Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01609

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01607 and CCNA_01608 overlap by 38 nucleotidesCCNA_01608 and CCNA_01609 are separated by 49 nucleotidesCCNA_01609 and CCNA_03955 are separated by 97 nucleotidesCCNA_03955 and CCNA_01610 are separated by 87 nucleotides CCNA_01607: CCNA_01607 - SNARE associated protein family, at 1,726,781 to 1,727,500 _01607 CCNA_01608: CCNA_01608 - TetR-family transcriptional regulator, at 1,727,463 to 1,728,137 _01608 CCNA_01609: CCNA_01609 - alkyl sulfatase, at 1,728,187 to 1,730,142 _01609 CCNA_03955: CCNA_03955 - hypothetical protein, at 1,730,240 to 1,730,296 _03955 CCNA_01610: CCNA_01610 - 2-isopropylmalate synthase, at 1,730,384 to 1,731,958 _01610 Position (kb) 1728 1729 1730 1731Strain fitness (log2 ratio) -2 -1 0 1 2at 1727.253 kb on - strand, within CCNA_01607at 1727.434 kb on + strandat 1727.489 kb on + strandat 1727.494 kb on + strandat 1727.502 kb on - strandat 1727.512 kb on + strandat 1727.522 kb on - strandat 1727.546 kb on + strand, within CCNA_01608at 1727.554 kb on - strand, within CCNA_01608at 1727.554 kb on - strand, within CCNA_01608at 1727.599 kb on - strand, within CCNA_01608at 1727.625 kb on + strand, within CCNA_01608at 1727.635 kb on - strand, within CCNA_01608at 1727.635 kb on - strand, within CCNA_01608at 1727.670 kb on + strand, within CCNA_01608at 1727.678 kb on - strand, within CCNA_01608at 1727.678 kb on - strand, within CCNA_01608at 1727.679 kb on - strand, within CCNA_01608at 1727.700 kb on + strand, within CCNA_01608at 1727.783 kb on + strand, within CCNA_01608at 1727.815 kb on + strand, within CCNA_01608at 1727.840 kb on + strand, within CCNA_01608at 1727.840 kb on + strand, within CCNA_01608at 1727.848 kb on - strand, within CCNA_01608at 1727.859 kb on - strand, within CCNA_01608at 1727.880 kb on - strand, within CCNA_01608at 1727.929 kb on + strand, within CCNA_01608at 1727.937 kb on - strand, within CCNA_01608at 1728.005 kb on - strand, within CCNA_01608at 1728.031 kb on + strand, within CCNA_01608at 1728.041 kb on + strand, within CCNA_01608at 1728.056 kb on + strand, within CCNA_01608at 1728.058 kb on + strand, within CCNA_01608at 1728.138 kb on - strandat 1728.306 kb on - strandat 1728.411 kb on - strand, within CCNA_01609at 1728.418 kb on + strand, within CCNA_01609at 1728.489 kb on + strand, within CCNA_01609at 1728.489 kb on + strand, within CCNA_01609at 1728.494 kb on - strand, within CCNA_01609at 1728.497 kb on - strand, within CCNA_01609at 1728.497 kb on - strand, within CCNA_01609at 1728.497 kb on - strand, within CCNA_01609at 1728.504 kb on + strand, within CCNA_01609at 1728.524 kb on + strand, within CCNA_01609at 1728.532 kb on - strand, within CCNA_01609at 1728.532 kb on - strand, within CCNA_01609at 1728.624 kb on + strand, within CCNA_01609at 1728.647 kb on - strand, within CCNA_01609at 1728.652 kb on - strand, within CCNA_01609at 1728.666 kb on + strand, within CCNA_01609at 1728.678 kb on + strand, within CCNA_01609at 1728.678 