Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00588

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00587 and CCNA_00588 are separated by 173 nucleotidesCCNA_00588 and CCNA_00589 are separated by 7 nucleotidesCCNA_00589 and CCNA_00590 are separated by 47 nucleotides CCNA_00587: CCNA_00587 - alpha/beta hydrolase family protein, at 615,934 to 617,430 _00587 CCNA_00588: CCNA_00588 - SapA domain protein, at 617,604 to 617,843 _00588 CCNA_00589: CCNA_00589 - hypothetical protein, at 617,851 to 618,567 _00589 CCNA_00590: CCNA_00590 - FixC-family flavoprotein dehydrogenase, at 618,615 to 619,724 _00590 Position (kb) 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 616.611 kb on - strand, within CCNA_00587at 616.616 kb on - strand, within CCNA_00587at 616.636 kb on - strand, within CCNA_00587at 616.636 kb on - strand, within CCNA_00587at 616.648 kb on + strand, within CCNA_00587at 616.656 kb on - strand, within CCNA_00587at 616.656 kb on - strand, within CCNA_00587at 616.658 kb on + strand, within CCNA_00587at 616.661 kb on + strand, within CCNA_00587at 616.666 kb on - strand, within CCNA_00587at 616.679 kb on - strand, within CCNA_00587at 616.679 kb on - strand, within CCNA_00587at 616.720 kb on + strand, within CCNA_00587at 616.735 kb on - strand, within CCNA_00587at 616.811 kb on - strand, within CCNA_00587at 616.829 kb on + strand, within CCNA_00587at 616.834 kb on + strand, within CCNA_00587at 616.834 kb on + strand, within CCNA_00587at 616.834 kb on + strand, within CCNA_00587at 616.834 kb on + strand, within CCNA_00587at 616.837 kb on - strand, within CCNA_00587at 616.842 kb on - strand, within CCNA_00587at 616.842 kb on - strand, within CCNA_00587at 616.842 kb on - strand, within CCNA_00587at 616.849 kb on + strand, within CCNA_00587at 616.849 kb on + strand, within CCNA_00587at 616.857 kb on - strand, within CCNA_00587at 616.902 kb on + strand, within CCNA_00587at 616.943 kb on + strand, within CCNA_00587at 616.946 kb on - strand, within CCNA_00587at 616.955 kb on + strand, within CCNA_00587at 616.972 kb on + strand, within CCNA_00587at 616.972 kb on - strand, within CCNA_00587at 617.024 kb on + strand, within CCNA_00587at 617.066 kb on + strand, within CCNA_00587at 617.071 kb on + strand, within CCNA_00587at 617.096 kb on + strand, within CCNA_00587at 617.096 kb on + strand, within CCNA_00587at 617.104 kb on - strand, within CCNA_00587at 617.109 kb on - strand, within CCNA_00587at 617.109 kb on - strand, within CCNA_00587at 617.156 kb on + strand, within CCNA_00587at 617.156 kb on - strand, within CCNA_00587at 617.157 kb on - strand, within CCNA_00587at 617.161 kb on + strand, within CCNA_00587at 617.166 kb on + strand, within CCNA_00587at 617.201 kb on + strand, within CCNA_00587at 617.234 kb on + strand, within CCNA_00587at 617.235 kb on + strand, within CCNA_00587at 617.235 kb on - strand, within CCNA_00587at 617.254 kb on - strand, within CCNA_00587at 617.256 kb on + strand, within CCNA_00587at 617.259 kb on - strand, within CCNA_00587at 617.269 kb on + strand, within CCNA_00587at 617.277 kb on - strand, within CCNA_00587at 617.285 kb on + strandat 617.285 kb on + strandat 617.334 kb on + strandat 617.341 kb on + strandat 617.341 kb on + strandat 617.341 kb on - strandat 617.441 kb on - strandat 617.451 kb on + strandat 617.465 kb on - strandat 617.475 kb on + strandat 617.484 kb on - strandat 617.493 kb on + strandat 617.501 kb on - strandat 617.501 kb on - strandat 617.501 kb on - strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.529 kb on - strandat 617.529 kb on - strandat 617.529 kb on - strandat 