Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00199

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00197 and CCNA_00198 overlap by 4 nucleotidesCCNA_00198 and CCNA_00199 are separated by 130 nucleotidesCCNA_00199 and CCNA_00200 are separated by 52 nucleotides CCNA_00197: CCNA_00197 - LSU ribosomal protein L19P, at 211,121 to 211,522 _00197 CCNA_00198: CCNA_00198 - tRNA (guanine-N1) -methyltransferase, at 211,519 to 212,256 _00198 CCNA_00199: CCNA_00199 - TadG/vWA-family protein, at 212,387 to 214,267 _00199 CCNA_00200: CCNA_00200 - 2OG-Fe(II) oxygenase superfamily protein, at 214,320 to 215,255 _00200 Position (kb) 212 213 214 215Strain fitness (log2 ratio) -2 -1 0 1at 211.561 kb on - strandat 212.288 kb on - strandat 212.288 kb on - strandat 212.293 kb on + strandat 212.295 kb on - strandat 212.295 kb on - strandat 212.316 kb on - strandat 212.325 kb on + strandat 212.377 kb on + strandat 212.382 kb on + strandat 212.382 kb on + strandat 212.382 kb on + strandat 212.398 kb on + strandat 212.409 kb on + strandat 212.415 kb on + strandat 212.423 kb on - strandat 212.448 kb on + strandat 212.464 kb on - strandat 212.492 kb on + strandat 212.500 kb on - strandat 212.520 kb on + strandat 212.529 kb on + strandat 212.529 kb on + strandat 212.529 kb on - strandat 212.529 kb on - strandat 212.529 kb on - strandat 212.530 kb on + strandat 212.574 kb on - strandat 212.586 kb on + strand, within CCNA_00199at 212.633 kb on - strand, within CCNA_00199at 212.638 kb on - strand, within CCNA_00199at 212.638 kb on - strand, within CCNA_00199at 212.675 kb on + strand, within CCNA_00199at 212.675 kb on + strand, within CCNA_00199at 212.746 kb on + strand, within CCNA_00199at 212.771 kb on - strand, within CCNA_00199at 212.850 kb on - strand, within CCNA_00199at 212.858 kb on + strand, within CCNA_00199at 212.858 kb on + strand, within CCNA_00199at 212.946 kb on + strand, within CCNA_00199at 212.954 kb on - strand, within CCNA_00199at 212.994 kb on - strand, within CCNA_00199at 212.999 kb on - strand, within CCNA_00199at 213.039 kb on + strand, within CCNA_00199at 213.042 kb on - strand, within CCNA_00199at 213.047 kb on - strand, within CCNA_00199at 213.047 kb on - strand, within CCNA_00199at 213.047 kb on - strand, within CCNA_00199at 213.057 kb on - strand, within CCNA_00199at 213.057 kb on - strand, within CCNA_00199at 213.057 kb on - strand, within CCNA_00199at 213.084 kb on - strand, within CCNA_00199at 213.104 kb on + strand, within CCNA_00199at 213.109 kb on + strand, within CCNA_00199at 213.114 kb on - strand, within CCNA_00199at 213.143 kb on - strand, within CCNA_00199at 213.144 kb on + strand, within CCNA_00199at 213.144 kb on + strand, within CCNA_00199at 213.152 kb on - strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.154 kb on + strand, within CCNA_00199at 213.159 kb on - strand, within CCNA_00199at 213.159 kb on - strand, within CCNA_00199at 