Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00818

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00817 and CCNA_00818 are separated by 160 nucleotidesCCNA_00818 and CCNA_00820 are separated by 55 nucleotides CCNA_00817: CCNA_00817 - L-sorbosone dehydrogenase, at 879,956 to 881,284 _00817 CCNA_00818: CCNA_00818 - glutathione S-transferase, at 881,445 to 882,167 _00818 CCNA_00820: CCNA_00820 - 3-ketoacyl-CoA thiolase, at 882,223 to 883,395 _00820 Position (kb) 881 882 883Strain fitness (log2 ratio) -2 -1 0 1 2 3at 880.452 kb on + strand, within CCNA_00817at 880.452 kb on + strand, within CCNA_00817at 880.452 kb on + strand, within CCNA_00817at 880.452 kb on + strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.484 kb on - strand, within CCNA_00817at 880.484 kb on - strand, within CCNA_00817at 880.494 kb on + strand, within CCNA_00817at 880.494 kb on + strand, within CCNA_00817at 880.499 kb on + strand, within CCNA_00817at 880.502 kb on - strand, within CCNA_00817at 880.553 kb on - strand, within CCNA_00817at 880.565 kb on + strand, within CCNA_00817at 880.612 kb on - strand, within CCNA_00817at 880.620 kb on + strand, within CCNA_00817at 880.620 kb on + strand, within CCNA_00817at 880.620 kb on + strand, within CCNA_00817at 880.628 kb on - strand, within CCNA_00817at 880.635 kb on - strand, within CCNA_00817at 880.635 kb on - strand, within CCNA_00817at 880.670 kb on - strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.748 kb on - strand, within CCNA_00817at 880.748 kb on - strand, within CCNA_00817at 880.785 kb on + strand, within CCNA_00817at 880.785 kb on - strand, within CCNA_00817at 880.793 kb on + strand, within CCNA_00817at 880.793 kb on + strand, within CCNA_00817at 880.798 kb on + strand, within CCNA_00817at 880.801 kb on - strand, within CCNA_00817at 880.806 kb on - strand, within CCNA_00817at 880.825 kb on - strand, within CCNA_00817at 880.831 kb on + strand, within CCNA_00817at 880.847 kb on - strand, within CCNA_00817at 880.847 kb on - strand, within CCNA_00817at 880.847 kb on - strand, within CCNA_00817at 880.886 kb on + strand, within CCNA_00817at 880.909 kb on - strand, within CCNA_00817at 880.938 kb on - strand, within CCNA_00817at 880.950 kb on + strand, within CCNA_00817at 880.956 kb on + strand, within CCNA_00817at 880.957 kb on - strand, within CCNA_00817at 880.962 kb on + strand, within CCNA_00817at 880.964 kb on - strand, within CCNA_00817at 880.970 kb on - strand, within CCNA_00817at 881.010 kb on + strand, within CCNA_00817at 881.016 kb on + strand, within CCNA_00817at 881.033 kb on + strand, within CCNA_00817at 881.068 kb on + strand, within CCNA_00817at 881.068 kb on + strand, within CCNA_00817at 881.068 kb on + strand, within CCNA_00817at 881.068 kb on - strand, within CCNA_00817at 881.068 kb on - strand, within CCNA_00817at 881.076 kb on - strand, within CCNA_00817at 881.111 kb on + strand, within CCNA_00817at 881.146 kb on + strand, within CCNA_00817at 881.154 kb on - strandat 881.166 kb on - strandat 881.173 kb on + strandat 881.173 kb on + strandat 881.173 kb on + strandat 881.206 kb on + strandat 881.272 kb on + strandat 881.272 kb on + strandat 881.272 kb on + strandat 881.280 kb on - strandat 881.280 kb on - strandat 881.306 kb on - strandat 881.310 kb on + strandat 881.332 kb on - strandat 881.336 kb on + strandat 881.336 kb on - strandat 881.357 kb on - strandat 881.386 kb on - strandat 881.392 kb