617.529 kb on - strandat 617.529 kb on - strandat 617.529 kb on - strandat 617.531 kb on + strandat 617.531 kb on + strandat 617.535 kb on + strandat 617.539 kb on - strandat 617.539 kb on - strandat 617.539 kb on - strandat 617.539 kb on - strandat 617.588 kb on + strandat 617.588 kb on + strandat 617.656 kb on - strand, within CCNA_00588at 617.664 kb on + strand, within CCNA_00588at 617.686 kb on - strand, within CCNA_00588at 617.693 kb on + strand, within CCNA_00588at 617.700 kb on - strand, within CCNA_00588at 617.701 kb on + strand, within CCNA_00588at 617.726 kb on - strand, within CCNA_00588at 617.798 kb on - strand, within CCNA_00588at 617.816 kb on - strand, within CCNA_00588at 617.868 kb on + strandat 617.881 kb on - strandat 617.904 kb on + strandat 617.907 kb on - strandat 617.925 kb on + strand, within CCNA_00589at 617.943 kb on - strand, within CCNA_00589at 617.945 kb on - strand, within CCNA_00589at 617.984 kb on + strand, within CCNA_00589at 617.984 kb on + strand, within CCNA_00589at 617.984 kb on + strand, within CCNA_00589at 618.002 kb on - strand, within CCNA_00589at 618.002 kb on - strand, within CCNA_00589at 618.029 kb on + strand, within CCNA_00589at 618.059 kb on - strand, within CCNA_00589at 618.082 kb on - strand, within CCNA_00589at 618.164 kb on + strand, within CCNA_00589at 618.164 kb on + strand, within CCNA_00589at 618.192 kb on + strand, within CCNA_00589at 618.206 kb on - strand, within CCNA_00589at 618.228 kb on + strand, within CCNA_00589at 618.236 kb on - strand, within CCNA_00589at 618.249 kb on + strand, within CCNA_00589at 618.260 kb on + strand, within CCNA_00589at 618.275 kb on + strand, within CCNA_00589at 618.302 kb on + strand, within CCNA_00589at 618.369 kb on + strand, within CCNA_00589at 618.393 kb on + strand, within CCNA_00589at 618.397 kb on - strand, within CCNA_00589at 618.406 kb on - strand, within CCNA_00589at 618.409 kb on + strand, within CCNA_00589at 618.451 kb on + strand, within CCNA_00589at 618.486 kb on - strand, within CCNA_00589at 618.538 kb on + strandat 618.538 kb on + strandat 618.543 kb on + strandat 618.544 kb on - strandat 618.545 kb on - strandat 618.546 kb on - strandat 618.546 kb on - strandat 618.546 kb on - strandat 618.610 kb on - strandat 618.611 kb on - strandat 618.611 kb on - strandat 618.629 kb on + strandat 618.644 kb on - strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.673 kb on + strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.691 kb on - strandat 618.694 kb on + strandat 618.725 kb on + strandat 618.733 kb on - strand, within CCNA_00590at 618.733 kb on - strand, within CCNA_00590at 618.733 kb on - strand, within CCNA_00590at 618.733 kb on - strand, within CCNA_00590at 618.758 kb on - strand, within CCNA_00590at 618.789 kb on + strand, within CCNA_00590at 618.808 kb on + strand, within CCNA_00590at 618.809 kb on - strand, within CCNA_00590at 618.828 kb on - strand, within CCNA_00590

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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616,611 - CCNA_00587 0.45 +0.3
616,616 - CCNA_00587 0.46 -0.6
616,636 - CCNA_00587 0.47 +1.0
616,636 - CCNA_00587 0.47 -0.6
616,648 + CCNA_00587 0.48 -0.4
616,656 - CCNA_00587 0.48 -0.1
616,656 - CCNA_00587 0.48 -1.9
616,658 + CCNA_00587 0.48 -0.1
616,661 + CCNA_00587 0.49 -0.2
616,666 - CCNA_00587 0.49 -0.3
616,679 - CCNA_00587 0.50 +0.2
616,679 - CCNA_00587 0.50 -0.1
616,720 + CCNA_00587 0.53 -0.3
616,735 - CCNA_00587 0.54 -0.3
616,811 - CCNA_00587 0.59 +1.5
616,829 + CCNA_00587 0.60 -1.9
616,834 + CCNA_00587 0.60 -0.2
616,834 + CCNA_00587 0.60 -0.6