213.162 kb on - strand, within CCNA_00199at 213.162 kb on - strand, within CCNA_00199at 213.169 kb on + strand, within CCNA_00199at 213.214 kb on + strand, within CCNA_00199at 213.222 kb on - strand, within CCNA_00199at 213.226 kb on + strand, within CCNA_00199at 213.226 kb on + strand, within CCNA_00199at 213.231 kb on + strand, within CCNA_00199at 213.231 kb on - strand, within CCNA_00199at 213.234 kb on - strand, within CCNA_00199at 213.239 kb on - strand, within CCNA_00199at 213.249 kb on - strand, within CCNA_00199at 213.259 kb on - strand, within CCNA_00199at 213.303 kb on - strand, within CCNA_00199at 213.313 kb on - strand, within CCNA_00199at 213.313 kb on - strand, within CCNA_00199at 213.313 kb on - strand, within CCNA_00199at 213.313 kb on - strand, within CCNA_00199at 213.322 kb on - strand, within CCNA_00199at 213.399 kb on + strand, within CCNA_00199at 213.404 kb on + strand, within CCNA_00199at 213.404 kb on + strand, within CCNA_00199at 213.407 kb on - strand, within CCNA_00199at 213.407 kb on - strand, within CCNA_00199at 213.418 kb on + strand, within CCNA_00199at 213.427 kb on + strand, within CCNA_00199at 213.438 kb on + strand, within CCNA_00199at 213.478 kb on - strand, within CCNA_00199at 213.494 kb on + strand, within CCNA_00199at 213.494 kb on + strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.502 kb on - strand, within CCNA_00199at 213.527 kb on - strand, within CCNA_00199at 213.529 kb on - strand, within CCNA_00199at 213.536 kb on + strand, within CCNA_00199at 213.565 kb on - strand, within CCNA_00199at 213.575 kb on + strand, within CCNA_00199at 213.577 kb on - strand, within CCNA_00199at 213.586 kb on + strand, within CCNA_00199at 213.594 kb on - strand, within CCNA_00199at 213.594 kb on - strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.631 kb on + strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.639 kb on - strand, within CCNA_00199at 213.640 kb on - strand, within CCNA_00199at 213.659 kb on + strand, within CCNA_00199at 213.660 kb on - strand, within CCNA_00199at 213.667 kb on - strand, within CCNA_00199at 213.667 kb on - strand, within CCNA_00199at 213.689 kb on + strand, within CCNA_00199at 213.689 kb on + strand, within CCNA_00199at 213.691 kb on + strand, within CCNA_00199at 213.711 kb on + strand, within CCNA_00199at 213.733 kb on + strand, within CCNA_00199at 213.733 kb on + strand, within CCNA_00199at 213.733 kb on + strand, within CCNA_00199at 213.741 kb on - strand, within CCNA_00199at 213.762 kb on - strand, within CCNA_00199at 213.808 kb on - strand, within CCNA_00199at 213.814 kb on + strand, within CCNA_00199at 213.815 kb on + strand, within CCNA_00199at 213.819 kb on + strand, within CCNA_00199at 213.821 kb on + strand, within CCNA_00199at 213.823 kb on - strand, within CCNA_00199at 213.866 kb on + strand, within CCNA_00199at 213.879 kb on - strand, within CCNA_00199at 213.892 kb on + strand, within CCNA_00199at 213.893 kb on + strand, within CCNA_00199at 213.960 kb on - strand, within CCNA_00199at 213.968 kb on - strand, within CCNA_00199at 213.979 kb on - strand, within CCNA_00199at 213.994 kb on + strand, within CCNA_00199at 214.041 kb on + strand, within CCNA_00199at 214.041 kb on + strand, within CCNA_00199at 214.071 kb on - strand, within CCNA_00199at 214.098 kb on - strandat 214.107 kb on - strandat 214.121 kb on + strandat 214.139 kb on - strandat 214.200 kb on + strandat 214.205 kb on + strandat 214.228 kb on - strandat 214.240 kb on - strandat 214.240 kb on - strandat 214.242 kb on + strandat 214.250 kb on - strandat 214.318 kb on + strandat 214.326 kb on - strandat 214.355 kb on - strandat 214.367 kb on - strandat 214.367 kb on - strandat 214.384 kb on - strandat 214.413 kb on + strandat 214.416 kb on - strand, within CCNA_00200at 214.421 kb on - strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.423 kb on + strand, within CCNA_00200at 214.463 kb on + strand, within CCNA_00200at 214.466 kb on - strand, within CCNA_00200at 214.468 kb on + strand, within CCNA_00200at 214.481 kb on - strand, within CCNA_00200at 214.481 kb on - strand, within CCNA_00200at 214.491 kb on - strand, within CCNA_00200at 214.501 kb on + strand, within CCNA_00200at 214.515 kb on + strand, within CCNA_00200at 214.520 kb on - strand, within CCNA_00200at 214.522 kb on + strand, within CCNA_00200at 214.523 kb on - strand, within CCNA_00200at 214.623 kb on + strand, within CCNA_00200at 214.631 kb on + strand, within CCNA_00200at 214.631 kb on - strand, within CCNA_00200at 214.666 kb on - strand, within CCNA_00200at 214.698 kb on - strand, within CCNA_00200at 214.799 kb on - strand, within CCNA_00200at 214.818 kb on + strand, within CCNA_00200at 214.851 kb on + strand, within CCNA_00200at 214.860 kb on - strand, within CCNA_00200at 214.980 kb on + strand, within CCNA_00200at 214.988 kb on - strand, within CCNA_00200at 215.037 kb on + strand, within CCNA_00200at 215.037 kb on + strand, within CCNA_00200at 215.037 kb on + strand, within CCNA_00200at 215.046 kb on - strand, within CCNA_00200at 215.091 kb on - strand, within CCNA_00200at 215.100 kb on + strand, within CCNA_00200at 215.100 kb on + strand, within CCNA_00200at 215.100 kb on + strand, within CCNA_00200at 215.108 kb on - strand, within CCNA_00200at 215.108 kb on - strand, within CCNA_00200at 215.127 kb on + strand, within CCNA_00200at 215.165 kb on - strandat 215.165 kb on - strandat 215.184 kb on - strandat 215.186 kb on + strandat 215.205 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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211,561 - +0.2
212,288 - +0.4
212,288 - +1.2
212,293 + +0.7
212,295 - -0.6
212,295 - -0.2
212,316 - -0.7
212,325 + +0.7
212,377 + -2.2
212,382 + +0.2
212,382 + +0.1
212,382 + -0.1
212,398 + -0.2
212,409 + -1.0
212,415 + +1.7
212,423 - +0.4
212,448 + -0.0