kb on + strand, within CCNA_01609at 1728.678 kb on + strand, within CCNA_01609at 1728.679 kb on + strand, within CCNA_01609at 1728.681 kb on - strand, within CCNA_01609at 1728.686 kb on - strand, within CCNA_01609at 1728.686 kb on - strand, within CCNA_01609at 1728.686 kb on - strand, within CCNA_01609at 1728.686 kb on - strand, within CCNA_01609at 1728.686 kb on - strand, within CCNA_01609at 1728.686 kb on - strand, within CCNA_01609at 1728.688 kb on - strand, within CCNA_01609at 1728.688 kb on - strand, within CCNA_01609at 1728.690 kb on + strand, within CCNA_01609at 1728.698 kb on - strand, within CCNA_01609at 1728.715 kb on + strand, within CCNA_01609at 1728.764 kb on - strand, within CCNA_01609at 1728.807 kb on + strand, within CCNA_01609at 1728.807 kb on - strand, within CCNA_01609at 1728.823 kb on + strand, within CCNA_01609at 1728.831 kb on - strand, within CCNA_01609at 1728.880 kb on + strand, within CCNA_01609at 1728.880 kb on + strand, within CCNA_01609at 1728.899 kb on - strand, within CCNA_01609at 1728.901 kb on + strand, within CCNA_01609at 1728.901 kb on + strand, within CCNA_01609at 1728.901 kb on + strand, within CCNA_01609at 1728.909 kb on - strand, within CCNA_01609at 1728.909 kb on - strand, within CCNA_01609at 1728.965 kb on + strand, within CCNA_01609at 1728.976 kb on + strand, within CCNA_01609at 1728.981 kb on + strand, within CCNA_01609at 1728.985 kb on - strand, within CCNA_01609at 1728.985 kb on - strand, within CCNA_01609at 1728.986 kb on + strand, within CCNA_01609at 1728.986 kb on + strand, within CCNA_01609at 1728.987 kb on + strand, within CCNA_01609at 1729.072 kb on - strand, within CCNA_01609at 1729.076 kb on - strand, within CCNA_01609at 1729.085 kb on + strand, within CCNA_01609at 1729.104 kb on + strand, within CCNA_01609at 1729.112 kb on - strand, within CCNA_01609at 1729.131 kb on - strand, within CCNA_01609at 1729.143 kb on + strand, within CCNA_01609at 1729.143 kb on + strand, within CCNA_01609at 1729.143 kb on + strand, within CCNA_01609at 1729.143 kb on + strand, within CCNA_01609at 1729.143 kb on + strand, within CCNA_01609at 1729.143 kb on + strand, within CCNA_01609at 1729.143 kb on + strand, within CCNA_01609at 1729.145 kb on - strand, within CCNA_01609at 1729.151 kb on - strand, within CCNA_01609at 1729.151 kb on - strand, within CCNA_01609at 1729.151 kb on - strand, within CCNA_01609at 1729.151 kb on - strand, within CCNA_01609at 1729.177 kb on - strand, within CCNA_01609at 1729.243 kb on - strand, within CCNA_01609at 1729.247 kb on + strand, within CCNA_01609at 1729.250 kb on - strand, within CCNA_01609at 1729.250 kb on - strand, within CCNA_01609at 1729.273 kb on + strand, within CCNA_01609at 1729.347 kb on + strand, within CCNA_01609at 1729.347 kb on + strand, within CCNA_01609at 1729.355 kb on - strand, within CCNA_01609at 1729.369 kb on + strand, within CCNA_01609at 1729.369 kb on + strand, within CCNA_01609at 1729.402 kb on - strand, within CCNA_01609at 1729.439 kb on + strand, within CCNA_01609at 1729.476 kb on - strand, within