Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00245

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00243 and CCNA_00244 are separated by 142 nucleotidesCCNA_00244 and CCNA_00245 are separated by 28 nucleotidesCCNA_00245 and CCNA_00246 are separated by 44 nucleotidesCCNA_00246 and CCNA_00247 are separated by 141 nucleotides CCNA_00243: CCNA_00243 - hypothetical protein, at 256,412 to 256,810 _00243 CCNA_00244: CCNA_00244 - HAD superfamily phophatase, at 256,953 to 257,594 _00244 CCNA_00245: CCNA_00245 - pterin-4-alpha-carbinolamine dehydratase, at 257,623 to 257,907 _00245 CCNA_00246: CCNA_00246 - cyclohexanol dehydrogenase, at 257,952 to 258,737 _00246 CCNA_00247: CCNA_00247 - two-component receiver protein SpdR, at 258,879 to 259,436 _00247 Position (kb) 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 256.653 kb on + strand, within CCNA_00243at 256.657 kb on - strand, within CCNA_00243at 256.657 kb on - strand, within CCNA_00243at 256.682 kb on - strand, within CCNA_00243at 256.687 kb on - strand, within CCNA_00243at 256.705 kb on + strand, within CCNA_00243at 256.705 kb on + strand, within CCNA_00243at 256.710 kb on + strand, within CCNA_00243at 256.762 kb on + strand, within CCNA_00243at 256.806 kb on + strandat 256.860 kb on + strandat 256.868 kb on - strandat 256.878 kb on + strandat 256.991 kb on + strandat 256.999 kb on - strandat 257.034 kb on - strand, within CCNA_00244at 257.046 kb on + strand, within CCNA_00244at 257.052 kb on - strand, within CCNA_00244at 257.103 kb on + strand, within CCNA_00244at 257.110 kb on + strand, within CCNA_00244at 257.122 kb on - strand, within CCNA_00244at 257.125 kb on - strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.147 kb on + strand, within CCNA_00244at 257.152 kb on + strand, within CCNA_00244at 257.160 kb on - strand, within CCNA_00244at 257.173 kb on + strand, within CCNA_00244at 257.188 kb on + strand, within CCNA_00244at 257.190 kb on + strand, within CCNA_00244at 257.195 kb on + strand, within CCNA_00244at 257.196 kb on - strand, within CCNA_00244at 257.218 kb on + strand, within CCNA_00244at 257.233 kb on - strand, within CCNA_00244at 257.259 kb on + strand, within CCNA_00244at 257.267 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.272 kb on - strand, within CCNA_00244at 257.307 kb on + strand, within CCNA_00244at 257.308 kb on + strand, within CCNA_00244at 257.319 kb on + strand, within CCNA_00244at 257.319 kb on + strand, within CCNA_00244at 257.327 kb on - strand, within CCNA_00244at 257.327 kb on - strand, within CCNA_00244at 257.327 kb on - strand, within CCNA_00244at 257.327 kb on - strand, within CCNA_00244at 257.364 kb on - strand, within CCNA_00244at 257.366 kb on + strand, within CCNA_00244at 257.366 kb on + strand, within CCNA_00244at 257.374 kb on - strand, within CCNA_00244at 257.374 kb on - strand, within CCNA_00244at 257.386 kb on + strand, within CCNA_00244at 257.386 kb on + strand, within CCNA_00244at 257.394 kb on - strand, within CCNA_00244at 257.409 kb on + strand, within CCNA_00244at 257.452 kb on - strand, within CCNA_00244at 257.483 kb on + strand, within CCNA_00244at 257.534 kb on + strandat 257.599 kb on + strandat 257.606 kb on - strandat 257.617 kb on + strandat 257.617 kb on + strandat 257.617 kb on + strandat 257.625 kb on - strandat 257.625 kb on - strandat 257.664 kb on + strand, within CCNA_00245at 257.664 kb on + strand, within CCNA_00245at 257.672 kb on - strand, within CCNA_00245at 257.678 kb on - strand, within CCNA_00245at 257.706 kb on + strand, within CCNA_00245at 257.729 kb on + strand, within CCNA_00245at 257.764 kb on + strand, within CCNA_00245at 257.787 kb on + strand, within CCNA_00245at 257.801 