212,464 - +0.3
212,492 + +0.1
212,500 - -0.0
212,520 + +1.7
212,529 + -1.2
212,529 + -0.6
212,529 - -0.6
212,529 - -0.3
212,529 - +0.7
212,530 + -0.5
212,574 - -0.9
212,586 + CCNA_00199 0.11 -0.2
212,633 - CCNA_00199 0.13 -0.4
212,638 - CCNA_00199 0.13 -0.4
212,638 - CCNA_00199 0.13 -0.7
212,675 + CCNA_00199 0.15 +0.3
212,675 + CCNA_00199 0.15 -0.2
212,746 + CCNA_00199 0.19 +0.0
212,771 - CCNA_00199 0.20 -0.1
212,850 - CCNA_00199 0.25 -1.0
212,858 + CCNA_00199 0.25 -0.4
212,858 + CCNA_00199 0.25 +0.3
212,946 + CCNA_00199 0.30 +0.3
212,954 - CCNA_00199 0.30 -0.8
212,994 - CCNA_00199 0.32 -0.1
212,999 - CCNA_00199 0.33 -1.2
213,039 + CCNA_00199 0.35 +0.7
213,042 - CCNA_00199 0.35 -0.4
213,047 - CCNA_00199 0.35 -0.1
213,047 - CCNA_00199 0.35 +0.1
213,047 - CCNA_00199 0.35 +0.0
213,057 - CCNA_00199 0.36 -1.2
213,057 - CCNA_00199 0.36 +1.1
213,057 - CCNA_00199 0.36 +0.9
213,084 - CCNA_00199 0.37 -0.3
213,104 + CCNA_00199 0.38 -0.1
213,109 + CCNA_00199 0.38 -0.3
213,114 - CCNA_00199 0.39 -0.1
213,143 - CCNA_00199 0.40 -0.2
213,144 + CCNA_00199 0.40 -0.1
213,144 + CCNA_00199 0.40 -0.8
213,152 - CCNA_00199 0.41 -0.7
213,154 + CCNA_00199 0.41 +0.1
213,154 + CCNA_00199 0.41 -0.6
213,154 + CCNA_00199 0.41 +0.2
213,154 + CCNA_00199 0.41 +0.2
213,154 + CCNA_00199 0.41 +0.2
213,154 + CCNA_00199 0.41 -0.2
213,154 + CCNA_00199 0.41 -0.3
213,159 - CCNA_00199 0.41 -1.0
213,159 - CCNA_00199 0.41 +1.0
213,162 - CCNA_00199 0.41 +1.1
213,162 - CCNA_00199 0.41 +0.0
213,169 + CCNA_00199 0.42 +1.0
213,214 + CCNA_00199 0.44 -1.7
213,222 - CCNA_00199 0.44 -0.3
213,226 + CCNA_00199 0.45 +0.0
213,226 + CCNA_00199 0.45 +0.3
213,231 + CCNA_00199 0.45 -0.0
213,231 - CCNA_00199 0.45 -0.6
213,234 - CCNA_00199 0.45 -0.2
213,239 - CCNA_00199 0.45 -0.7
213,249 - CCNA_00199 0.46 -0.2
213,259 - CCNA_00199 0.46 -0.1
213,303 - CCNA_00199 0.49 +0.7
213,313 - CCNA_00199 0.49 -1.2
213,313 - CCNA_00199 0.49 +1.0
213,313 - CCNA_00199 0.49 -1.2
213,313 - CCNA_00199 0.49 -0.6
213,322 - CCNA_00199 0.50 +1.5
213,399 + CCNA_00199 0.54 -0.3
213,404 + CCNA_00199 0.54 +0.6
213,404 + CCNA_00199 0.54 -0.8
213,407 - CCNA_00199 0.54 +1.1
213,407 - CCNA_00199 0.54 -0.2
213,418 + CCNA_00199 0.55 -0.3
213,427 + CCNA_00199 0.55 -0.4
213,438 + CCNA_00199 0.56 +1.7
213,478 - CCNA_00199 0.58 +0.4
213,494 + CCNA_00199 0.59 +0.1
213,494 + CCNA_00199 0.59 -0.6
213,502 - CCNA_00199 0.59 -0.8
213,502 - CCNA_00199 0.59 +0.5
213,502 - CCNA_00199 0.59 -0.7
213,502 - CCNA_00199 0.59 -0.7
213,527 - CCNA_00199 0.61 -1.3
213,529 - CCNA_00199 0.61 +0.2
213,536 + CCNA_00199 0.61 +0.0
213,565 - CCNA_00199 0.63 -0.6
213,575 + CCNA_00199 0.63 -0.2
213,577 - CCNA_00199 0.63 -1.4
213,586 + CCNA_00199 0.64 -0.0
213,594 - CCNA_00199 0.64 -0.9
213,594 - CCNA_00199 0.64 -0.8
213,631 + CCNA_00199 0.66 +0.5
213,631 + CCNA_00199 0.66 +0.4
213,631 + CCNA_00199 0.66 +0.0
213,631 + CCNA_00199 0.66 -0.8
213,631 + CCNA_00199 0.66 +0.6
213,631 + CCNA_00199 0.66 +0.7
