Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00217

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00215 and CCNA_00216 are separated by 67 nucleotidesCCNA_00216 and CCNA_00217 are separated by 114 nucleotidesCCNA_00217 and CCNA_00218 are separated by 3 nucleotidesCCNA_00218 and CCNA_00220 are separated by 152 nucleotides CCNA_00215: CCNA_00215 - SapC surface layer protein, at 232,614 to 233,402 _00215 CCNA_00216: CCNA_00216 - hot dog superfamily protein, at 233,470 to 233,862 _00216 CCNA_00217: CCNA_00217 - thiol:disulfide interchange protein DsbD, at 233,977 to 236,127 _00217 CCNA_00218: CCNA_00218 - hypothetical protein, at 236,131 to 236,877 _00218 CCNA_00220: CCNA_00220 - thiol-disulfide isomerase and thioredoxin, at 237,030 to 237,635 _00220 Position (kb) 233 234 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 233.015 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.016 kb on + strand, within CCNA_00215at 233.023 kb on - strand, within CCNA_00215at 233.023 kb on - strand, within CCNA_00215at 233.030 kb on + strand, within CCNA_00215at 233.038 kb on - strand, within CCNA_00215at 233.038 kb on - strand, within CCNA_00215at 233.063 kb on - strand, within CCNA_00215at 233.069 kb on - strand, within CCNA_00215at 233.125 kb on + strand, within CCNA_00215at 233.158 kb on - strand, within CCNA_00215at 233.167 kb on - strand, within CCNA_00215at 233.170 kb on + strand, within CCNA_00215at 233.170 kb on + strand, within CCNA_00215at 233.174 kb on + strand, within CCNA_00215at 233.178 kb on - strand, within CCNA_00215at 233.178 kb on - strand, within CCNA_00215at 233.178 kb on - strand, within CCNA_00215at 233.212 kb on - strand, within CCNA_00215at 233.236 kb on - strand, within CCNA_00215at 233.276 kb on + strand, within CCNA_00215at 233.276 kb on - strand, within CCNA_00215at 233.307 kb on + strand, within CCNA_00215at 233.307 kb on + strand, within CCNA_00215at 233.307 kb on + strand, within CCNA_00215at 233.312 kb on + strand, within CCNA_00215at 233.312 kb on + strand, within CCNA_00215at 233.315 kb on - strand, within CCNA_00215at 233.320 kb on - strand, within CCNA_00215at 233.320 kb on - strand, within CCNA_00215at 233.341 kb on + strandat 233.386 kb on - strandat 233.386 kb on - strandat 233.399 kb on - strandat 233.445 kb on - strandat 233.504 kb on - strandat 233.508 kb on - strandat 233.531 kb on + strand, within CCNA_00216at 233.555 kb on + strand, within CCNA_00216at 233.563 kb on - strand, within CCNA_00216at 233.610 kb on - strand, within CCNA_00216at 233.646 kb on - strand, within CCNA_00216at 233.712 kb on - strand, within CCNA_00216at 233.750 kb on + strand, within CCNA_00216at 233.782 kb on + strand, within CCNA_00216at 233.790 kb on - strand, within CCNA_00216at 233.805 kb on + strand, within CCNA_00216at 233.903 kb on + strandat 233.915 kb on + strandat 233.943 kb on + strandat 233.971 kb on - strandat 233.988 kb on - strandat 234.004 kb on + strandat 234.031 kb on - strandat 234.051 kb on - strandat 234.051 kb on - strandat 235.650 kb on + strand, within CCNA_00217at 235.652 kb on - strand, within CCNA_00217at 236.165 kb on + strandat 236.186 kb on + strandat 236.186 kb on + strandat 236.194 kb on - strandat 236.194 kb on - strandat 236.194 kb on - strandat 236.228 kb on + strand, within CCNA_00218at 236.228 kb on + strand, within CCNA_00218at 236.231 kb on - strand, within CCNA_00218at 236.236 kb on - strand, within CCNA_00218at 236.236 kb on - strand, within CCNA_00218at 236.255 kb on + strand, within CCNA_00218at 236.255 kb on + strand, within CCNA_00218at 236.263 kb on - strand, within CCNA_00218at 236.263 kb on - strand, within CCNA_00218at 236.277 kb on - strand, within CCNA_00218at 236.345 kb on - strand, within CCNA_00218at 236.347 kb on - strand, within CCNA_00218at 236.386 kb on + strand, within CCNA_00218at 236.386 kb on + strand, within CCNA_00218at 236.386 kb on + strand, within CCNA_00218at 236.387 kb on + strand, within CCNA_00218at 236.387 kb on + strand, within CCNA_00218at 236.394 kb on - strand, within CCNA_00218at 236.394 kb on - strand, within CCNA_00218at 236.395 kb on - strand, within CCNA_00218at 236.417 kb on + strand, within CCNA_00218at 236.417 kb on + strand, within CCNA_00218at 236.437 kb on - strand, within CCNA_00218at 236.445 kb on + strand, within CCNA_00218at 236.453 kb on - strand, within CCNA_00218at 236.506 kb on - strand, within CCNA_00218at 236.519 kb on + strand, within CCNA_00218at 236.519 kb on + strand, within CCNA_00218at 236.519 kb on + strand, within CCNA_00218at 236.527 kb on - strand, within CCNA_00218at 236.527 kb on - strand, within CCNA_00218at 236.527 kb on - strand, within CCNA_00218at 236.527 kb on - strand, within CCNA_00218at 236.533 kb on - strand, within CCNA_00218at 236.538 kb on - strand, within CCNA_00218at 236.559 kb on + strand, within CCNA_00218at 236.561 kb on - strand, within CCNA_00218at 236.578 kb on + strand, within CCNA_00218at 236.699 kb on - strand, within CCNA_00218at 236.699 kb on - strand, within CCNA_00218at 236.762 kb on - strand, within CCNA_00218at 236.789 kb on - strand, within CCNA_00218at 236.791 kb on + strand, within CCNA_00218at 236.791 kb on + strand, within CCNA_00218at 236.799 kb on - strand, within CCNA_00218at 236.810 kb on + strandat 236.810 kb on + strandat 236.810 kb on + strandat 236.810 kb on + strandat 236.818 kb on - strandat 236.820 kb on + strandat 236.820 kb on + strandat 236.820 kb on - strandat 236.836 kb on + strandat 236.838 kb on - strandat 236.875 kb on + strandat 236.880 kb on - strandat 236.889 kb on - strandat 236.902 kb on - strandat 236.945 kb on - strandat 237.049 kb on - strandat 237.101 kb on - strand, within CCNA_00220

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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233,015 + CCNA_00215 0.51 +0.9
233,015 + CCNA_00215 0.51 +0.3
233,015 + CCNA_00215 0.51 -0.1
233,015 + CCNA_00215 0.51 -0.7
233,015 + CCNA_00215 0.51 -0.8
233,016 + CCNA_00215 0.51 -0.3
233,023 - CCNA_00215 0.52 -1.7
233,023 - CCNA_00215 0.52 -0.8
233,030 + CCNA_00215 0.53 +0.3
233,038 - CCNA_00215 0.54 -0.3
233,038 - CCNA_00215 0.54 +0.9
233,063 - CCNA_00215 0.57 -0.5
