Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00794

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00793 and CCNA_00794 are separated by 109 nucleotidesCCNA_00794 and CCNA_00795 are separated by 10 nucleotidesCCNA_00795 and CCNA_00796 overlap by 8 nucleotides CCNA_00793: CCNA_00793 - phosphatidylglycerol glycosyltransferase, at 856,299 to 857,666 _00793 CCNA_00794: CCNA_00794 - conserved membrane spanning protein, at 857,776 to 858,969 _00794 CCNA_00795: CCNA_00795 - two-component response regulator FixJ, at 858,980 to 859,588 _00795 CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068 _00796 Position (kb) 857 858 859Strain fitness (log2 ratio) -2 -1 0 1 2at 856.810 kb on + strand, within CCNA_00793at 856.810 kb on + strand, within CCNA_00793at 856.818 kb on - strand, within CCNA_00793at 856.823 kb on - strand, within CCNA_00793at 856.849 kb on + strand, within CCNA_00793at 856.870 kb on + strand, within CCNA_00793at 856.887 kb on + strand, within CCNA_00793at 856.906 kb on + strand, within CCNA_00793at 856.906 kb on + strand, within CCNA_00793at 856.914 kb on - strand, within CCNA_00793at 856.921 kb on + strand, within CCNA_00793at 856.940 kb on + strand, within CCNA_00793at 856.940 kb on + strand, within CCNA_00793at 856.940 kb on + strand, within CCNA_00793at 856.940 kb on + strand, within CCNA_00793at 856.940 kb on + strand, within CCNA_00793at 856.940 kb on + strand, within CCNA_00793at 856.941 kb on + strand, within CCNA_00793at 856.941 kb on + strand, within CCNA_00793at 856.948 kb on - strand, within CCNA_00793at 856.948 kb on - strand, within CCNA_00793at 856.949 kb on - strand, within CCNA_00793at 856.949 kb on - strand, within CCNA_00793at 856.971 kb on + strand, within CCNA_00793at 856.976 kb on + strand, within CCNA_00793at 856.976 kb on + strand, within CCNA_00793at 856.976 kb on + strand, within CCNA_00793at 856.976 kb on + strand, within CCNA_00793at 856.984 kb on - strand, within CCNA_00793at 856.984 kb on - strand, within CCNA_00793at 856.984 kb on - strand, within CCNA_00793at 856.996 kb on + strand, within CCNA_00793at 857.013 kb on + strand, within CCNA_00793at 857.021 kb on - strand, within CCNA_00793at 857.059 kb on - strand, within CCNA_00793at 857.223 kb on + strand, within CCNA_00793at 857.228 kb on + strand, within CCNA_00793at 857.231 kb on - strand, within CCNA_00793at 857.235 kb on + strand, within CCNA_00793at 857.235 kb on + strand, within CCNA_00793at 857.235 kb on + strand, within CCNA_00793at 857.235 kb on + strand, within CCNA_00793at 857.243 kb on - strand, within CCNA_00793at 857.243 kb on - strand, within CCNA_00793at 857.243 kb on - strand, within CCNA_00793at 857.263 kb on + strand, within CCNA_00793at 857.264 kb on + strand, within CCNA_00793at 857.272 kb on - strand, within CCNA_00793at 857.274 kb on + strand, within CCNA_00793at 857.282 kb on - strand, within CCNA_00793at 857.296 kb on + strand, within CCNA_00793at 857.299 kb on - strand, within CCNA_00793at 857.310 kb on + strand, within CCNA_00793at 857.318 kb on - strand, within CCNA_00793at 857.324 kb on - strand, within CCNA_00793at 857.343 kb on + strand, within CCNA_00793at 857.351 kb on - strand, within CCNA_00793at 857.351 kb on - strand, within CCNA_00793at 857.366 kb