Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01415

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01414 and CCNA_01415 are separated by 58 nucleotidesCCNA_01415 and CCNA_01416 are separated by 71 nucleotides CCNA_01414: CCNA_01414 - 3-hydroxyisobutyryl-CoA hydrolase, at 1,531,736 to 1,532,788 _01414 CCNA_01415: CCNA_01415 - methyltransferase, at 1,532,847 to 1,533,644 _01415 CCNA_01416: CCNA_01416 - 3-hydroxyisobutyrate dehydrogenase, at 1,533,716 to 1,534,612 _01416 Position (kb) 1532 1533 1534Strain fitness (log2 ratio) -2 -1 0 1 2at 1531.856 kb on + strand, within CCNA_01414at 1531.856 kb on + strand, within CCNA_01414at 1531.864 kb on - strand, within CCNA_01414at 1531.864 kb on - strand, within CCNA_01414at 1531.864 kb on - strand, within CCNA_01414at 1531.864 kb on - strand, within CCNA_01414at 1531.864 kb on - strand, within CCNA_01414at 1531.866 kb on - strand, within CCNA_01414at 1531.874 kb on - strand, within CCNA_01414at 1531.882 kb on + strand, within CCNA_01414at 1531.890 kb on - strand, within CCNA_01414at 1531.890 kb on - strand, within CCNA_01414at 1531.890 kb on - strand, within CCNA_01414at 1531.900 kb on - strand, within CCNA_01414at 1531.900 kb on - strand, within CCNA_01414at 1531.974 kb on + strand, within CCNA_01414at 1531.982 kb on - strand, within CCNA_01414at 1531.982 kb on - strand, within CCNA_01414at 1531.993 kb on + strand, within CCNA_01414at 1532.032 kb on - strand, within CCNA_01414at 1532.059 kb on + strand, within CCNA_01414at 1532.069 kb on + strand, within CCNA_01414at 1532.092 kb on - strand, within CCNA_01414at 1532.118 kb on + strand, within CCNA_01414at 1532.172 kb on - strand, within CCNA_01414at 1532.181 kb on - strand, within CCNA_01414at 1532.211 kb on + strand, within CCNA_01414at 1532.245 kb on + strand, within CCNA_01414at 1532.245 kb on + strand, within CCNA_01414at 1532.245 kb on + strand, within CCNA_01414at 1532.245 kb on + strand, within CCNA_01414at 1532.245 kb on + strand, within CCNA_01414at 1532.245 kb on + strand, within CCNA_01414at 1532.253 kb on - strand, within CCNA_01414at 1532.266 kb on + strand, within CCNA_01414at 1532.320 kb on - strand, within CCNA_01414at 1532.371 kb on - strand, within CCNA_01414at 1532.396 kb on + strand, within CCNA_01414at 1532.404 kb on - strand, within CCNA_01414at 1532.475 kb on + strand, within CCNA_01414at 1532.483 kb on + strand, within CCNA_01414at 1532.499 kb on + strand, within CCNA_01414at 1532.552 kb on - strand, within CCNA_01414at 1532.554 kb on + strand, within CCNA_01414at 1532.596 kb on + strand, within CCNA_01414at 1532.618 kb on - strand, within CCNA_01414at 1532.652 kb on - strand, within CCNA_01414at 1532.707 kb on + strandat 1532.707 kb on + strandat 1532.707 kb on + strandat 1532.707 kb on + strandat 1532.770 kb on - strandat 1532.795 kb on + strandat 1532.799 kb on + strandat 1532.839 kb on + strandat 1532.847 kb on - strandat 1532.872 kb on + strandat 1532.885 kb on - strandat 1532.885 kb on - strandat 1532.971 kb on - strand, within CCNA_01415at 1533.029 kb on + strand, within CCNA_01415at 1533.062 kb on + strand, within CCNA_01415at 1533.104 kb on + strand, within CCNA_01415at 1533.125 kb on + strand, within CCNA_01415at 1533.135 kb on + strand, within CCNA_01415at 1533.146 kb on + strand, within CCNA_01415at 1533.147 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.152 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.153 kb on + strand, within CCNA_01415at 1533.160 kb on - strand, within CCNA_01415at 1533.160 kb on - strand, within CCNA_01415at 1533.161 kb on - strand, within CCNA_01415at 1533.161 kb on - strand, within CCNA_01415at 1533.161 kb on - strand, within CCNA_01415at 1533.194 kb on + strand, within CCNA_01415at 1533.235 kb on + strand, within CCNA_01415at 1533.289 kb on + strand, within CCNA_01415at 1533.296 kb on - strand, within CCNA_01415at 1533.332 kb on + strand, within CCNA_01415at 1533.349 kb on + strand, within CCNA_01415at 1533.363 kb on + strand, within CCNA_01415at 1533.446 kb on - strand, within CCNA_01415at 1533.454 kb on + strand, within CCNA_01415at 1533.465 kb on - strand, within CCNA_01415at 1533.475 kb on - strand, within CCNA_01415at 1533.478 kb on + strand, within CCNA_01415at 1533.478 kb on + strand, within CCNA_01415at 1533.488 kb on + strand, within CCNA_01415at 1533.488 kb on + strand, within CCNA_01415at 1533.488 kb on + strand, within CCNA_01415at 1533.488 kb on + strand, within CCNA_01415at 1533.494 kb on + strand, within CCNA_01415at 1533.496 kb on - strand, within CCNA_01415at 1533.496 kb on - strand, within CCNA_01415at 1533.501 kb on - strand, within CCNA_01415at 1533.575 kb on + strandat 1533.748 kb on + strandat 1533.775 kb on + strandat 1533.775 kb on + strandat 1533.796 kb on - strandat 1533.827 kb on - strand, within CCNA_01416at 1533.832 kb on - strand, within CCNA_01416at 1533.846 kb on + strand, within CCNA_01416at 1533.895 kb on + strand, within CCNA_01416at 1533.912 kb on + strand, within CCNA_01416at 1533.920 kb on - strand, within CCNA_01416at 1533.942 kb on - strand, within CCNA_01416at 1533.942 kb on - strand, within CCNA_01416at 1533.944 kb on + strand, within CCNA_01416at 1533.952 kb on - strand, within CCNA_01416at 1533.952 kb on - strand, within CCNA_01416at 1534.014 kb on + strand, within CCNA_01416at 1534.019 kb on + strand, within CCNA_01416at 1534.023 kb on + strand, within CCNA_01416at 1534.096 kb on + strand, within CCNA_01416at 1534.096 kb on + strand, within CCNA_01416at 1534.104 kb on + strand, within CCNA_01416at 1534.111 kb on - strand, within CCNA_01416at 1534.111 kb on - strand, within CCNA_01416at 1534.130 kb on - strand, within CCNA_01416at 1534.158 kb on + strand, within CCNA_01416at 1534.217 kb on + strand, within CCNA_01416at 1534.271 kb on + strand, within CCNA_01416at 1534.271 kb on - strand, within CCNA_01416at 1534.279 kb on - strand, within CCNA_01416at 1534.280 kb on - strand, within CCNA_01416at 1534.340 kb on + strand, within CCNA_01416at 1534.340 kb on + strand, within CCNA_01416at 1534.340 kb on + strand, within CCNA_01416at 1534.340 kb on + strand, within CCNA_01416at 1534.340 kb on + strand, within CCNA_01416at 1534.345 kb on + strand, within