Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21530

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21525 and CA264_21530 are separated by 156 nucleotidesCA264_21530 and CA264_21535 are separated by 239 nucleotidesCA264_21535 and CA264_21540 overlap by 67 nucleotidesCA264_21540 and CA264_21545 are separated by 125 nucleotides CA264_21525: CA264_21525 - DUF305 domain-containing protein, at 175,607 to 176,320 _21525 CA264_21530: CA264_21530 - four-helix bundle copper-binding protein, at 176,477 to 176,794 _21530 CA264_21535: CA264_21535 - hypothetical protein, at 177,034 to 177,399 _21535 CA264_21540: CA264_21540 - hypothetical protein, at 177,333 to 177,509 _21540 CA264_21545: CA264_21545 - AraC family transcriptional regulator, at 177,635 to 177,823 _21545 Position (kb) 176 177Strain fitness (log2 ratio) -2 -1 0 1 2at 175.540 kb on - strandat 175.583 kb on + strandat 175.609 kb on - strandat 175.668 kb on - strandat 175.691 kb on + strand, within CA264_21525at 175.692 kb on - strand, within CA264_21525at 175.819 kb on + strand, within CA264_21525at 175.820 kb on - strand, within CA264_21525at 175.880 kb on - strand, within CA264_21525at 175.888 kb on + strand, within CA264_21525at 175.919 kb on - strand, within CA264_21525at 175.944 kb on - strand, within CA264_21525at 176.017 kb on - strand, within CA264_21525at 176.042 kb on + strand, within CA264_21525at 176.220 kb on - strand, within CA264_21525at 176.228 kb on - strand, within CA264_21525at 176.328 kb on - strandat 176.457 kb on + strandat 176.469 kb on + strandat 176.469 kb on + strandat 176.472 kb on - strandat 176.603 kb on + strand, within CA264_21530at 176.606 kb on + strand, within CA264_21530at 176.636 kb on + strand, within CA264_21530at 176.636 kb on + strand, within CA264_21530at 176.636 kb on + strand, within CA264_21530at 176.640 kb on + strand, within CA264_21530at 176.641 kb on - strand, within CA264_21530at 176.662 kb on + strand, within CA264_21530at 176.663 kb on - strand, within CA264_21530at 176.742 kb on + strand, within CA264_21530at 176.773 kb on + strandat 176.774 kb on - strandat 176.777 kb on + strandat 176.777 kb on + strandat 176.778 kb on - strandat 176.778 kb on - strandat 176.799 kb on - strandat 176.810 kb on - strandat 176.831 kb on - strandat 176.831 kb on - strandat 176.831 kb on - strandat 176.831 kb on - strandat 176.831 kb on - strandat 176.860 kb on - strandat 176.860 kb on - strandat 176.880 kb on + strandat 176.881 kb on - strandat 176.883 kb on + strandat 176.892 kb on + strandat 176.948 kb on + strandat 176.948 kb on + strandat 176.949 kb on - strandat 176.953 kb on + strandat 176.970 kb on - strandat 177.037 kb on + strandat 177.037 kb on + strandat 177.038 kb on - strandat 177.038 kb on - strandat 177.055 kb on + strandat 177.075 kb on + strand, within CA264_21535at 177.095 kb on + strand, within CA264_21535at 177.099 kb on + strand, within CA264_21535at 177.099 kb on + strand, within CA264_21535at 177.099 kb on + strand, within CA264_21535at 177.142 kb on - strand, within CA264_21535at 177.150 kb on - strand, within CA264_21535at 177.183 kb on + strand, within CA264_21535at 177.212 kb on + strand, within CA264_21535at 177.234 kb on + strand, within CA264_21535at 177.234 kb on + strand, within CA264_21535at 177.235 kb on - strand, within CA264_21535at 177.236 kb on + strand, within CA264_21535at 177.236 kb on + strand, within CA264_21535at 177.236 kb on + strand, within CA264_21535at 177.240 kb on + strand, within CA264_21535at 177.241 kb on - strand, within CA264_21535at 177.363 kb on + strandat 177.364 kb on - strandat 177.364 kb on - strandat 177.419 kb on + strand, within CA264_21540at 177.419 kb on + strand, within CA264_21540at 177.419 kb on + strand, within CA264_21540at 177.420 kb on - strand, within CA264_21540at 177.424 kb on + strand, within CA264_21540at 177.424 kb on + strand, within CA264_21540at 177.425 kb on - strand, within CA264_21540at 177.438 kb on - strand, within CA264_21540at 177.463 kb on + strand, within CA264_21540at 177.463 kb on + strand, within CA264_21540at 177.533 kb on + strandat 177.541 kb on - strandat 177.541 kb on - strandat 177.557 kb on + strandat 177.557 kb on + strandat 177.634 kb on + strandat 177.634 kb on + strandat 177.635 kb on - strandat 177.635 kb on - strandat 177.635 kb on - strandat 177.686 kb on - strand, within CA264_21545at 177.751 kb on + strand, within CA264_21545at 177.773 kb on + strand, within CA264_21545

