 + CCNA_01678 0.67 +0.6
1,805,735 + CCNA_01678 0.67 +0.0
1,805,830 + CCNA_01678 0.77 +1.1
1,805,853 + CCNA_01678 0.79 +0.8
1,805,853 + CCNA_01678 0.79 +1.4
1,805,879 - CCNA_01678 0.82 +0.9
1,805,886 + CCNA_01678 0.82 +0.3
1,805,928 - CCNA_01678 0.86 +0.3
1,805,933 - CCNA_01678 0.87 -0.7

Or see this region's nucleotide sequence