on + strandat 881.392 kb on + strandat 881.400 kb on - strandat 881.452 kb on - strandat 881.576 kb on + strand, within CCNA_00818at 881.587 kb on - strand, within CCNA_00818at 881.587 kb on - strand, within CCNA_00818at 881.589 kb on - strand, within CCNA_00818at 881.589 kb on - strand, within CCNA_00818at 881.640 kb on + strand, within CCNA_00818at 881.640 kb on + strand, within CCNA_00818at 881.640 kb on + strand, within CCNA_00818at 881.648 kb on + strand, within CCNA_00818at 881.648 kb on - strand, within CCNA_00818at 881.649 kb on + strand, within CCNA_00818at 881.649 kb on + strand, within CCNA_00818at 881.672 kb on + strand, within CCNA_00818at 881.725 kb on + strand, within CCNA_00818at 881.743 kb on + strand, within CCNA_00818at 881.747 kb on + strand, within CCNA_00818at 881.747 kb on + strand, within CCNA_00818at 881.747 kb on + strand, within CCNA_00818at 881.755 kb on - strand, within CCNA_00818at 881.766 kb on + strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.774 kb on - strand, within CCNA_00818at 881.817 kb on - strand, within CCNA_00818at 881.821 kb on - strand, within CCNA_00818at 881.822 kb on + strand, within CCNA_00818at 881.822 kb on + strand, within CCNA_00818at 881.822 kb on + strand, within CCNA_00818at 881.830 kb on - strand, within CCNA_00818at 881.830 kb on - strand, within CCNA_00818at 881.886 kb on + strand, within CCNA_00818at 881.936 kb on + strand, within CCNA_00818at 881.982 kb on + strand, within CCNA_00818at 881.983 kb on - strand, within CCNA_00818at 881.990 kb on - strand, within CCNA_00818at 881.998 kb on + strand, within CCNA_00818at 881.998 kb on - strand, within CCNA_00818at 881.998 kb on - strand, within CCNA_00818at 882.016 kb on - strand, within CCNA_00818at 882.016 kb on - strand, within CCNA_00818at 882.017 kb on - strand, within CCNA_00818at 882.050 kb on + strand, within CCNA_00818at 882.050 kb on - strand, within CCNA_00818at 882.058 kb on - strand, within CCNA_00818at 882.062 kb on + strand, within CCNA_00818at 882.062 kb on + strand, within CCNA_00818at 882.068 kb on + strand, within CCNA_00818at 882.095 kb on + strandat 882.136 kb on + strandat 882.136 kb on + strandat 882.136 kb on + strandat 882.137 kb on - strandat 882.167 kb on + strandat 882.170 kb on - strandat 882.175 kb on - strandat 882.188 kb on + strandat 882.216 kb on + strandat 882.229 kb on - strandat 882.229 kb on - strandat 882.229 kb on - strandat 882.250 kb on + strandat 882.303 kb on + strandat 882.311 kb on - strandat 882.311 kb on - strandat 882.311 kb on - strandat 882.319 kb on - strandat 882.319 kb on - strandat 882.323 kb on + strandat 882.331 kb on - strandat 882.333 kb on + strandat 882.339 kb on + strandat 882.349 kb on + strand, within CCNA_00820at 882.360 kb on + strand, within CCNA_00820at 882.386 kb on + strand, within CCNA_00820at 882.417 kb on + strand, within CCNA_00820at 882.443 kb on + strand, within CCNA_00820at 882.459 kb on - strand, within CCNA_00820at 882.499 kb on + strand, within CCNA_00820at 882.499 kb on + strand, within CCNA_00820at 882.515 kb on - strand, within CCNA_00820at 882.531 kb on - strand, within CCNA_00820at 882.557 kb on - strand, within CCNA_00820at 882.591 kb on - strand, within CCNA_00820at 882.598 kb on + strand, within CCNA_00820at 882.607 kb on + strand, within CCNA_00820at 882.615 kb on - strand, within CCNA_00820at 882.623 kb on + strand, within CCNA_00820at 882.687 kb on + strand, within CCNA_00820at 882.789 kb on - strand, within CCNA_00820at 882.794 kb on - strand, within CCNA_00820at 882.859 kb on + strand, within CCNA_00820at 882.867 kb on - strand, within CCNA_00820at 882.867 kb on - strand, within CCNA_00820at 882.872 kb on + strand, within CCNA_00820at 882.872 kb on - strand, within CCNA_00820at 882.874 kb on + strand, within CCNA_00820at 882.895 kb on - strand, within CCNA_00820at 882.933 kb on + strand, within CCNA_00820at 882.941 kb on - strand, within CCNA_00820at 882.945 kb on - strand, within CCNA_00820at 882.960 kb on + strand, within CCNA_00820at 882.963 kb on - strand, within CCNA_00820at 882.963 kb on - strand, within CCNA_00820at 883.003 kb on + strand, within CCNA_00820at 883.003 kb on + strand, within CCNA_00820at 883.008 kb on + strand, within CCNA_00820at 883.010 kb on + strand, within CCNA_00820at 883.018 kb on - strand, within CCNA_00820at 883.018 kb on - strand, within CCNA_00820at 883.051 kb on - strand, within CCNA_00820at 883.064 kb on + strand, within CCNA_00820at 883.097 kb on - strand, within CCNA_00820at 883.132 kb on - strand, within CCNA_00820at 883.160 kb on + strand, within CCNA_00820

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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880,452 + CCNA_00817 0.37 +0.3
880,452 + CCNA_00817 0.37 +0.1
880,452 + CCNA_00817 0.37 -0.2
880,452 + CCNA_00817 0.37 +0.8
880,460 - CCNA_00817 0.38 -0.4
880,460 - CCNA_00817 0.38 +0.5
880,460 - CCNA_00817 0.38 -0.4
880,460 - CCNA_00817 0.38 +0.5
880,484 - CCNA_00817 0.40 -0.0
880,484 - CCNA_00817 0.40 -0.5
880,494 + CCNA_00817 0.40 +0.2
880,494 + CCNA_00817 0.40 +0.7
880,499 + CCNA_00817 0.41 +1.1
880,502 - CCNA_00817 0.41 -0.7
880,553 - CCNA_00817 0.45 +0.6
880,565 + CCNA_00817 0.46 -0.0
880,612 - CCNA_00817 0.49 -1.1
880,620 + CCNA_00817 0.50 -1.0
880,620 + CCNA_00817 0.50 -0.1
880,620 + CCNA_00817 0.50 -1.0
880,628 - CCNA_00817 0.51 +1.0
880,635 - CCNA_00817 0.51 -0.2
880,635 - CCNA_00817 0.51 +1.8
880,670 - CCNA_00817 0.54 -0.1
880,740 + CCNA_00817 0.59 +1.0
880,740 + CCNA_00817 0.59 +0.1
880,740 + CCNA_00817 0.59 +0.0
880,740 + CCNA_00817 0.59 -0.9
880,740 + CCNA_00817 0.59 +0.8
880,740 + CCNA_00817 0.59 +0.5
880,748 - CCNA_00817 0.60 +1.3
880,748 - CCNA_00817 0.60 +0.4
880,785 + CCNA_00817 0.62 -0.8
880,785 - CCNA_00817 0.62 -1.1
880,793 + CCNA_00817 0.63 -1.4
880,793 + CCNA_00817 0.63 +0.0
880,798 + CCNA_00817 0.63 -0.6
880,801 - CCNA_00817 0.64 -0.6
880,806 - CCNA_00817 0.64 -0.2
880,825 - CCNA_00817 0.65 -0.1
880,831 + CCNA_00817 0.66 +0.7
880,847 - CCNA_00817 0.67 -0.1
880,847 - CCNA_00817 0.67 -0.2
880,847 - CCNA_00817 0.67 -0.9
880,886 + CCNA_00817 0.70 +0.1
880,909 - CCNA_00817 0.72 -0.3
880,938 - CCNA_00817 0.74 -0.2
880,950 + CCNA_00817 0.75 -0.1
880,956 + CCNA_00817 0.75 -0.5
880,957 - CCNA_00817 0.75 -0.5
880,962 + CCNA_00817 0.76 -0.5
880,964 - CCNA_00817 0.76 -1.4
880,970 - CCNA_00817 0.76 +0.0
881,010 + CCNA_00817 0.79 -0.8
881,016 + CCNA_00817 0.80 -0.9
881,033 + CCNA_00817 0.81 +1.3
881,068 + CCNA_00817 0.84 -0.3
881,068 + CCNA_00817 0.84 -0.7
881,068 + CCNA_00817 0.84 -0.1
881,068 - CCNA_00817 0.84 -1.7
881,068 - CCNA_00817 0.84 -0.3
881,076 - CCNA_00817 0.84 -0.1
881,111 + CCNA_00817 0.87 -1.4
881,146 + CCNA_00817 0.90 -0.4
881,154 - +0.5
881,166 - -0.3
881,173 + +0.3
881,173 + +0.2
881,173 + -0.9
881,206 + -1.0
881,272 + -0.2
881,272 + -1.3
881,272 + +0.3
881,280 - -0.4
881,280 - -0.3