CCNA_01416at 1534.345 kb on + strand, within CCNA_01416at 1534.348 kb on - strand, within CCNA_01416at 1534.348 kb on - strand, within CCNA_01416at 1534.348 kb on - strand, within CCNA_01416at 1534.348 kb on - strand, within CCNA_01416at 1534.348 kb on - strand, within CCNA_01416at 1534.353 kb on - strand, within CCNA_01416at 1534.353 kb on - strand, within CCNA_01416at 1534.363 kb on + strand, within CCNA_01416at 1534.447 kb on - strand, within CCNA_01416at 1534.449 kb on + strand, within CCNA_01416at 1534.474 kb on + strand, within CCNA_01416at 1534.531 kb on + strandat 1534.531 kb on + strandat 1534.539 kb on - strandat 1534.587 kb on + strandat 1534.587 kb on + strandat 1534.595 kb on - strandat 1534.601 kb on - strandat 1534.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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1,531,856 + CCNA_01414 0.11 +0.3
1,531,856 + CCNA_01414 0.11 -1.6
1,531,864 - CCNA_01414 0.12 -0.1
1,531,864 - CCNA_01414 0.12 -0.4
1,531,864 - CCNA_01414 0.12 +0.5
1,531,864 - CCNA_01414 0.12 -1.2
1,531,864 - CCNA_01414 0.12 -0.3
1,531,866 - CCNA_01414 0.12 -1.0
1,531,874 - CCNA_01414 0.13 -2.3
1,531,882 + CCNA_01414 0.14 +0.2
1,531,890 - CCNA_01414 0.15 -0.3
1,531,890 - CCNA_01414 0.15 -1.5
1,531,890 - CCNA_01414 0.15 -0.7
1,531,900 - CCNA_01414 0.16 -0.4
1,531,900 - CCNA_01414 0.16 -1.6
1,531,974 + CCNA_01414 0.23 +1.0
1,531,982 - CCNA_01414 0.23 -0.4
1,531,982 - CCNA_01414 0.23 -1.0
1,531,993 + CCNA_01414 0.24 -0.1
1,532,032 - CCNA_01414 0.28 -0.6
1,532,059 + CCNA_01414 0.31 +0.9
1,532,069 + CCNA_01414 0.32 -0.4
1,532,092 - CCNA_01414 0.34 +0.5
1,532,118 + CCNA_01414 0.36 +0.2
1,532,172 - CCNA_01414 0.41 -2.2
1,532,181 - CCNA_01414 0.42 +0.3
1,532,211 + CCNA_01414 0.45 +0.2
1,532,245 + CCNA_01414 0.48 +0.4
1,532,245 + CCNA_01414 0.48 -0.9
1,532,245 + CCNA_01414 0.48 +2.7
1,532,245 + CCNA_01414 0.48 +0.7
1,532,245 + CCNA_01414 0.48 +0.3
1,532,245 + CCNA_01414 0.48 +0.6
1,532,253 - CCNA_01414 0.49 -0.7
1,532,266 + CCNA_01414 0.50 +0.6
1,532,320 - CCNA_01414 0.55 +1.5
1,532,371 - CCNA_01414 0.60 -0.6
1,532,396 + CCNA_01414 0.63 +0.5
1,532,404 - CCNA_01414 0.63 -1.1
1,532,475 + CCNA_01414 0.70 +0.9
1,532,483 + CCNA_01414 0.71 +0.2
1,532,499 + CCNA_01414 0.72 +0.4
1,532,552 - CCNA_01414 0.77 -0.1
1,532,554 + CCNA_01414 0.78 +0.2
1,532,596 + CCNA_01414 0.82 +0.0
1,532,618 - CCNA_01414 0.84 -1.5
1,532,652 - CCNA_01414 0.87 +0.5
1,532,707 + -0.2
1,532,707 + +0.2
1,532,707 + -0.3
1,532,707 + +0.6
1,532,770 - -0.5
1,532,795 + +1.1
1,532,799 + -0.2
1,532,839 + +0.5
1,532,847 - +0.1
1,532,872 + +0.3
1,532,885 - -0.2
1,532,885 - -0.8
1,532,971 - CCNA_01415 0.16 -0.0
1,533,029 + CCNA_01415 0.23 -0.0
1,533,062 + CCNA_01415 0.27 -0.3
1,533,104 + CCNA_01415 0.32 +0.1
1,533,125 + CCNA_01415 0.35 +1.0
1,533,135 + CCNA_01415 0.36 +0.7
1,533,146 + CCNA_01415 0.37 -1.3
1,533,147 + CCNA_01415 0.38 +0.3
1,533,152 + CCNA_01415 0.38 +0.4
1,533,152 + CCNA_01415 0.38 +0.3
1,533,152 + CCNA_01415 0.38 -0.3
1,533,152 + CCNA_01415 0.38 +0.2
1,533,152 + CCNA_01415 0.38 +0.7
1,533,152 + CCNA_01415 0.38 +1.3
1,533,152 + CCNA_01415 0.38 +1.0