CCNA_01609at 1729.503 kb on + strand, within CCNA_01609at 1729.516 kb on + strand, within CCNA_01609at 1729.524 kb on - strand, within CCNA_01609at 1729.526 kb on + strand, within CCNA_01609at 1729.536 kb on + strand, within CCNA_01609at 1729.536 kb on + strand, within CCNA_01609at 1729.536 kb on + strand, within CCNA_01609at 1729.536 kb on + strand, within CCNA_01609at 1729.537 kb on + strand, within CCNA_01609at 1729.544 kb on - strand, within CCNA_01609at 1729.544 kb on - strand, within CCNA_01609at 1729.551 kb on - strand, within CCNA_01609at 1729.561 kb on + strand, within CCNA_01609at 1729.573 kb on + strand, within CCNA_01609at 1729.573 kb on + strand, within CCNA_01609at 1729.573 kb on + strand, within CCNA_01609at 1729.573 kb on + strand, within CCNA_01609at 1729.577 kb on - strand, within CCNA_01609at 1729.580 kb on + strand, within CCNA_01609at 1729.581 kb on - strand, within CCNA_01609at 1729.581 kb on - strand, within CCNA_01609at 1729.609 kb on + strand, within CCNA_01609at 1729.609 kb on + strand, within CCNA_01609at 1729.617 kb on - strand, within CCNA_01609at 1729.695 kb on + strand, within CCNA_01609at 1729.776 kb on + strand, within CCNA_01609at 1729.821 kb on - strand, within CCNA_01609at 1729.832 kb on + strand, within CCNA_01609at 1729.840 kb on - strand, within CCNA_01609at 1729.867 kb on + strand, within CCNA_01609at 1729.867 kb on + strand, within CCNA_01609at 1729.875 kb on - strand, within CCNA_01609at 1729.875 kb on - strand, within CCNA_01609at 1729.898 kb on + strand, within CCNA_01609at 1729.918 kb on + strand, within CCNA_01609at 1729.957 kb on - strandat 1729.995 kb on - strandat 1730.020 kb on + strandat 1730.046 kb on + strandat 1730.060 kb on - strandat 1730.066 kb on + strandat 1730.079 kb on - strandat 1730.079 kb on - strandat 1730.079 kb on - strandat 1730.101 kb on - strandat 1730.102 kb on - strandat 1730.108 kb on + strandat 1730.183 kb on + strandat 1730.307 kb on + strandat 1730.357 kb on + strandat 1730.440 kb on - strandat 1730.468 kb on + strandat 1730.583 kb on - strand, within CCNA_01610at 1730.593 kb on - strand, within CCNA_01610at 1730.595 kb on + strand, within CCNA_01610at 1730.788 kb on + strand, within CCNA_01610at 1730.799 kb on + strand, within CCNA_01610at 1730.799 kb on + strand, within CCNA_01610at 1730.799 kb on + strand, within CCNA_01610at 1730.807 kb on - strand, within CCNA_01610at 1730.807 kb on - strand, within CCNA_01610at 1730.807 kb on - strand, within CCNA_01610at 1730.834 kb on + strand, within CCNA_01610at 1730.862 kb on + strand, within CCNA_01610at 1730.870 kb on - strand, within CCNA_01610at 1730.917 kb on + strand, within CCNA_01610at 1730.925 kb on - strand, within CCNA_01610at 1730.948 kb on + strand, within CCNA_01610at 1731.014 kb on + strand, within CCNA_01610at 1731.037 kb on - strand, within CCNA_01610at 1731.044 kb on - strand, within CCNA_01610at 1731.049 kb on - strand, within CCNA_01610at 1731.105 kb on + strand, within CCNA_01610