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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175,540 - +0.6
175,583 + -0.2
175,609 - +0.2
175,668 - -0.7
175,691 + CA264_21525 0.12 +0.0
175,692 - CA264_21525 0.12 +0.3
175,819 + CA264_21525 0.30 +1.0
175,820 - CA264_21525 0.30 -0.2
175,880 - CA264_21525 0.38 +1.1
175,888 + CA264_21525 0.39 -0.4
175,919 - CA264_21525 0.44 -0.4
175,944 - CA264_21525 0.47 +0.1
176,017 - CA264_21525 0.57 +0.1
176,042 + CA264_21525 0.61 +0.2
176,220 - CA264_21525 0.86 -0.1
176,228 - CA264_21525 0.87 -0.0
176,328 - +0.0
176,457 + +0.5
176,469 + -1.4
176,469 + -0.1
176,472 - +1.6
176,603 + CA264_21530 0.40 +1.1
176,606 + CA264_21530 0.41 -1.9
176,636 + CA264_21530 0.50 -0.2
176,636 + CA264_21530 0.50 +0.4
176,636 + CA264_21530 0.50 -0.9
176,640 + CA264_21530 0.51 +1.2
176,641 - CA264_21530 0.52 -1.7
176,662 + CA264_21530 0.58 +0.1
176,663 - CA264_21530 0.58 -0.9
176,742 + CA264_21530 0.83 -0.0
176,773 + -0.2
176,774 - +0.3
176,777 + -0.6
176,777 + -0.1
176,778 - -0.5
176,778 - -1.0
176,799 - -0.6
176,810 - -1.3
176,831 - -0.3
176,831 - -0.2
176,831 - +0.4
176,831 - -0.9
176,831 - -0.1
176,860 - +1.1
176,860 - +1.2
176,880 + +0.4
176,881 - -0.2
176,883 + -0.2
176,892 + +0.3
176,948 + -0.6
176,948 + -1.6
176,949 - -0.8
176,953 + -0.1
176,970 - -0.4
177,037 + +0.3
177,037 + -0.7
177,038 - +0.4
177,038 - -0.8
177,055 + +0.6
177,075 + CA264_21535 0.11 -0.4
177,095 + CA264_21535 0.17 -0.4
177,099 + CA264_21535 0.18 +0.4
177,099 + CA264_21535 0.18 +0.1
177,099 + CA264_21535 0.18 -1.4
177,142 - CA264_21535 0.30 +0.7
177,150 - CA264_21535 0.32 -1.4
177,183 + CA264_21535 0.41 -0.2
177,212 + CA264_21535 0.49 -0.0
177,234 + CA264_21535 0.55 -0.3
177,234 + CA264_21535 0.55 -0.5
177,235 - CA264_21535 0.55 -1.6
177,236 + CA264_21535 0.55 -0.5
177,236 + CA264_21535 0.55 +0.4
177,236 + CA264_21535 0.55 -0.1
177,240 + CA264_21535 0.56 -1.6
177,241 - CA264_21535 0.57 -1.0
177,363 + -0.0
177,364 - +0.0
177,364 - -0.2
177,419 + CA264_21540 0.49 -0.1
177,419 + CA264_21540 0.49 +0.1
177,419 + CA264_21540 0.49 +0.2
177,420 - CA264_21540 0.49 -0.2
177,424 + CA264_21540 0.51 -0.3
177,424 + CA264_21540 0.51 -0.2
177,425 - CA264_21540 0.52 -0.3
177,438 - CA264_21540 0.59 -0.0
177,463 + CA264_21540 0.73 -0.2
177,463 + CA264_21540 0.73 -2.7
177,533 + -1.5
177,541 - -0.4
177,541 - -0.3
177,557 + -0.6
177,557 + +0.2
177,634 + +1.4
177,634 + -0.8
177,635 - +2.0
177,635 - +0.9
177,635 - +0.2
177,686 - CA264_21545 0.27 +0.1
177,751 + CA264_21545 0.61 -0.6
177,773 + CA264_21545 0.73 -1.0

Or see this region's nucleotide sequence