1,533,152 + CCNA_01415 0.38 +1.4
1,533,152 + CCNA_01415 0.38 -0.8
1,533,152 + CCNA_01415 0.38 -0.3
1,533,152 + CCNA_01415 0.38 +1.5
1,533,152 + CCNA_01415 0.38 +0.3
1,533,153 + CCNA_01415 0.38 +0.2
1,533,153 + CCNA_01415 0.38 +0.4
1,533,153 + CCNA_01415 0.38 +1.4
1,533,153 + CCNA_01415 0.38 -0.7
1,533,153 + CCNA_01415 0.38 -0.6
1,533,153 + CCNA_01415 0.38 +0.6
1,533,153 + CCNA_01415 0.38 -0.2
1,533,153 + CCNA_01415 0.38 -0.4
1,533,153 + CCNA_01415 0.38 +0.6
1,533,153 + CCNA_01415 0.38 +2.4
1,533,153 + CCNA_01415 0.38 +1.4
1,533,160 - CCNA_01415 0.39 -2.2
1,533,160 - CCNA_01415 0.39 +1.1
1,533,161 - CCNA_01415 0.39 +0.6
1,533,161 - CCNA_01415 0.39 +1.4
1,533,161 - CCNA_01415 0.39 +2.1
1,533,194 + CCNA_01415 0.43 -1.0
1,533,235 + CCNA_01415 0.49 +0.3
1,533,289 + CCNA_01415 0.55 +0.7
1,533,296 - CCNA_01415 0.56 -0.5
1,533,332 + CCNA_01415 0.61 -0.4
1,533,349 + CCNA_01415 0.63 -0.7
1,533,363 + CCNA_01415 0.65 -0.8
1,533,446 - CCNA_01415 0.75 -1.0
1,533,454 + CCNA_01415 0.76 +0.3
1,533,465 - CCNA_01415 0.77 -0.3
1,533,475 - CCNA_01415 0.79 -0.0
1,533,478 + CCNA_01415 0.79 +0.4
1,533,478 + CCNA_01415 0.79 +0.9
1,533,488 + CCNA_01415 0.80 -0.0
1,533,488 + CCNA_01415 0.80 +0.3
1,533,488 + CCNA_01415 0.80 -0.2
1,533,488 + CCNA_01415 0.80 +0.3
1,533,494 + CCNA_01415 0.81 +0.2
1,533,496 - CCNA_01415 0.81 -2.2
1,533,496 - CCNA_01415 0.81 -0.8
1,533,501 - CCNA_01415 0.82 -2.2
1,533,575 + -0.1
1,533,748 + +0.6
1,533,775 + +1.0
1,533,775 + +0.3
1,533,796 - -0.3
1,533,827 - CCNA_01416 0.12 +0.6
1,533,832 - CCNA_01416 0.13 +0.1
1,533,846 + CCNA_01416 0.14 -0.5
1,533,895 + CCNA_01416 0.20 +0.3
1,533,912 + CCNA_01416 0.22 +0.4
1,533,920 - CCNA_01416 0.23 -0.5
1,533,942 - CCNA_01416 0.25 -0.2
1,533,942 - CCNA_01416 0.25 -0.1
1,533,944 + CCNA_01416 0.25 -0.9
1,533,952 - CCNA_01416 0.26 +0.3
1,533,952 - CCNA_01416 0.26 -1.6
1,534,014 + CCNA_01416 0.33 +0.3
1,534,019 + CCNA_01416 0.34 +0.5
1,534,023 + CCNA_01416 0.34 -0.5
1,534,096 + CCNA_01416 0.42 +0.7
1,534,096 + CCNA_01416 0.42 +0.4
1,534,104 + CCNA_01416 0.43 +0.9
1,534,111 - CCNA_01416 0.44 -1.2
1,534,111 - CCNA_01416 0.44 -0.0
1,534,130 - CCNA_01416 0.46 -1.1
1,534,158 + CCNA_01416 0.49 +0.9
1,534,217 + CCNA_01416 0.56 +0.8
1,534,271 + CCNA_01416 0.62 -0.2
1,534,271 - CCNA_01416 0.62 -1.1
1,534,279 - CCNA_01416 0.63 -1.1
1,534,280 - CCNA_01416 0.63 +0.9
1,534,340 + CCNA_01416 0.70 -0.3
1,534,340 + CCNA_01416 0.70 +0.2
1,534,340 + CCNA_01416 0.70 -0.6
1,534,340 + CCNA_01416 0.70 +1.1
1,534,340 + CCNA_01416 0.70 +1.1
1,534,345 + CCNA_01416 0.70 +0.9
1,534,345 + CCNA_01416 0.70 -0.1
1,534,348 - CCNA_01416 0.70 +0.4
1,534,348 - CCNA_01416 0.70 -0.3
1,534,348 - CCNA_01416 0.70 -1.3
1,534,348 - CCNA_01416 0.70 +0.7
1,534,348 - CCNA_01416 0.70 +0.2
1,534,353 - CCNA_01416 0.71 -0.1
1,534,353 - CCNA_01416 0.71 -0.8
1,534,363 + CCNA_01416 0.72 +0.6
1,534,447 - CCNA_01416 0.81 +0.6
1,534,449 + CCNA_01416 0.82 +0.8
1,534,474 + CCNA_01416 0.85 -0.1
1,534,531 + +1.7
1,534,531 + -0.1
1,534,539 - -1.0
1,534,587 + +0.5
1,534,587 + +0.0
1,534,595 - -1.9
1,534,601 - -2.6
1,534,606 + +0.2

Or see this region's nucleotide sequence