on - strand, within CCNA_00793at 857.392 kb on - strand, within CCNA_00793at 857.408 kb on - strand, within CCNA_00793at 857.415 kb on + strand, within CCNA_00793at 857.424 kb on + strand, within CCNA_00793at 857.424 kb on + strand, within CCNA_00793at 857.454 kb on - strand, within CCNA_00793at 857.475 kb on + strand, within CCNA_00793at 857.483 kb on - strand, within CCNA_00793at 857.483 kb on - strand, within CCNA_00793at 857.483 kb on - strand, within CCNA_00793at 857.539 kb on - strandat 857.539 kb on - strandat 857.573 kb on - strandat 857.628 kb on - strandat 857.628 kb on - strandat 857.630 kb on + strandat 857.631 kb on + strandat 857.632 kb on + strandat 857.662 kb on - strandat 857.668 kb on - strandat 857.735 kb on + strandat 857.775 kb on - strandat 857.792 kb on + strandat 857.839 kb on + strandat 857.839 kb on + strandat 857.844 kb on + strandat 857.852 kb on - strandat 857.857 kb on - strandat 857.857 kb on - strandat 857.857 kb on - strandat 857.865 kb on + strandat 857.925 kb on - strand, within CCNA_00794at 857.963 kb on + strand, within CCNA_00794at 857.963 kb on + strand, within CCNA_00794at 857.971 kb on - strand, within CCNA_00794at 857.971 kb on - strand, within CCNA_00794at 857.971 kb on - strand, within CCNA_00794at 857.971 kb on - strand, within CCNA_00794at 857.971 kb on - strand, within CCNA_00794at 857.971 kb on - strand, within CCNA_00794at 857.977 kb on - strand, within CCNA_00794at 857.993 kb on + strand, within CCNA_00794at 858.044 kb on + strand, within CCNA_00794at 858.049 kb on + strand, within CCNA_00794at 858.070 kb on - strand, within CCNA_00794at 858.077 kb on + strand, within CCNA_00794at 858.118 kb on - strand, within CCNA_00794at 858.118 kb on - strand, within CCNA_00794at 858.119 kb on - strand, within CCNA_00794at 858.125 kb on + strand, within CCNA_00794at 858.125 kb on + strand, within CCNA_00794at 858.135 kb on + strand, within CCNA_00794at 858.135 kb on + strand, within CCNA_00794at 858.140 kb on + strand, within CCNA_00794at 858.151 kb on + strand, within CCNA_00794at 858.153 kb on - strand, within CCNA_00794at 858.167 kb on - strand, within CCNA_00794at 858.178 kb on + strand, within CCNA_00794at 858.178 kb on + strand, within CCNA_00794at 858.178 kb on + strand, within CCNA_00794at 858.186 kb on - strand, within CCNA_00794at 858.186 kb on - strand, within CCNA_00794at 858.186 kb on - strand, within CCNA_00794at 858.186 kb on - strand, within CCNA_00794at 858.186 kb on - strand, within CCNA_00794at 858.198 kb on - strand, within CCNA_00794at 858.222 kb on + strand, within CCNA_00794at 858.230 kb on - strand, within CCNA_00794at 858.237 kb on - strand, within CCNA_00794at 858.295 kb on + strand, within CCNA_00794at 858.340 kb on - strand, within CCNA_00794at 858.340 kb on - strand, within CCNA_00794at 858.345 kb on + strand, within CCNA_00794at 858.367 kb on + strand, within CCNA_00794at 858.390 kb on - strand, within CCNA_00794at 858.418 kb on + strand, within CCNA_00794at 858.418 kb on + strand, within CCNA_00794at 858.426 kb on - strand, within CCNA_00794at 858.428 kb on + strand, within CCNA_00794at 858.431 kb on - strand, within CCNA_00794at 858.442 kb on + strand, within CCNA_00794at 858.442 kb on + strand, within CCNA_00794at 858.442 