Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00583 and CCNA_00585 are separated by 118 nucleotides CCNA_00585 and CCNA_00586 are separated by 35 nucleotides
CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205
_00583
CCNA_00585: CCNA_00585 - hypothetical protein, at 613,324 to 614,379
_00585
CCNA_00586: CCNA_00586 - LytR/AlgR-family transcriptional regulator, at 614,415 to 615,746
_00586
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 612.330 kb on + strand, within CCNA_00583 at 612.362 kb on - strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.398 kb on + strand, within CCNA_00583 at 612.419 kb on - strand, within CCNA_00583 at 612.420 kb on - strand, within CCNA_00583 at 612.440 kb on - strand, within CCNA_00583 at 612.451 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.467 kb on + strand, within CCNA_00583 at 612.482 kb on + strand, within CCNA_00583 at 612.485 kb on - strand, within CCNA_00583 at 612.491 kb on - strand, within CCNA_00583 at 612.509 kb on + strand, within CCNA_00583 at 612.517 kb on - strand, within CCNA_00583 at 612.517 kb on - strand, within CCNA_00583 at 612.568 kb on - strand, within CCNA_00583 at 612.577 kb on - strand, within CCNA_00583 at 612.613 kb on + strand, within CCNA_00583 at 612.618 kb on + strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.649 kb on + strand, within CCNA_00583 at 612.661 kb on + strand, within CCNA_00583 at 612.662 kb on + strand, within CCNA_00583 at 612.667 kb on + strand, within CCNA_00583 at 612.679 kb on + strand, within CCNA_00583 at 612.795 kb on + strand, within CCNA_00583 at 612.804 kb on + strand, within CCNA_00583 at 612.812 kb on - strand, within CCNA_00583 at 612.816 kb on - strand, within CCNA_00583 at 612.841 kb on + strand, within CCNA_00583 at 612.849 kb on - strand, within CCNA_00583 at 612.849 kb on - strand, within CCNA_00583 at 612.849 kb on - strand, within CCNA_00583 at 612.863 kb on + strand, within CCNA_00583 at 612.912 kb on + strand, within CCNA_00583 at 612.916 kb on - strand, within CCNA_00583 at 613.032 kb on - strand, within CCNA_00583 at 613.038 kb on + strand, within CCNA_00583 at 613.045 kb on + strand, within CCNA_00583 at 613.045 kb on + strand, within CCNA_00583 at 613.053 kb on - strand, within CCNA_00583 at 613.084 kb on + strand at 613.110 kb on - strand at 613.155 kb on - strand at 613.164 kb on + strand at 613.164 kb on - strand at 613.394 kb on + strand at 613.402 kb on - strand at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.482 kb on + strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.497 kb on - strand, within CCNA_00585 at 613.506 kb on - strand, within CCNA_00585 at 613.511 kb on - strand, within CCNA_00585 at 613.575 kb on - strand, within CCNA_00585 at 613.577 kb on + strand, within CCNA_00585 at 613.580 kb on - strand, within CCNA_00585 at 613.598 kb on - strand, within CCNA_00585 at 613.614 kb on - strand, within CCNA_00585 at 613.653 kb on - strand, within CCNA_00585 at 613.687 kb on - strand, within CCNA_00585 at 613.744 kb on + strand, within CCNA_00585 at 613.777 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.788 kb on - strand, within CCNA_00585 at 613.790 kb on - strand, within CCNA_00585 at 613.872 kb on + strand, within CCNA_00585 at 613.872 kb on + strand, within CCNA_00585 at 613.882 kb on + strand, within CCNA_00585 at 613.908 kb on - strand, within CCNA_00585 at 613.911 kb on - strand, within CCNA_00585 at 613.914 kb on - strand, within CCNA_00585 at 613.928 kb on + strand, within CCNA_00585 at 613.979 kb on - strand, within CCNA_00585 at 614.000 kb on - strand, within CCNA_00585 at 614.038 kb on + strand, within CCNA_00585 at 614.041 kb on - strand, within CCNA_00585 at 614.046 kb on - strand, within CCNA_00585 at 614.054 kb on - strand, within CCNA_00585 at 614.077 kb on + strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.086 kb on + strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.094 kb on - strand, within CCNA_00585 at 614.096 kb on + strand, within CCNA_00585 at 614.137 kb on - strand, within CCNA_00585 at 614.137 kb on - strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585 at 614.168 kb on - strand, within CCNA_00585 at 614.230 kb on - strand, within CCNA_00585 at 614.230 kb on - strand, within CCNA_00585 at 614.232 kb on + strand, within CCNA_00585 at 614.232 kb on + strand, within CCNA_00585 at 614.232 kb on + strand, within CCNA_00585 at 614.253 kb on + strand, within CCNA_00585 at 614.260 kb on + strand, within CCNA_00585 at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.313 kb on + strand at 614.313 kb on + strand at 614.321 kb on - strand at 614.321 kb on - strand at 614.327 kb on + strand at 614.346 kb on - strand at 614.358 kb on - strand at 614.358 kb on - strand at 614.398 kb on - strand at 614.398 kb on - strand at 614.407 kb on + strand at 614.415 kb on - strand at 614.454 kb on + strand at 614.454 kb on + strand at 614.457 kb on - strand at 614.462 kb on - strand at 614.462 kb on - strand at 614.475 kb on + strand at 614.479 kb on - strand at 614.501 kb on - strand at 614.582 kb on - strand, within CCNA_00586 at 614.621 kb on - strand, within CCNA_00586 at 614.670 kb on - strand, within CCNA_00586 at 614.672 kb on + strand, within CCNA_00586 at 614.672 kb on + strand, within CCNA_00586 at 614.680 kb on - strand, within CCNA_00586 at 614.680 kb on - strand, within CCNA_00586 at 614.688 kb on + strand, within CCNA_00586 at 614.689 kb on - strand, within CCNA_00586 at 614.703 kb on - strand, within CCNA_00586 at 614.782 kb on + strand, within CCNA_00586 at 614.787 kb on + strand, within CCNA_00586 at 614.787 kb on + strand, within CCNA_00586 at 614.790 kb on - strand, within CCNA_00586 at 614.790 kb on - strand, within CCNA_00586 at 614.790 kb on - strand, within CCNA_00586 at 614.795 kb on - strand, within CCNA_00586 at 614.813 kb on + strand, within CCNA_00586 at 614.855 kb on + strand, within CCNA_00586 at 614.910 kb on + strand, within CCNA_00586 at 614.922 kb on + strand, within CCNA_00586 at 614.923 kb on + strand, within CCNA_00586 at 614.923 kb on + strand, within CCNA_00586 at 614.931 kb on - strand, within CCNA_00586 at 614.933 kb on + strand, within CCNA_00586 at 614.943 kb on + strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.983 kb on - strand, within CCNA_00586 at 614.993 kb on - strand, within CCNA_00586 at 615.024 kb on - strand, within CCNA_00586 at 615.045 kb on - strand, within CCNA_00586 at 615.071 kb on - strand, within CCNA_00586 at 615.086 kb on + strand, within CCNA_00586 at 615.089 kb on - strand, within CCNA_00586 at 615.181 kb on - strand, within CCNA_00586 at 615.181 kb on - strand, within CCNA_00586 at 615.191 kb on + strand, within CCNA_00586 at 615.225 kb on - strand, within CCNA_00586 at 615.270 kb on + strand, within CCNA_00586 at 615.306 kb on + strand, within CCNA_00586 at 615.313 kb on - strand, within CCNA_00586 at 615.317 kb on + strand, within CCNA_00586 at 615.378 kb on - strand, within CCNA_00586
