Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01675 and CCNA_01676 are separated by 71 nucleotides CCNA_01676 and CCNA_01677 are separated by 101 nucleotides
CCNA_01675: CCNA_01675 - outer membrane protein, at 1,797,735 to 1,799,519
_01675
CCNA_01676: CCNA_01676 - hypothetical protein, at 1,799,591 to 1,803,712
_01676
CCNA_01677: CCNA_01677 - carboxypeptidase G2 precursor, at 1,803,814 to 1,805,058
_01677
Position (kb)
1799
1800
1801
1802
1803
1804 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1799.096 kb on + strand, within CCNA_01675 at 1799.096 kb on + strand, within CCNA_01675 at 1799.530 kb on + strand at 1799.535 kb on + strand at 1799.535 kb on + strand at 1799.535 kb on + strand at 1799.535 kb on + strand at 1799.535 kb on + strand at 1799.538 kb on - strand at 1799.538 kb on - strand at 1799.622 kb on + strand at 1799.632 kb on + strand at 1799.640 kb on - strand at 1799.985 kb on - strand at 1801.147 kb on + strand, within CCNA_01676 at 1801.345 kb on + strand, within CCNA_01676 at 1801.666 kb on + strand, within CCNA_01676 at 1801.815 kb on + strand, within CCNA_01676 at 1802.122 kb on + strand, within CCNA_01676 at 1802.483 kb on + strand, within CCNA_01676 at 1803.000 kb on + strand, within CCNA_01676 at 1803.781 kb on + strand at 1803.824 kb on + strand at 1804.198 kb on - strand, within CCNA_01677 at 1804.248 kb on + strand, within CCNA_01677 at 1804.330 kb on + strand, within CCNA_01677 at 1804.333 kb on - strand, within CCNA_01677 at 1804.339 kb on - strand, within CCNA_01677 at 1804.567 kb on - strand, within CCNA_01677 at 1804.666 kb on + strand, within CCNA_01677 at 1804.674 kb on - strand, within CCNA_01677
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 1,799,096 + CCNA_01675 0.76 -0.7 1,799,096 + CCNA_01675 0.76 +0.5 1,799,530 + -0.5 1,799,535 + -0.8 1,799,535 + -0.7 1,799,535 + -0.8 1,799,535 + -1.6 1,799,535 + -0.1 1,799,538 - +0.9 1,799,538 - -0.5 1,799,622 + +0.3 1,799,632 + +1.3 1,799,640 - -2.4 1,799,985 - +0.9 1,801,147 + CCNA_01676 0.38 -0.1 1,801,345 + CCNA_01676 0.43 +0.3 1,801,666 + CCNA_01676 0.50 +0.1 1,801,815 + CCNA_01676 0.54 +0.3 1,802,122 + CCNA_01676 0.61 -0.3 1,802,483 + CCNA_01676 0.70 -0.1 1,803,000 + CCNA_01676 0.83 +0.9 1,803,781 + +0.7 1,803,824 + -0.7 1,804,198 - CCNA_01677 0.31 +0.5 1,804,248 + CCNA_01677 0.35 +2.9 1,804,330 + CCNA_01677 0.41 +0.9 1,804,333 - CCNA_01677 0.42 -0.8 1,804,339 - CCNA_01677 0.42 +0.5 1,804,567 - CCNA_01677 0.60 +0.9 1,804,666 + CCNA_01677 0.68 +0.2 1,804,674 - CCNA_01677 0.69 +0.3
Or see this region's nucleotide sequence