kb on + strand, within CCNA_00794at 858.449 kb on + strand, within CCNA_00794at 858.450 kb on - strand, within CCNA_00794at 858.450 kb on - strand, within CCNA_00794at 858.455 kb on - strand, within CCNA_00794at 858.469 kb on + strand, within CCNA_00794at 858.510 kb on - strand, within CCNA_00794at 858.521 kb on + strand, within CCNA_00794at 858.521 kb on + strand, within CCNA_00794at 858.530 kb on + strand, within CCNA_00794at 858.559 kb on + strand, within CCNA_00794at 858.566 kb on + strand, within CCNA_00794at 858.574 kb on - strand, within CCNA_00794at 858.579 kb on + strand, within CCNA_00794at 858.579 kb on - strand, within CCNA_00794at 858.579 kb on - strand, within CCNA_00794at 858.598 kb on - strand, within CCNA_00794at 858.625 kb on + strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.730 kb on + strand, within CCNA_00794at 858.730 kb on + strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.769 kb on - strand, within CCNA_00794at 858.791 kb on + strand, within CCNA_00794at 858.791 kb on + strand, within CCNA_00794at 858.799 kb on - strand, within CCNA_00794at 858.806 kb on - strand, within CCNA_00794at 858.856 kb on - strandat 858.918 kb on + strandat 858.938 kb on - strandat 859.000 kb on + strandat 859.010 kb on + strandat 859.017 kb on + strandat 859.032 kb on + strandat 859.064 kb on + strand, within CCNA_00795at 859.064 kb on + strand, within CCNA_00795at 859.083 kb on - strand, within CCNA_00795at 859.093 kb on + strand, within CCNA_00795at 859.133 kb on - strand, within CCNA_00795at 859.163 kb on - strand, within CCNA_00795at 859.261 kb on + strand, within CCNA_00795at 859.343 kb on + strand, within CCNA_00795at 859.389 kb on + strand, within CCNA_00795at 859.402 kb on - strand, within CCNA_00795at 859.406 kb on + strand, within CCNA_00795at 859.414 kb on - strand, within CCNA_00795at 859.443 kb on + strand, within CCNA_00795at 859.443 kb on + strand, within CCNA_00795at 859.451 kb on - strand, within CCNA_00795at 859.453 kb on + strand, within CCNA_00795at 859.463 kb on + strand, within CCNA_00795at 859.471 kb on - strand, within CCNA_00795at 859.492 kb on - strand, within CCNA_00795at 859.498 kb on + strand, within CCNA_00795at 859.514 kb on + strand, within CCNA_00795at 859.543 kb on - strandat 859.570 kb on + strandat 859.576 kb on - strandat 859.585 kb on - strandat 859.625 kb on + strandat 859.636 kb on + strandat 859.644 kb on - strandat 859.667 kb on + strandat 859.668 kb on - strandat 859.672 kb on + strandat 859.672 kb on + strandat 859.680 kb on - strandat 859.680 kb on - strandat 859.680 kb on - strandat 859.680 kb on - strandat 859.727 kb on + strandat 859.727 kb on + strandat 859.729 kb on + strandat 859.735 kb on - strand, within CCNA_00796at 859.737 kb on - strand, within CCNA_00796at 859.737 kb on - strand, within CCNA_00796at 859.781 kb on - strand, within CCNA_00796at 859.828 kb on - strand, within CCNA_00796at 859.854 kb on + strand, within CCNA_00796at 859.854 kb on + strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.885 kb on - strand, within CCNA_00796at 859.885 kb on - strand, within CCNA_00796at 859.889 kb on + strand, within CCNA_00796at 859.935 kb on + strand, within CCNA_00796