kb on + strand, within CCNA_00245at 257.801 kb on - strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.809 kb on + strand, within CCNA_00245at 257.817 kb on - strand, within CCNA_00245at 257.827 kb on - strand, within CCNA_00245at 257.855 kb on + strand, within CCNA_00245at 257.871 kb on - strand, within CCNA_00245at 257.872 kb on - strand, within CCNA_00245at 257.886 kb on + strandat 257.886 kb on + strandat 257.895 kb on - strandat 257.960 kb on + strandat 257.960 kb on + strandat 257.968 kb on - strandat 258.006 kb on + strandat 258.041 kb on + strand, within CCNA_00246at 258.041 kb on + strand, within CCNA_00246at 258.041 kb on + strand, within CCNA_00246at 258.049 kb on - strand, within CCNA_00246at 258.073 kb on + strand, within CCNA_00246at 258.073 kb on + strand, within CCNA_00246at 258.110 kb on + strand, within CCNA_00246at 258.118 kb on - strand, within CCNA_00246at 258.132 kb on + strand, within CCNA_00246at 258.138 kb on + strand, within CCNA_00246at 258.140 kb on - strand, within CCNA_00246at 258.225 kb on - strand, within CCNA_00246at 258.238 kb on - strand, within CCNA_00246at 258.245 kb on + strand, within CCNA_00246at 258.259 kb on + strand, within CCNA_00246at 258.329 kb on - strand, within CCNA_00246at 258.343 kb on + strand, within CCNA_00246at 258.356 kb on - strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.477 kb on + strand, within CCNA_00246at 258.482 kb on + strand, within CCNA_00246at 258.482 kb on + strand, within CCNA_00246at 258.485 kb on - strand, within CCNA_00246at 258.485 kb on - strand, within CCNA_00246at 258.485 kb on - strand, within CCNA_00246at 258.490 kb on - strand, within CCNA_00246at 258.493 kb on + strand, within CCNA_00246at 258.524 kb on - strand, within CCNA_00246at 258.525 kb on + strand, within CCNA_00246at 258.525 kb on + strand, within CCNA_00246at 258.534 kb on + strand, within CCNA_00246at 258.544 kb on + strand, within CCNA_00246at 258.581 kb on + strand, within CCNA_00246at 258.582 kb on + strand, within CCNA_00246at 258.582 kb on + strand, within CCNA_00246at 258.582 kb on + strand, within CCNA_00246at 258.585 kb on - strand, within CCNA_00246at 258.590 kb on - strand, within CCNA_00246at 258.592 kb on + strand, within CCNA_00246at 258.600 kb on - strand, within CCNA_00246at 258.667 kb on - strandat 258.686 kb on + strandat 258.686 kb on + strandat 258.686 kb on + strandat 258.694 kb on - strandat 258.704 kb on + strandat 258.741 kb on + strandat 258.749 kb on - strandat 258.749 kb on - strandat 258.763 kb on + strandat 258.776 kb on + strandat 258.776 kb on + strandat 258.784 kb on - strandat 258.785 kb on - strandat 258.786 kb on + strandat 258.823 kb on + strandat 258.829 kb on + strandat 258.833 kb on + strandat 258.841 kb on - strandat 258.841 kb on - strandat 258.841 kb on - strandat 258.843 kb on - strandat 258.867 kb on + strandat 258.875 kb on - strandat 258.876 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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256,653 + CCNA_00243 0.60 -0.7
256,657 - CCNA_00243 0.61 +0.6
256,657 - CCNA_00243 0.61 +0.6
256,682 - CCNA_00243 0.68 -0.4
256,687 - CCNA_00243 0.69 +0.3
256,705 + CCNA_00243 0.73 +1.1
256,705 + CCNA_00243 0.73 -0.5
256,710 + CCNA_00243 0.75 -1.6
256,762 + CCNA_00243 0.88 -0.0
256,806 + -1.5
256,860 + +1.0
256,868 - -0.6
256,878 + -0.4
256,991 + -0.3
256,999 - -1.8
257,034 - CCNA_00244 0.13 -0.7
257,046 + CCNA_00244 0.14 +0.1
257,052 - CCNA_00244 0.15 -0.7
257,103 + CCNA_00244 0.23 -0.5
257,110 + CCNA_00244 0.24 -0.2
257,122 - CCNA_00244 0.26 +0.5
257,125 - CCNA_00244 0.27 +0.3
257,147 + CCNA_00244 0.30 +1.3
257,147 + CCNA_00244 0.30 +0.6
257,147 + CCNA_00244 0.30 -0.5
257,147 + CCNA_00244 0.30 +0.6