881,306 - +0.8
881,310 + +0.5
881,332 - +0.4
881,336 + +0.4
881,336 - -0.2
881,357 - +1.0
881,386 - +1.6
881,392 + -0.1
881,392 + -0.9
881,400 - +1.2
881,452 - +2.8
881,576 + CCNA_00818 0.18 -0.8
881,587 - CCNA_00818 0.20 -1.1
881,587 - CCNA_00818 0.20 +2.1
881,589 - CCNA_00818 0.20 +0.1
881,589 - CCNA_00818 0.20 +2.0
881,640 + CCNA_00818 0.27 -0.8
881,640 + CCNA_00818 0.27 +1.4
881,640 + CCNA_00818 0.27 +1.4
881,648 + CCNA_00818 0.28 -0.2
881,648 - CCNA_00818 0.28 -0.0
881,649 + CCNA_00818 0.28 -1.3
881,649 + CCNA_00818 0.28 -1.3
881,672 + CCNA_00818 0.31 +1.1
881,725 + CCNA_00818 0.39 -0.0
881,743 + CCNA_00818 0.41 -1.1
881,747 + CCNA_00818 0.42 +0.7
881,747 + CCNA_00818 0.42 -0.2
881,747 + CCNA_00818 0.42 -0.0
881,755 - CCNA_00818 0.43 -0.5
881,766 + CCNA_00818 0.44 -0.5
881,774 - CCNA_00818 0.46 -0.6
881,774 - CCNA_00818 0.46 -0.3
881,774 - CCNA_00818 0.46 -0.1
881,774 - CCNA_00818 0.46 -0.3
881,774 - CCNA_00818 0.46 +0.2
881,817 - CCNA_00818 0.51 -0.8
881,821 - CCNA_00818 0.52 +1.2
881,822 + CCNA_00818 0.52 -0.7
881,822 + CCNA_00818 0.52 -0.2
881,822 + CCNA_00818 0.52 -0.7
881,830 - CCNA_00818 0.53 -0.8
881,830 - CCNA_00818 0.53 -1.1
881,886 + CCNA_00818 0.61 -0.6
881,936 + CCNA_00818 0.68 -0.0
881,982 + CCNA_00818 0.74 -1.0
881,983 - CCNA_00818 0.74 -1.6
881,990 - CCNA_00818 0.75 -1.1
881,998 + CCNA_00818 0.76 -0.2
881,998 - CCNA_00818 0.76 +2.2
881,998 - CCNA_00818 0.76 -0.8
882,016 - CCNA_00818 0.79 -0.7
882,016 - CCNA_00818 0.79 -0.5
882,017 - CCNA_00818 0.79 -1.7
882,050 + CCNA_00818 0.84 -0.7
882,050 - CCNA_00818 0.84 -1.3
882,058 - CCNA_00818 0.85 +0.2
882,062 + CCNA_00818 0.85 -0.9
882,062 + CCNA_00818 0.85 +1.9
882,068 + CCNA_00818 0.86 -0.4
882,095 + -0.2
882,136 + +0.3
882,136 + +1.0
882,136 + -0.8
882,137 - +0.1
882,167 + -0.6
882,170 - -0.3
882,175 - +0.5
882,188 + -0.8
882,216 + -0.9
882,229 - +1.1
882,229 - +1.1
882,229 - +0.0
882,250 + -1.9
882,303 + -2.0
882,311 - +0.6
882,311 - +0.4
882,311 - -1.1
882,319 - +0.3
882,319 - +0.3
882,323 + +0.4
882,331 - -0.1
882,333 + -1.0
882,339 + +1.1
882,349 + CCNA_00820 0.11 +0.4
882,360 + CCNA_00820 0.12 -0.3
882,386 + CCNA_00820 0.14 -0.1
882,417 + CCNA_00820 0.17 -0.6
882,443 + CCNA_00820 0.19 +0.0
882,459 - CCNA_00820 0.20 +0.0
882,499 + CCNA_00820 0.24 +0.1
882,499 + CCNA_00820 0.24 +0.4
882,515 - CCNA_00820 0.25 +0.1
882,531 - CCNA_00820 0.26 -0.3
882,557 - CCNA_00820 0.28 -0.5
882,591 - CCNA_00820 0.31 +0.2
882,598 + CCNA_00820 0.32 +0.1
882,607 + CCNA_00820 0.33 +0.2
882,615 - CCNA_00820 0.33 -2.3
882,623 + CCNA_00820 0.34 -1.5
882,687 + CCNA_00820 0.40 -0.7
882,789 - CCNA_00820 0.48 +0.1
882,794 - CCNA_00820 0.49 -0.4
882,859 + CCNA_00820 0.54 +0.7
882,867 - CCNA_00820 0.55 +0.4
882,867 - CCNA_00820 0.55 -0.2
882,872 + CCNA_00820 0.55 -1.0
882,872 - CCNA_00820 0.55 -1.3
882,874 + CCNA_00820 0.55 +0.1
882,895 - CCNA_00820 0.57 -0.3
882,933 + CCNA_00820 0.61 -0.0
882,941 - CCNA_00820 0.61 +0.2
882,945 - CCNA_00820 0.62 -0.3
882,960 + CCNA_00820 0.63 +1.1
882,963 - CCNA_00820 0.63 -0.8
882,963 - CCNA_00820 0.63 -0.7
883,003 + CCNA_00820 0.66 +0.1
883,003 + CCNA_00820 0.66 +0.1
883,008 + CCNA_00820 0.67 +1.8
883,010 + CCNA_00820 0.67 -0.1
883,018 - CCNA_00820 0.68 -0.3
883,018 - CCNA_00820 0.68 -0.4
883,051 - CCNA_00820 0.71 -0.4
883,064 + CCNA_00820 0.72 -0.6
883,097 - CCNA_00820 0.75 -0.2
883,132 - CCNA_00820 0.77 -0.7
883,160 + CCNA_00820 0.80 -1.3

Or see this region's nucleotide sequence