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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856,810 + CCNA_00793 0.37 +0.0
856,810 + CCNA_00793 0.37 +0.3
856,818 - CCNA_00793 0.38 -1.4
856,823 - CCNA_00793 0.38 -0.1
856,849 + CCNA_00793 0.40 +0.7
856,870 + CCNA_00793 0.42 +0.5
856,887 + CCNA_00793 0.43 -0.2
856,906 + CCNA_00793 0.44 +0.8
856,906 + CCNA_00793 0.44 -0.5
856,914 - CCNA_00793 0.45 -1.0
856,921 + CCNA_00793 0.45 -0.6
856,940 + CCNA_00793 0.47 -0.2
856,940 + CCNA_00793 0.47 +1.0
856,940 + CCNA_00793 0.47 -0.3
856,940 + CCNA_00793 0.47 -0.9
856,940 + CCNA_00793 0.47 +0.0
856,940 + CCNA_00793 0.47 +1.1
856,941 + CCNA_00793 0.47 -0.1
856,941 + CCNA_00793 0.47 -1.5
856,948 - CCNA_00793 0.47 -0.3
856,948 - CCNA_00793 0.47 -0.2
856,949 - CCNA_00793 0.48 -0.5
856,949 - CCNA_00793 0.48 -1.0
856,971 + CCNA_00793 0.49 +0.2
856,976 + CCNA_00793 0.49 -0.1
856,976 + CCNA_00793 0.49 +0.6
856,976 + CCNA_00793 0.49 -0.0
856,976 + CCNA_00793 0.49 -0.4
856,984 - CCNA_00793 0.50 -1.2
856,984 - CCNA_00793 0.50 -2.0
856,984 - CCNA_00793 0.50 +1.1
856,996 + CCNA_00793 0.51 -0.7
857,013 + CCNA_00793 0.52 -0.9
857,021 - CCNA_00793 0.53 -1.1
857,059 - CCNA_00793 0.56 -0.8
857,223 + CCNA_00793 0.68 +0.1
857,228 + CCNA_00793 0.68 +0.5
857,231 - CCNA_00793 0.68 +0.2
857,235 + CCNA_00793 0.68 +0.3
857,235 + CCNA_00793 0.68 +0.9
857,235 + CCNA_00793 0.68 -0.8
857,235 + CCNA_00793 0.68 -0.6
857,243 - CCNA_00793 0.69 +0.8
857,243 - CCNA_00793 0.69 -0.3
857,243 - CCNA_00793 0.69 -0.0
857,263 + CCNA_00793 0.70 +1.0
857,264 + CCNA_00793 0.71 -0.7
857,272 - CCNA_00793 0.71 +1.1
857,274 + CCNA_00793 0.71 -0.2
857,282 - CCNA_00793 0.72 -0.7
857,296 + CCNA_00793 0.73 -0.0
857,299 - CCNA_00793 0.73 -0.3
857,310 + CCNA_00793 0.74 -0.8
857,318 - CCNA_00793 0.74 -0.2
857,324 - CCNA_00793 0.75 -0.4
857,343 + CCNA_00793 0.76 -1.2
857,351 - CCNA_00793 0.77 -0.5
857,351 - CCNA_00793 0.77 -0.8
857,366 - CCNA_00793 0.78 -0.3
857,392 - CCNA_00793 0.80 -0.2
857,408 - CCNA_00793 0.81 -0.4
857,415 + CCNA_00793 0.82 +0.8
857,424 + CCNA_00793 0.82 -0.2
857,424 + CCNA_00793 0.82 +0.1
857,454 - CCNA_00793 0.84 +0.4
857,475 + CCNA_00793 0.86 +0.4
857,483 - CCNA_00793 0.87 +0.8
857,483 - CCNA_00793 0.87 -0.6
857,483 - CCNA_00793 0.87 +0.4
857,539 - -0.5
857,539 - -1.1
857,573 - -0.2
857,628 - -0.5
857,628 - +0.8
857,630 + +0.7
857,631 + +0.2
857,632 + -0.0
857,662 - -0.5
857,668 - +0.3
857,735 + -0.9
857,775 - +1.0
857,792 + -0.0
857,839 + -1.0
857,839 + +0.1
857,844 + -0.6
857,852 - -2.1
857,857 - -0.7
857,857 - +1.5
857,857 - -2.5
857,865 + +0.8
857,925 - CCNA_00794 0.12 +0.3
857,963 + CCNA_00794 0.16 -1.2
857,963 + CCNA_00794 0.16 -0.4
857,971 - CCNA_00794 0.16 -0.2
857,971 - CCNA_00794 0.16 -0.2
857,971 - CCNA_00794 0.16 +0.4
857,971 - CCNA_00794 0.16 +0.9
857,971 - CCNA_00794 0.16 +0.2
857,971 - CCNA_00794 0.16 -0.8
857,977 - CCNA_00794 0.17 +0.2
857,993 + CCNA_00794 0.18 -0.7
858,044 + CCNA_00794 0.22 -0.2
858,049 + CCNA_00794 0.23 -0.2
858,070 - CCNA_00794 0.25 -0.4
858,077 + CCNA_00794 0.25 +0.4
858,118 - CCNA_00794 0.29 -1.4
858,118 - CCNA_00794 0.29 -0.4
858,119 - CCNA_00794 0.29 +0.6
858,125 + CCNA_00794 0.29 +0.1
858,125 + CCNA_00794 0.29 +0.8
858,135 + CCNA_00794 0.30 -0.5
858,135 + CCNA_00794 0.30 +0.6
858,140 + CCNA_00794 0.30 +0.3
858,151 + CCNA_00794 0.31 -0.4