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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1,727,253 - CCNA_01607 0.66 +0.4
1,727,434 + +0.8
1,727,489 + +0.5
1,727,494 + +1.5
1,727,502 - -0.4
1,727,512 + -1.9
1,727,522 - +1.8
1,727,546 + CCNA_01608 0.12 +0.6
1,727,554 - CCNA_01608 0.13 +0.4
1,727,554 - CCNA_01608 0.13 +0.4
1,727,599 - CCNA_01608 0.20 +0.5
1,727,625 + CCNA_01608 0.24 -0.5
1,727,635 - CCNA_01608 0.25 +0.5
1,727,635 - CCNA_01608 0.25 +1.6
1,727,670 + CCNA_01608 0.31 +0.2
1,727,678 - CCNA_01608 0.32 +1.0
1,727,678 - CCNA_01608 0.32 +0.8
1,727,679 - CCNA_01608 0.32 +0.1
1,727,700 + CCNA_01608 0.35 -0.4
1,727,783 + CCNA_01608 0.47 +0.4
1,727,815 + CCNA_01608 0.52 -0.3
1,727,840 + CCNA_01608 0.56 +0.1
1,727,840 + CCNA_01608 0.56 +0.0
1,727,848 - CCNA_01608 0.57 +0.8
1,727,859 - CCNA_01608 0.59 +0.9
1,727,880 - CCNA_01608 0.62 +0.4
1,727,929 + CCNA_01608 0.69 +0.5
1,727,937 - CCNA_01608 0.70 +0.4
1,728,005 - CCNA_01608 0.80 +0.3
1,728,031 + CCNA_01608 0.84 -0.5
1,728,041 + CCNA_01608 0.86 -1.1
1,728,056 + CCNA_01608 0.88 -0.0
1,728,058 + CCNA_01608 0.88 -0.1
1,728,138 - -0.5
1,728,306 - -2.5
1,728,411 - CCNA_01609 0.11 +1.7
1,728,418 + CCNA_01609 0.12 +0.9
1,728,489 + CCNA_01609 0.15 -0.8
1,728,489 + CCNA_01609 0.15 -0.1
1,728,494 - CCNA_01609 0.16 -0.5
1,728,497 - CCNA_01609 0.16 -2.1
1,728,497 - CCNA_01609 0.16 -0.6
1,728,497 - CCNA_01609 0.16 -0.3
1,728,504 + CCNA_01609 0.16 -1.0
1,728,524 + CCNA_01609 0.17 +0.2
1,728,532 - CCNA_01609 0.18 -2.0
1,728,532 - CCNA_01609 0.18 +0.8
1,728,624 + CCNA_01609 0.22 +0.4
1,728,647 - CCNA_01609 0.24 +2.2
1,728,652 - CCNA_01609 0.24 -1.1
1,728,666 + CCNA_01609 0.24 +0.3
1,728,678 + CCNA_01609 0.25 +0.3
1,728,678 + CCNA_01609 0.25 +0.6
1,728,678 + CCNA_01609 0.25 -1.9
1,728,679 + CCNA_01609 0.25 -2.0
1,728,681 - CCNA_01609 0.25 -0.4
1,728,686 - CCNA_01609 0.26 -0.5
1,728,686 - CCNA_01609 0.26 -1.3
1,728,686 - CCNA_01609 0.26 -0.6
1,728,686 - CCNA_01609 0.26 +0.3
1,728,686 - CCNA_01609 0.26 -0.8
1,728,686 - CCNA_01609 0.26 -0.0
1,728,688 - CCNA_01609 0.26 -1.5
1,728,688 - CCNA_01609 0.26 -0.8
1,728,690 + CCNA_01609 0.26 -0.9
1,728,698 - CCNA_01609 0.26 -0.4
1,728,715 + CCNA_01609 0.27 -2.5
1,728,764 - CCNA_01609 0.29 +1.0
1,728,807 + CCNA_01609 0.32 -0.5
1,728,807 - CCNA_01609 0.32 -1.8
1,728,823 + CCNA_01609 0.33 -0.3
1,728,831 - CCNA_01609 0.33 -1.3
1,728,880 + CCNA_01609 0.35 -0.4
1,728,880 + CCNA_01609 0.35 -1.0
1,728,899 - CCNA_01609 0.36 -0.8
1,728,901 + CCNA_01609 0.37 -1.0
1,728,901 + CCNA_01609 0.37 -1.6
1,728,901 + CCNA_01609 0.37 -1.4
1,728,909 - CCNA_01609 0.37 -0.3
1,728,909 - CCNA_01609 0.37 -1.1
1,728,965 + CCNA_01609 0.40 -0.8
1,728,976 + CCNA_01609 0.40 -0.0
1,728,981 + CCNA_01609 0.41 -0.5
1,728,985 - CCNA_01609 0.41 +1.1
1,728,985 - CCNA_01609 0.41 +0.3
1,728,986 + CCNA_01609 0.41 +0.3
1,728,986 + CCNA_01609 0.41 +0.6
1,728,987 + CCNA_01609 0.41 -0.6
1,729,072 - CCNA_01609 0.45 -0.3
1,729,076 - CCNA_01609 0.45 -1.2
1,729,085 + CCNA_01609 0.46 -1.0
1,729,104 + CCNA_01609 0.47 +0.3
1,729,112 - CCNA_01609 0.47 -0.6
1,729,131 - CCNA_01609 0.48 +0.3