616,834 + CCNA_00587 0.60 -1.0
616,834 + CCNA_00587 0.60 +0.4
616,837 - CCNA_00587 0.60 -0.9
616,842 - CCNA_00587 0.61 +0.5
616,842 - CCNA_00587 0.61 -0.2
616,842 - CCNA_00587 0.61 -0.4
616,849 + CCNA_00587 0.61 -1.2
616,849 + CCNA_00587 0.61 -0.0
616,857 - CCNA_00587 0.62 +0.4
616,902 + CCNA_00587 0.65 -0.0
616,943 + CCNA_00587 0.67 -0.8
616,946 - CCNA_00587 0.68 +0.2
616,955 + CCNA_00587 0.68 +0.5
616,972 + CCNA_00587 0.69 +1.0
616,972 - CCNA_00587 0.69 -0.8
617,024 + CCNA_00587 0.73 +0.2
617,066 + CCNA_00587 0.76 -0.2
617,071 + CCNA_00587 0.76 -0.8
617,096 + CCNA_00587 0.78 +0.5
617,096 + CCNA_00587 0.78 -0.9
617,104 - CCNA_00587 0.78 -0.5
617,109 - CCNA_00587 0.78 -0.9
617,109 - CCNA_00587 0.78 -0.1
617,156 + CCNA_00587 0.82 +1.3
617,156 - CCNA_00587 0.82 -0.4
617,157 - CCNA_00587 0.82 +1.8
617,161 + CCNA_00587 0.82 -0.3
617,166 + CCNA_00587 0.82 -0.6
617,201 + CCNA_00587 0.85 +0.1
617,234 + CCNA_00587 0.87 +0.8
617,235 + CCNA_00587 0.87 +0.3
617,235 - CCNA_00587 0.87 +0.6
617,254 - CCNA_00587 0.88 -0.8
617,256 + CCNA_00587 0.88 -2.2
617,259 - CCNA_00587 0.89 -0.8
617,269 + CCNA_00587 0.89 -0.0
617,277 - CCNA_00587 0.90 +0.4
617,285 + -0.1
617,285 + +2.6
617,334 + +0.3
617,341 + +0.6
617,341 + +0.1
617,341 - +0.5
617,441 - -0.1
617,451 + +0.0
617,465 - -1.5
617,475 + -0.8
617,484 - -1.4
617,493 + -0.5
617,501 - +0.3
617,501 - -0.2
617,501 - -0.4
617,521 + -1.8
617,521 + +0.5
617,521 + -0.9
617,521 + -0.1
617,521 + -0.6
617,521 + -2.6
617,529 - +0.4
617,529 - -0.9
617,529 - -0.7
617,529 - -0.9
617,529 - -0.9
617,529 - +0.2
617,531 + -0.9
617,531 + -2.9
617,535 + -0.0
617,539 - -0.4
617,539 - -0.5
617,539 - +0.8
617,539 - -0.3
617,588 + -0.5
617,588 + -1.3
617,656 - CCNA_00588 0.22 +0.3
617,664 + CCNA_00588 0.25 -0.4
617,686 - CCNA_00588 0.34 -0.6
617,693 + CCNA_00588 0.37 -0.1
617,700 - CCNA_00588 0.40 +0.3
617,701 + CCNA_00588 0.40 -1.5
617,726 - CCNA_00588 0.51 -1.6
617,798 - CCNA_00588 0.81 +0.2
617,816 - CCNA_00588 0.88 -0.2
617,868 + -0.0
617,881 - -0.3
617,904 + -0.2
617,907 - -0.1
617,925 + CCNA_00589 0.10 -0.1
617,943 - CCNA_00589 0.13 -0.1
617,945 - CCNA_00589 0.13 +0.8
617,984 + CCNA_00589 0.19 -0.6
617,984 + CCNA_00589 0.19 -0.2
617,984 + CCNA_00589 0.19 -1.3
618,002 - CCNA_00589 0.21 +0.3
618,002 - CCNA_00589 0.21 +0.7
618,029 + CCNA_00589 0.25 -0.4
618,059 - CCNA_00589 0.29 -0.9
618,082 - CCNA_00589 0.32 -0.2
618,164 + CCNA_00589 0.44 -0.7
618,164 + CCNA_00589 0.44 -1.0
618,192 + CCNA_00589 0.48 +0.5
618,206 - CCNA_00589 0.50 -0.1
618,228 + CCNA_00589 0.53 -0.2
618,236 - CCNA_00589 0.54 -1.1
618,249 + CCNA_00589 0.56 -0.8
618,260 + CCNA_00589 0.57 +2.4
618,275 + CCNA_00589 0.59 +0.8
618,302 + CCNA_00589 0.63 +2.0
618,369 + CCNA_00589 0.72 -2.0
618,393 + CCNA_00589 0.76 -0.6
618,397 - CCNA_00589 0.76 -1.1
618,406 - CCNA_00589 0.77 -1.2
618,409 + CCNA_00589 0.78 -1.2
618,451 + CCNA_00589 0.84 -1.5
618,486 - CCNA_00589 0.89 -0.1
618,538 + +0.7
618,538 + -0.4
618,543 + -1.5
618,544 - -0.1
618,545 - -0.2
618,546 - -0.1
618,546 - -0.3
618,546 - +1.4
618,610 - +1.2
618,611 - -1.1
618,611 - -0.0
618,629 + -1.5
618,644 - +0.3
618,670 + -0.4
618,670 + +0.1
618,670 + -0.0
618,670 + +0.5
618,670 + -0.4
618,673 + -2.0
618,678 - -0.7
618,678 - -0.0
618,678 - +0.8
618,678 - -0.1
618,691 - +0.2
618,694 + -0.0
618,725 + +0.6
618,733 - CCNA_00590 0.11 -1.6
618,733 - CCNA_00590 0.11 +0.3
618,733 - CCNA_00590 0.11 +0.1
618,733 - CCNA_00590 0.11 -0.8
618,758 - CCNA_00590 0.13 +0.4
618,789 + CCNA_00590 0.16 -0.2
618,808 + CCNA_00590 0.17 -0.4
618,809 - CCNA_00590 0.17 -0.6
618,828 - CCNA_00590 0.19 +0.1

Or see this region's nucleotide sequence