213,631 + CCNA_00199 0.66 +0.0
213,631 + CCNA_00199 0.66 -0.5
213,631 + CCNA_00199 0.66 -0.2
213,631 + CCNA_00199 0.66 -0.4
213,639 - CCNA_00199 0.67 -0.7
213,639 - CCNA_00199 0.67 -0.3
213,639 - CCNA_00199 0.67 -0.5
213,639 - CCNA_00199 0.67 +0.3
213,639 - CCNA_00199 0.67 -0.5
213,639 - CCNA_00199 0.67 -0.2
213,639 - CCNA_00199 0.67 -0.9
213,640 - CCNA_00199 0.67 -0.7
213,659 + CCNA_00199 0.68 +0.2
213,660 - CCNA_00199 0.68 -0.4
213,667 - CCNA_00199 0.68 -0.6
213,667 - CCNA_00199 0.68 -0.6
213,689 + CCNA_00199 0.69 -0.8
213,689 + CCNA_00199 0.69 +0.7
213,691 + CCNA_00199 0.69 -0.2
213,711 + CCNA_00199 0.70 +0.5
213,733 + CCNA_00199 0.72 +0.1
213,733 + CCNA_00199 0.72 +1.7
213,733 + CCNA_00199 0.72 +0.1
213,741 - CCNA_00199 0.72 +0.1
213,762 - CCNA_00199 0.73 -0.7
213,808 - CCNA_00199 0.76 -0.5
213,814 + CCNA_00199 0.76 +0.3
213,815 + CCNA_00199 0.76 -0.3
213,819 + CCNA_00199 0.76 +0.2
213,821 + CCNA_00199 0.76 +0.2
213,823 - CCNA_00199 0.76 +0.6
213,866 + CCNA_00199 0.79 -0.3
213,879 - CCNA_00199 0.79 -0.5
213,892 + CCNA_00199 0.80 -0.2
213,893 + CCNA_00199 0.80 -0.2
213,960 - CCNA_00199 0.84 +1.7
213,968 - CCNA_00199 0.84 -0.3
213,979 - CCNA_00199 0.85 -0.3
213,994 + CCNA_00199 0.85 +0.1
214,041 + CCNA_00199 0.88 +0.1
214,041 + CCNA_00199 0.88 -0.6
214,071 - CCNA_00199 0.90 +0.9
214,098 - +0.9
214,107 - +0.4
214,121 + +0.2
214,139 - +0.5
214,200 + +0.1
214,205 + +0.1
214,228 - +0.1
214,240 - -0.3
214,240 - +0.2
214,242 + +0.6
214,250 - -0.5
214,318 + +1.3
214,326 - +0.6
214,355 - -0.7
214,367 - +0.7
214,367 - -0.5
214,384 - +1.1
214,413 + -0.5
214,416 - CCNA_00200 0.10 +0.2
214,421 - CCNA_00200 0.11 +0.2
214,423 + CCNA_00200 0.11 -0.6
214,423 + CCNA_00200 0.11 +0.9
214,423 + CCNA_00200 0.11 -0.3
214,423 + CCNA_00200 0.11 -0.2
214,463 + CCNA_00200 0.15 -0.1
214,466 - CCNA_00200 0.16 -0.4
214,468 + CCNA_00200 0.16 -0.5
214,481 - CCNA_00200 0.17 +0.1
214,481 - CCNA_00200 0.17 +0.3
214,491 - CCNA_00200 0.18 +0.3
214,501 + CCNA_00200 0.19 +0.1
214,515 + CCNA_00200 0.21 +0.5
214,520 - CCNA_00200 0.21 -1.4
214,522 + CCNA_00200 0.22 +0.2
214,523 - CCNA_00200 0.22 +0.8
214,623 + CCNA_00200 0.32 +0.4
214,631 + CCNA_00200 0.33 +0.5
214,631 - CCNA_00200 0.33 +0.7
214,666 - CCNA_00200 0.37 +0.0
214,698 - CCNA_00200 0.40 +0.3
214,799 - CCNA_00200 0.51 +0.1
214,818 + CCNA_00200 0.53 -0.8
214,851 + CCNA_00200 0.57 -0.0
214,860 - CCNA_00200 0.58 -0.2
214,980 + CCNA_00200 0.71 -0.0
214,988 - CCNA_00200 0.71 +0.1
215,037 + CCNA_00200 0.77 -0.2
215,037 + CCNA_00200 0.77 -0.3
215,037 + CCNA_00200 0.77 -1.2
215,046 - CCNA_00200 0.78 -0.6
215,091 - CCNA_00200 0.82 +0.8
215,100 + CCNA_00200 0.83 +0.3
215,100 + CCNA_00200 0.83 -0.7
215,100 + CCNA_00200 0.83 -0.3
215,108 - CCNA_00200 0.84 +0.2
215,108 - CCNA_00200 0.84 +0.6
215,127 + CCNA_00200 0.86 +0.5
215,165 - +0.0
215,165 - +1.2
215,184 - +0.2
215,186 + -0.8
215,205 - +1.5

Or see this region's nucleotide sequence