233,069 - CCNA_00215 0.58 -0.7
233,125 + CCNA_00215 0.65 +0.1
233,158 - CCNA_00215 0.69 -1.3
233,167 - CCNA_00215 0.70 +0.2
233,170 + CCNA_00215 0.70 +0.2
233,170 + CCNA_00215 0.70 -0.4
233,174 + CCNA_00215 0.71 -0.1
233,178 - CCNA_00215 0.71 -0.0
233,178 - CCNA_00215 0.71 +0.6
233,178 - CCNA_00215 0.71 -0.9
233,212 - CCNA_00215 0.76 -0.1
233,236 - CCNA_00215 0.79 -0.7
233,276 + CCNA_00215 0.84 +0.5
233,276 - CCNA_00215 0.84 +0.3
233,307 + CCNA_00215 0.88 -0.3
233,307 + CCNA_00215 0.88 +0.3
233,307 + CCNA_00215 0.88 -0.5
233,312 + CCNA_00215 0.88 +0.5
233,312 + CCNA_00215 0.88 +0.2
233,315 - CCNA_00215 0.89 -1.4
233,320 - CCNA_00215 0.89 +0.2
233,320 - CCNA_00215 0.89 +1.1
233,341 + -0.3
233,386 - +0.1
233,386 - +0.1
233,399 - -0.5
233,445 - +0.0
233,504 - -1.1
233,508 - -0.0
233,531 + CCNA_00216 0.16 -0.1
233,555 + CCNA_00216 0.22 -0.4
233,563 - CCNA_00216 0.24 +0.0
233,610 - CCNA_00216 0.36 -0.2
233,646 - CCNA_00216 0.45 +0.2
233,712 - CCNA_00216 0.62 +0.5
233,750 + CCNA_00216 0.71 -0.2
233,782 + CCNA_00216 0.79 +0.3
233,790 - CCNA_00216 0.81 +0.4
233,805 + CCNA_00216 0.85 -0.6
233,903 + -0.6
233,915 + -0.3
233,943 + -0.4
233,971 - +0.1
233,988 - -0.6
234,004 + -1.1
234,031 - +0.2
234,051 - +1.6
234,051 - +0.3
235,650 + CCNA_00217 0.78 -1.2
235,652 - CCNA_00217 0.78 -1.3
236,165 + -0.5
236,186 + -0.7
236,186 + -0.5
236,194 - +0.3
236,194 - +2.2
236,194 - +0.3
236,228 + CCNA_00218 0.13 +0.3
236,228 + CCNA_00218 0.13 -0.3
236,231 - CCNA_00218 0.13 -0.4
236,236 - CCNA_00218 0.14 +0.3
236,236 - CCNA_00218 0.14 +0.3
236,255 + CCNA_00218 0.17 -0.2
236,255 + CCNA_00218 0.17 +0.8
236,263 - CCNA_00218 0.18 +0.3
236,263 - CCNA_00218 0.18 -1.6
236,277 - CCNA_00218 0.20 +0.2
236,345 - CCNA_00218 0.29 -0.2
236,347 - CCNA_00218 0.29 +0.5
236,386 + CCNA_00218 0.34 -0.7
236,386 + CCNA_00218 0.34 +0.1
236,386 + CCNA_00218 0.34 -1.0
236,387 + CCNA_00218 0.34 +0.5
236,387 + CCNA_00218 0.34 +0.2
236,394 - CCNA_00218 0.35 -0.3
236,394 - CCNA_00218 0.35 +1.2
236,395 - CCNA_00218 0.35 +1.3
236,417 + CCNA_00218 0.38 +0.3
236,417 + CCNA_00218 0.38 +1.1
236,437 - CCNA_00218 0.41 -2.9
236,445 + CCNA_00218 0.42 +0.4
236,453 - CCNA_00218 0.43 +0.5
236,506 - CCNA_00218 0.50 +0.3
236,519 + CCNA_00218 0.52 +1.2
236,519 + CCNA_00218 0.52 +0.0
236,519 + CCNA_00218 0.52 -0.5
236,527 - CCNA_00218 0.53 +0.9
236,527 - CCNA_00218 0.53 +0.2
236,527 - CCNA_00218 0.53 -0.0
236,527 - CCNA_00218 0.53 +1.5
236,533 - CCNA_00218 0.54 +0.3
236,538 - CCNA_00218 0.54 +0.2
236,559 + CCNA_00218 0.57 +0.3
236,561 - CCNA_00218 0.58 -0.7
236,578 + CCNA_00218 0.60 +0.7
236,699 - CCNA_00218 0.76 -0.7
236,699 - CCNA_00218 0.76 -0.2
236,762 - CCNA_00218 0.84 +0.8
236,789 - CCNA_00218 0.88 +0.3
236,791 + CCNA_00218 0.88 -0.6
236,791 + CCNA_00218 0.88 -0.1
236,799 - CCNA_00218 0.89 +0.1
236,810 + -2.0
236,810 + +0.6
236,810 + -0.4
236,810 + +0.2
236,818 - +0.1
236,820 + -0.2
236,820 + -0.5
236,820 - +0.5
236,836 + +0.0
236,838 - -0.0
236,875 + +0.1
236,880 - -0.1
236,889 - +1.1
236,902 - +0.2
236,945 - -1.3
237,049 - -1.4
237,101 - CCNA_00220 0.12 +0.4

Or see this region's nucleotide sequence