Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01403

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01399 and CCNA_01400 are separated by 26 nucleotidesCCNA_01400 and CCNA_01403 are separated by 480 nucleotidesCCNA_01403 and CCNA_01404 are separated by 6 nucleotides CCNA_01399: CCNA_01399 - ammonium transporter/methylammonium transporter, at 1,518,556 to 1,520,088 _01399 CCNA_01400: CCNA_01400 - nitrogen regulatory protein GlnK, at 1,520,115 to 1,520,453 _01400 CCNA_01403: CCNA_01403 - glycyl-tRNA synthetase alpha chain, at 1,520,934 to 1,521,833 _01403 CCNA_01404: CCNA_01404 - glycyl-tRNA synthetase beta chain, at 1,521,840 to 1,523,918 _01404 Position (kb) 1520 1521 1522Strain fitness (log2 ratio) -1 0 1at 1520.034 kb on + strandat 1520.112 kb on + strandat 1520.120 kb on - strandat 1520.228 kb on - strand, within CCNA_01400at 1520.253 kb on + strand, within CCNA_01400at 1520.344 kb on + strand, within CCNA_01400at 1520.425 kb on + strandat 1520.425 kb on - strandat 1520.445 kb on - strandat 1520.461 kb on + strandat 1520.482 kb on + strandat 1520.482 kb on + strandat 1520.490 kb on - strandat 1520.554 kb on - strandat 1520.735 kb on + strandat 1520.743 kb on - strandat 1520.794 kb on + strandat 1520.919 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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1,520,034 + -0.0
1,520,112 + +0.8
1,520,120 - -0.1
1,520,228 - CCNA_01400 0.33 +0.1
1,520,253 + CCNA_01400 0.41 -0.2
1,520,344 + CCNA_01400 0.68 -0.0
1,520,425 + +0.4
1,520,425 - +0.5
1,520,445 - -0.0
1,520,461 + +0.4
1,520,482 + +1.0
1,520,482 + +0.4
1,520,490 - -0.0
1,520,554 - -0.8
1,520,735 + -0.6
1,520,743 - -0.3
1,520,794 + +0.3
1,520,919 + +1.1

Or see this region's nucleotide sequence