257,147 + CCNA_00244 0.30 -1.5
257,147 + CCNA_00244 0.30 +0.3
257,152 + CCNA_00244 0.31 -1.0
257,160 - CCNA_00244 0.32 -0.1
257,173 + CCNA_00244 0.34 -1.0
257,188 + CCNA_00244 0.37 -0.7
257,190 + CCNA_00244 0.37 -1.0
257,195 + CCNA_00244 0.38 -0.7
257,196 - CCNA_00244 0.38 -1.0
257,218 + CCNA_00244 0.41 -0.7
257,233 - CCNA_00244 0.44 -1.2
257,259 + CCNA_00244 0.48 -1.6
257,267 - CCNA_00244 0.49 -1.1
257,272 - CCNA_00244 0.50 -0.8
257,272 - CCNA_00244 0.50 -1.4
257,272 - CCNA_00244 0.50 -0.1
257,272 - CCNA_00244 0.50 +0.7
257,272 - CCNA_00244 0.50 -1.3
257,307 + CCNA_00244 0.55 -0.4
257,308 + CCNA_00244 0.55 -0.2
257,319 + CCNA_00244 0.57 -0.6
257,319 + CCNA_00244 0.57 +0.1
257,327 - CCNA_00244 0.58 +0.5
257,327 - CCNA_00244 0.58 +0.6
257,327 - CCNA_00244 0.58 +0.2
257,327 - CCNA_00244 0.58 -0.6
257,364 - CCNA_00244 0.64 +1.6
257,366 + CCNA_00244 0.64 +0.2
257,366 + CCNA_00244 0.64 +1.6
257,374 - CCNA_00244 0.66 -0.5
257,374 - CCNA_00244 0.66 +0.1
257,386 + CCNA_00244 0.67 -1.1
257,386 + CCNA_00244 0.67 -0.1
257,394 - CCNA_00244 0.69 +0.5
257,409 + CCNA_00244 0.71 +0.3
257,452 - CCNA_00244 0.78 -0.2
257,483 + CCNA_00244 0.83 -0.2
257,534 + -0.3
257,599 + +0.1
257,606 - -0.5
257,617 + -0.0
257,617 + +0.2
257,617 + -0.1
257,625 - -0.2
257,625 - -0.5
257,664 + CCNA_00245 0.14 +0.2
257,664 + CCNA_00245 0.14 -0.2
257,672 - CCNA_00245 0.17 -0.7
257,678 - CCNA_00245 0.19 -1.6
257,706 + CCNA_00245 0.29 -0.3
257,729 + CCNA_00245 0.37 +1.4
257,764 + CCNA_00245 0.49 +0.9
257,787 + CCNA_00245 0.58 +0.9
257,801 + CCNA_00245 0.62 +0.3
257,801 - CCNA_00245 0.62 -0.3
257,809 + CCNA_00245 0.65 -0.1
257,809 + CCNA_00245 0.65 -0.9
257,809 + CCNA_00245 0.65 -0.3
257,809 + CCNA_00245 0.65 -0.1
257,809 + CCNA_00245 0.65 -1.2
257,809 + CCNA_00245 0.65 +0.4
257,817 - CCNA_00245 0.68 -0.1
257,827 - CCNA_00245 0.72 -0.0
257,855 + CCNA_00245 0.81 -1.3
257,871 - CCNA_00245 0.87 -0.8
257,872 - CCNA_00245 0.87 -0.6
257,886 + -1.1
257,886 + -0.1
257,895 - +0.3
257,960 + -0.3
257,960 + -0.3
257,968 - +0.0
258,006 + +0.1
258,041 + CCNA_00246 0.11 -0.0
258,041 + CCNA_00246 0.11 -1.0
258,041 + CCNA_00246 0.11 -0.2
258,049 - CCNA_00246 0.12 +0.2
258,073 + CCNA_00246 0.15 +0.4
258,073 + CCNA_00246 0.15 -0.6
258,110 + CCNA_00246 0.20 -0.0
258,118 - CCNA_00246 0.21 -0.7
258,132 + CCNA_00246 0.23 +0.1
258,138 + CCNA_00246 0.24 +0.1
258,140 - CCNA_00246 0.24 +0.8
258,225 - CCNA_00246 0.35 +2.3
258,238 - CCNA_00246 0.36 -1.1
258,245 + CCNA_00246 0.37 +0.0
258,259 + CCNA_00246 0.39 -1.2
258,329 - CCNA_00246 0.48 -1.0
258,343 + CCNA_00246 0.50 -1.9
258,356 - CCNA_00246 0.51 -0.4
258,477 + CCNA_00246 0.67 -0.7
258,477 + CCNA_00246 0.67 -0.5
258,482 + CCNA_00246 0.67 -0.7
258,482 + CCNA_00246 0.67 -0.2
258,485 - CCNA_00246 0.68 -0.2
258,485 - CCNA_00246 0.68 -0.4
258,485 - CCNA_00246 0.68 -0.4
258,490 - CCNA_00246 0.68 -0.6
258,493 + CCNA_00246 0.69 +0.3
258,524 - CCNA_00246 0.73 +0.2
258,525 + CCNA_00246 0.73 +0.2
258,525 + CCNA_00246 0.73 -0.0
258,534 + CCNA_00246 0.74 +0.1
258,544 + CCNA_00246 0.75 -0.3
258,581 + CCNA_00246 0.80 -1.1
258,582 + CCNA_00246 0.80 +1.3
258,582 + CCNA_00246 0.80 -0.1
258,582 + CCNA_00246 0.80 +0.7
258,585 - CCNA_00246 0.81 +0.7
258,590 - CCNA_00246 0.81 -0.6
258,592 + CCNA_00246 0.81 +0.6
258,600 - CCNA_00246 0.82 -0.2
258,667 - -0.8
258,686 + -0.2
258,686 + -0.3
258,686 + +1.3
258,694 - +0.1
258,704 + +0.6
258,741 + -2.1
258,749 - -0.4
258,749 - -0.7
258,763 + -0.7
258,776 + +0.0
258,776 + -0.1
258,784 - +0.2
258,785 - +0.0
258,786 + +0.0
258,823 + +0.2
258,829 + -0.3
258,833 + -0.1
258,841 - +0.3
258,841 - -0.1
258,841 - +1.0
258,843 - -0.3
258,867 + +0.4
258,875 - +0.7
258,876 - -0.2

Or see this region's nucleotide sequence