1,729,143 + CCNA_01609 0.49 -0.9
1,729,143 + CCNA_01609 0.49 -1.6
1,729,143 + CCNA_01609 0.49 -0.6
1,729,143 + CCNA_01609 0.49 -1.5
1,729,143 + CCNA_01609 0.49 -1.7
1,729,143 + CCNA_01609 0.49 -2.0
1,729,143 + CCNA_01609 0.49 -0.4
1,729,145 - CCNA_01609 0.49 -0.1
1,729,151 - CCNA_01609 0.49 -1.3
1,729,151 - CCNA_01609 0.49 -0.1
1,729,151 - CCNA_01609 0.49 -0.7
1,729,151 - CCNA_01609 0.49 +1.2
1,729,177 - CCNA_01609 0.51 -1.6
1,729,243 - CCNA_01609 0.54 +0.6
1,729,247 + CCNA_01609 0.54 +0.0
1,729,250 - CCNA_01609 0.54 -1.3
1,729,250 - CCNA_01609 0.54 -0.7
1,729,273 + CCNA_01609 0.56 +0.2
1,729,347 + CCNA_01609 0.59 +0.9
1,729,347 + CCNA_01609 0.59 -0.3
1,729,355 - CCNA_01609 0.60 -0.5
1,729,369 + CCNA_01609 0.60 -2.2
1,729,369 + CCNA_01609 0.60 -0.8
1,729,402 - CCNA_01609 0.62 -0.2
1,729,439 + CCNA_01609 0.64 -1.1
1,729,476 - CCNA_01609 0.66 -0.7
1,729,503 + CCNA_01609 0.67 +0.1
1,729,516 + CCNA_01609 0.68 +0.3
1,729,524 - CCNA_01609 0.68 -0.6
1,729,526 + CCNA_01609 0.68 +1.9
1,729,536 + CCNA_01609 0.69 -0.1
1,729,536 + CCNA_01609 0.69 -1.3
1,729,536 + CCNA_01609 0.69 -1.6
1,729,536 + CCNA_01609 0.69 +0.0
1,729,537 + CCNA_01609 0.69 -1.2
1,729,544 - CCNA_01609 0.69 -0.3
1,729,544 - CCNA_01609 0.69 +0.8
1,729,551 - CCNA_01609 0.70 -0.9
1,729,561 + CCNA_01609 0.70 -2.4
1,729,573 + CCNA_01609 0.71 -0.5
1,729,573 + CCNA_01609 0.71 -1.5
1,729,573 + CCNA_01609 0.71 -0.7
1,729,573 + CCNA_01609 0.71 -0.8
1,729,577 - CCNA_01609 0.71 -1.1
1,729,580 + CCNA_01609 0.71 +0.3
1,729,581 - CCNA_01609 0.71 -2.1
1,729,581 - CCNA_01609 0.71 +0.3
1,729,609 + CCNA_01609 0.73 -0.7
1,729,609 + CCNA_01609 0.73 -1.1
1,729,617 - CCNA_01609 0.73 +0.5
1,729,695 + CCNA_01609 0.77 -0.2
1,729,776 + CCNA_01609 0.81 -0.4
1,729,821 - CCNA_01609 0.84 -0.4
1,729,832 + CCNA_01609 0.84 +0.2
1,729,840 - CCNA_01609 0.85 -0.3
1,729,867 + CCNA_01609 0.86 -0.6
1,729,867 + CCNA_01609 0.86 -0.9
1,729,875 - CCNA_01609 0.86 -1.7
1,729,875 - CCNA_01609 0.86 -0.4
1,729,898 + CCNA_01609 0.87 -1.3
1,729,918 + CCNA_01609 0.88 -0.3
1,729,957 - -0.6
1,729,995 - -1.2
1,730,020 + +0.9
1,730,046 + +1.1
1,730,060 - -0.4
1,730,066 + -1.7
1,730,079 - -1.8
1,730,079 - -0.0
1,730,079 - -0.3
1,730,101 - -0.3
1,730,102 - -0.1
1,730,108 + +0.4
1,730,183 + +0.1
1,730,307 + +0.6
1,730,357 + -0.6
1,730,440 - -1.4
1,730,468 + +0.3
1,730,583 - CCNA_01610 0.13 +0.8
1,730,593 - CCNA_01610 0.13 +0.2
1,730,595 + CCNA_01610 0.13 -0.6
1,730,788 + CCNA_01610 0.26 +0.8
1,730,799 + CCNA_01610 0.26 +0.3
1,730,799 + CCNA_01610 0.26 +0.2
1,730,799 + CCNA_01610 0.26 +0.6
1,730,807 - CCNA_01610 0.27 -0.9
1,730,807 - CCNA_01610 0.27 +0.6
1,730,807 - CCNA_01610 0.27 -0.2
1,730,834 + CCNA_01610 0.29 +0.1
1,730,862 + CCNA_01610 0.30 +0.6
1,730,870 - CCNA_01610 0.31 +0.9
1,730,917 + CCNA_01610 0.34 -0.5
1,730,925 - CCNA_01610 0.34 -1.0
1,730,948 + CCNA_01610 0.36 -0.3
1,731,014 + CCNA_01610 0.40 +0.8
1,731,037 - CCNA_01610 0.41 -0.5
1,731,044 - CCNA_01610 0.42 -1.8
1,731,049 - CCNA_01610 0.42 -1.6
1,731,105 + CCNA_01610 0.46 -0.3

Or see this region's nucleotide sequence