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 612,330 + CCNA_00583 0.36 +0.2 612,362 - CCNA_00583 0.38 -2.2 612,364 + CCNA_00583 0.38 -0.1 612,364 + CCNA_00583 0.38 +0.2 612,364 + CCNA_00583 0.38 +0.3 612,372 - CCNA_00583 0.39 -2.0 612,398 + CCNA_00583 0.41 -0.8 612,419 - CCNA_00583 0.42 -0.4 612,420 - CCNA_00583 0.43 -0.1 612,440 - CCNA_00583 0.44 +0.2 612,451 + CCNA_00583 0.45 -1.0 612,456 + CCNA_00583 0.45 +0.3 612,456 + CCNA_00583 0.45 +0.5 612,467 + CCNA_00583 0.46 +2.0 612,482 + CCNA_00583 0.47 -0.2 612,485 - CCNA_00583 0.47 -0.1 612,491 - CCNA_00583 0.48 -0.8 612,509 + CCNA_00583 0.49 -0.2 612,517 - CCNA_00583 0.50 -0.4 612,517 - CCNA_00583 0.50 -0.4 612,568 - CCNA_00583 0.53 -0.9 612,577 - CCNA_00583 0.54 -1.9 612,613 + CCNA_00583 0.57 -1.5 612,618 + CCNA_00583 0.57 -0.9 612,621 - CCNA_00583 0.57 -1.1 612,626 - CCNA_00583 0.58 -0.0 612,649 + CCNA_00583 0.59 -1.5 612,661 + CCNA_00583 0.60 +0.0 612,662 + CCNA_00583 0.60 -0.7 612,667 + CCNA_00583 0.61 -0.2 612,679 + CCNA_00583 0.61 -1.0 612,795 + CCNA_00583 0.70 -0.9 612,804 + CCNA_00583 0.71 -0.0 612,812 - CCNA_00583 0.71 -1.5 612,816 - CCNA_00583 0.71 -0.9 612,841 + CCNA_00583 0.73 -0.4 612,849 - CCNA_00583 0.74 +0.5 612,849 - CCNA_00583 0.74 +0.1 612,849 - CCNA_00583 0.74 +0.9 612,863 + CCNA_00583 0.75 -0.8 612,912 + CCNA_00583 0.79 -0.0 612,916 - CCNA_00583 0.79 +1.6 613,032 - CCNA_00583 0.87 -0.2 613,038 + CCNA_00583 0.88 -0.8 613,045 + CCNA_00583 0.88 -0.5 613,045 + CCNA_00583 0.88 -0.5 613,053 - CCNA_00583 0.89 -1.0 613,084 + +0.5 613,110 - +0.1 613,155 - +1.6 613,164 + -0.6 613,164 - +0.1 613,394 + +0.0 613,402 - +1.4 613,464 + CCNA_00585 0.13 +0.1 613,464 + CCNA_00585 0.13 -0.7 613,472 - CCNA_00585 0.14 +0.5 613,472 - CCNA_00585 0.14 -0.4 613,472 - CCNA_00585 0.14 +0.8 613,472 - CCNA_00585 0.14 -1.4 613,472 - CCNA_00585 0.14 +0.0 613,472 - CCNA_00585 0.14 -1.7 613,472 - CCNA_00585 0.14 +0.0 613,472 - CCNA_00585 0.14 -1.2 613,472 - CCNA_00585 0.14 -0.4 613,472 - CCNA_00585 0.14 -0.1 613,472 - CCNA_00585 0.14 -0.9 613,472 - CCNA_00585 0.14 +0.6 613,478 + CCNA_00585 0.15 -0.2 613,482 + CCNA_00585 0.15 -0.8 613,496 - CCNA_00585 0.16 +0.1 613,497 - CCNA_00585 0.16 +1.0 613,506 - CCNA_00585 0.17 -0.8 613,511 - CCNA_00585 0.18 +0.4 613,575 - CCNA_00585 0.24 -0.1 613,577 + CCNA_00585 0.24 +0.1 613,580 - CCNA_00585 0.24 -0.2 613,598 - CCNA_00585 0.26 -1.2 613,614 - CCNA_00585 0.27 -1.0 613,653 - CCNA_00585 0.31 -0.1 613,687 - CCNA_00585 0.34 -1.3 613,744 + CCNA_00585 0.40 +0.1 613,777 + CCNA_00585 0.43 +1.0 613,782 + CCNA_00585 0.43 -0.7 613,788 - CCNA_00585 0.44 -0.9 613,790 - CCNA_00585 0.44 -1.4 613,872 + CCNA_00585 0.52 +0.0 613,872 + CCNA_00585 0.52 +0.5 613,882 + CCNA_00585 0.53 -1.3 613,908 - CCNA_00585 0.55 -0.4 613,911 - CCNA_00585 0.56 -0.5 613,914 - CCNA_00585 0.56 -0.9 613,928 + CCNA_00585 0.57 +0.7 613,979 - CCNA_00585 0.62 +0.3 614,000 - CCNA_00585 0.64 -1.3 614,038 + CCNA_00585 0.68 -0.3 614,041 - CCNA_00585 0.68 +0.2 614,046 - CCNA_00585 0.68 -1.7 614,054 - CCNA_00585 0.69 -1.0 614,077 + CCNA_00585 0.71 +0.1 614,079 + CCNA_00585 0.71 -0.8 614,086 + CCNA_00585 0.72 -1.4 614,087 - CCNA_00585 0.72 -0.2 614,087 - CCNA_00585 0.72 +0.5 614,094 - CCNA_00585 0.73 -2.0 614,096 + CCNA_00585 0.73 +2.2 614,137 - CCNA_00585 0.77 +0.5 614,137 - CCNA_00585 0.77 +0.8 614,140 + CCNA_00585 0.77 -2.0 614,140 + CCNA_00585 0.77 +0.6 614,148 - CCNA_00585 0.78 -1.4 614,148 - CCNA_00585 0.78 -0.6 614,148 - CCNA_00585 0.78 -1.0 614,148 - CCNA_00585 0.78 -0.1 614,148 - CCNA_00585 0.78 -0.5 614,158 - CCNA_00585 0.79 -0.2 614,168 - CCNA_00585 0.80 -0.3 614,230 - CCNA_00585 0.86 -0.1 614,230 - CCNA_00585 0.86 -0.1 614,232 + CCNA_00585 0.86 -0.5 614,232 + CCNA_00585 0.86 -1.1 614,232 + CCNA_00585 0.86 +0.5 614,253 + CCNA_00585 0.88 -0.2 614,260 + CCNA_00585 0.89 -3.0 614,280 + +0.3 614,280 + +0.2 614,280 + +0.3 614,280 + +0.5 614,280 + +0.5 614,280 + -0.1 614,280 + -0.3 614,280 + +0.4 614,280 + +0.6 614,280 + +1.3 614,280 + -0.6 614,280 + -0.6 614,280 + +0.5 614,280 + -0.4 614,280 + +0.1 614,280 + -0.4 614,280 + -0.2 614,280 + +0.4 614,280 + -0.2 614,280 + +0.5 614,280 + -0.7 614,280 + -1.5 614,280 + -0.3 614,280 + -1.1 614,280 + -0.2 614,280 + +1.6 614,280 + +0.8 614,280 + -0.4 614,280 + +0.4 614,280 + -0.7 614,280 + +1.0 614,280 + +0.1 614,280 + +2.0 614,280 + +0.2 614,280 + +1.6 614,280 + -0.2 614,280 + +0.9 614,280 + +0.7 614,280 + -0.0 614,280 + -0.7 614,280 + -1.0 614,280 + +1.0 614,280 + +0.2 614,288 - -0.2 614,288 - -0.6 614,288 - -0.6 614,288 - +0.5 614,288 - -0.6 614,288 - -2.6 614,288 - +0.7 614,288 - -1.0 614,288 - -0.7 614,288 - -1.3 614,288 - +0.5 614,288 - -1.1 614,288 - +0.3 614,288 - +1.1 614,288 - +0.2 614,288 - -0.2 614,288 - +0.9 614,288 - +0.2 614,288 - -0.1 614,288 - -0.9 614,288 - -0.9 614,288 - -0.5 614,288 - -0.3 614,288 - +0.2 614,288 - -1.5 614,288 - -0.3 614,288 - -0.8 614,288 - -0.9 614,288 - +2.3 614,288 - -0.6 614,288 - -1.0 614,288 - -0.5 614,313 + -0.7 614,313 + -1.1 614,321 - -0.3 614,321 - -0.6 614,327 + -0.3 614,346 - -1.9 614,358 - -1.3 614,358 - +0.1 614,398 - -0.4 614,398 - +0.0 614,407 + -0.1 614,415 - -1.2 614,454 + +0.4 614,454 + -0.1 614,457 - -1.2 614,462 - +0.7 614,462 - -0.3 614,475 + +0.2 614,479 - -0.1 614,501 - -0.1 614,582 - CCNA_00586 0.13 -0.6 614,621 - CCNA_00586 0.15 +0.2 614,670 - CCNA_00586 0.19 +0.7 614,672 + CCNA_00586 0.19 -0.4 614,672 + CCNA_00586 0.19 -0.6 614,680 - CCNA_00586 0.20 +1.3 614,680 - CCNA_00586 0.20 +0.2 614,688 + CCNA_00586 0.20 -0.9 614,689 - CCNA_00586 0.21 -0.1 614,703 - CCNA_00586 0.22 -0.4 614,782 + CCNA_00586 0.28 -0.8 614,787 + CCNA_00586 0.28 -0.8 614,787 + CCNA_00586 0.28 -0.0 614,790 - CCNA_00586 0.28 -0.6 614,790 - CCNA_00586 0.28 -0.0 614,790 - CCNA_00586 0.28 -0.2 614,795 - CCNA_00586 0.29 -0.3 614,813 + CCNA_00586 0.30 +0.6 614,855 + CCNA_00586 0.33 -0.9 614,910 + CCNA_00586 0.37 -0.9 614,922 + CCNA_00586 0.38 -0.7 614,923 + CCNA_00586 0.38 -0.1 614,923 + CCNA_00586 0.38 +0.2 614,931 - CCNA_00586 0.39 +0.1 614,933 + CCNA_00586 0.39 +0.2 614,943 + CCNA_00586 0.40 +0.2 614,951 - CCNA_00586 0.40 +0.5 614,951 - CCNA_00586 0.40 -0.9 614,951 - CCNA_00586 0.40 -0.2 614,983 - CCNA_00586 0.43 -0.4 614,993 - CCNA_00586 0.43 +0.9 615,024 - CCNA_00586 0.46 +0.5 615,045 - CCNA_00586 0.47 +0.3 615,071 - CCNA_00586 0.49 +0.4 615,086 + CCNA_00586 0.50 -2.6 615,089 - CCNA_00586 0.51 +1.2 615,181 - CCNA_00586 0.58 +0.8 615,181 - CCNA_00586 0.58 +0.1 615,191 + CCNA_00586 0.58 -0.4 615,225 - CCNA_00586 0.61 -0.5 615,270 + CCNA_00586 0.64 +0.5 615,306 + CCNA_00586 0.67 +0.9 615,313 - CCNA_00586 0.67 -0.1 615,317 + CCNA_00586 0.68 -1.7 615,378 - CCNA_00586 0.72 +0.5
Or see this region's nucleotide sequence