858,153 - CCNA_00794 0.32 -0.8
858,167 - CCNA_00794 0.33 -0.5
858,178 + CCNA_00794 0.34 -0.2
858,178 + CCNA_00794 0.34 -0.9
858,178 + CCNA_00794 0.34 -0.2
858,186 - CCNA_00794 0.34 -0.3
858,186 - CCNA_00794 0.34 -0.1
858,186 - CCNA_00794 0.34 -1.3
858,186 - CCNA_00794 0.34 +0.8
858,186 - CCNA_00794 0.34 -1.1
858,198 - CCNA_00794 0.35 +0.1
858,222 + CCNA_00794 0.37 -0.6
858,230 - CCNA_00794 0.38 -1.0
858,237 - CCNA_00794 0.39 +0.3
858,295 + CCNA_00794 0.43 -2.1
858,340 - CCNA_00794 0.47 -1.3
858,340 - CCNA_00794 0.47 +0.2
858,345 + CCNA_00794 0.48 +0.9
858,367 + CCNA_00794 0.49 +1.2
858,390 - CCNA_00794 0.51 +0.4
858,418 + CCNA_00794 0.54 -1.8
858,418 + CCNA_00794 0.54 -0.7
858,426 - CCNA_00794 0.54 -1.1
858,428 + CCNA_00794 0.55 -0.0
858,431 - CCNA_00794 0.55 +0.4
858,442 + CCNA_00794 0.56 +0.1
858,442 + CCNA_00794 0.56 -0.2
858,442 + CCNA_00794 0.56 +2.1
858,449 + CCNA_00794 0.56 -0.2
858,450 - CCNA_00794 0.56 -1.1
858,450 - CCNA_00794 0.56 -0.0
858,455 - CCNA_00794 0.57 +0.8
858,469 + CCNA_00794 0.58 +0.3
858,510 - CCNA_00794 0.61 +1.3
858,521 + CCNA_00794 0.62 -1.3
858,521 + CCNA_00794 0.62 -1.2
858,530 + CCNA_00794 0.63 +0.4
858,559 + CCNA_00794 0.66 +0.1
858,566 + CCNA_00794 0.66 -0.1
858,574 - CCNA_00794 0.67 -0.0
858,579 + CCNA_00794 0.67 +0.1
858,579 - CCNA_00794 0.67 +0.1
858,579 - CCNA_00794 0.67 -0.9
858,598 - CCNA_00794 0.69 -0.8
858,625 + CCNA_00794 0.71 -0.9
858,633 - CCNA_00794 0.72 +1.4
858,633 - CCNA_00794 0.72 -1.7
858,730 + CCNA_00794 0.80 +0.5
858,730 + CCNA_00794 0.80 -0.1
858,738 - CCNA_00794 0.81 +0.0
858,769 - CCNA_00794 0.83 +1.3
858,791 + CCNA_00794 0.85 -0.6
858,791 + CCNA_00794 0.85 +0.1
858,799 - CCNA_00794 0.86 -0.1
858,806 - CCNA_00794 0.86 -0.6
858,856 - +0.1
858,918 + -0.3
858,938 - +0.5
859,000 + -0.1
859,010 + +1.2
859,017 + -0.0
859,032 + +0.1
859,064 + CCNA_00795 0.14 -0.5
859,064 + CCNA_00795 0.14 -1.7
859,083 - CCNA_00795 0.17 -1.4
859,093 + CCNA_00795 0.19 -0.1
859,133 - CCNA_00795 0.25 -0.4
859,163 - CCNA_00795 0.30 -0.6
859,261 + CCNA_00795 0.46 -0.5
859,343 + CCNA_00795 0.60 -1.0
859,389 + CCNA_00795 0.67 -0.6
859,402 - CCNA_00795 0.69 -0.2
859,406 + CCNA_00795 0.70 +0.6
859,414 - CCNA_00795 0.71 -0.2
859,443 + CCNA_00795 0.76 -0.5
859,443 + CCNA_00795 0.76 +0.4
859,451 - CCNA_00795 0.77 +1.0
859,453 + CCNA_00795 0.78 +0.7
859,463 + CCNA_00795 0.79 -0.2
859,471 - CCNA_00795 0.81 +0.0
859,492 - CCNA_00795 0.84 +0.4
859,498 + CCNA_00795 0.85 -0.4
859,514 + CCNA_00795 0.88 -0.3
859,543 - +0.5
859,570 + -0.3
859,576 - +1.3
859,585 - -0.3
859,625 + -0.8
859,636 + -0.6
859,644 - +0.4
859,667 + +1.8
859,668 - +0.5
859,672 + -0.5
859,672 + -0.5
859,680 - -0.1
859,680 - +0.1
859,680 - -0.4
859,680 - +0.0
859,727 + -0.4
859,727 + +0.7
859,729 + -0.0
859,735 - CCNA_00796 0.10 +0.5
859,737 - CCNA_00796 0.10 +0.2
859,737 - CCNA_00796 0.10 +0.6
859,781 - CCNA_00796 0.13 -0.2
859,828 - CCNA_00796 0.17 +0.6
859,854 + CCNA_00796 0.18 -0.1
859,854 + CCNA_00796 0.18 +0.1
859,862 - CCNA_00796 0.19 +0.3
859,862 - CCNA_00796 0.19 -0.4
859,862 - CCNA_00796 0.19 -0.1
859,877 + CCNA_00796 0.20 +0.3
859,885 - CCNA_00796 0.20 +0.2
859,885 - CCNA_00796 0.20 -0.5
859,889 + CCNA_00796 0.21 +0.3
859,935 + CCNA_00796 0.24 +0.5

Or see this region's nucleotide sequence