Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19220

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19210 and CA264_19215 are separated by 308 nucleotidesCA264_19215 and CA264_19220 are separated by 27 nucleotidesCA264_19220 and CA264_19225 are separated by 6 nucleotidesCA264_19225 and CA264_19230 overlap by 4 nucleotides CA264_19210: CA264_19210 - SAM-dependent methyltransferase, at 4,463,357 to 4,464,097 _19210 CA264_19215: CA264_19215 - RNA polymerase subunit sigma, at 4,464,406 to 4,464,999 _19215 CA264_19220: CA264_19220 - hypothetical protein, at 4,465,027 to 4,465,308 _19220 CA264_19225: CA264_19225 - guanylate kinase, at 4,465,315 to 4,465,899 _19225 CA264_19230: CA264_19230 - nicotinate-nicotinamide nucleotide adenylyltransferase, at 4,465,896 to 4,466,468 _19230 Position (kb) 4465 4466Strain fitness (log2 ratio) -1 0 1 2at 4464.030 kb on - strandat 4464.064 kb on + strandat 4464.064 kb on + strandat 4464.141 kb on + strandat 4464.141 kb on + strandat 4464.142 kb on - strandat 4464.145 kb on + strandat 4464.146 kb on - strandat 4464.146 kb on - strandat 4464.146 kb on - strandat 4464.172 kb on - strandat 4464.175 kb on + strandat 4464.186 kb on - strandat 4464.186 kb on - strandat 4464.233 kb on - strandat 4464.236 kb on + strandat 4464.270 kb on - strandat 4464.270 kb on - strandat 4464.271 kb on + strandat 4464.279 kb on + strandat 4464.338 kb on - strandat 4464.347 kb on - strandat 4464.360 kb on - strandat 4464.398 kb on + strandat 4464.399 kb on - strandat 4464.433 kb on - strandat 4464.436 kb on - strandat 4464.494 kb on - strand, within CA264_19215at 4464.505 kb on + strand, within CA264_19215at 4464.519 kb on - strand, within CA264_19215at 4464.545 kb on + strand, within CA264_19215at 4464.556 kb on + strand, within CA264_19215at 4464.556 kb on + strand, within CA264_19215at 4464.557 kb on - strand, within CA264_19215at 4464.569 kb on - strand, within CA264_19215at 4464.600 kb on + strand, within CA264_19215at 4464.710 kb on - strand, within CA264_19215at 4464.710 kb on - strand, within CA264_19215at 4464.834 kb on + strand, within CA264_19215at 4464.846 kb on + strand, within CA264_19215at 4464.908 kb on + strand, within CA264_19215at 4464.918 kb on - strand, within CA264_19215at 4464.975 kb on + strandat 4464.976 kb on - strandat 4464.991 kb on - strandat 4465.023 kb on + strandat 4465.049 kb on + strandat 4465.097 kb on + strand, within CA264_19220at 4465.109 kb on + strand, within CA264_19220at 4465.110 kb on - strand, within CA264_19220at 4465.167 kb on + strand, within CA264_19220at 4465.264 kb on - strand, within CA264_19220at 4465.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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4,464,030 - -1.1
4,464,064 + -0.5
4,464,064 + -0.4
4,464,141 + +0.8
4,464,141 + +0.8
4,464,142 - +0.2
4,464,145 + +0.9
4,464,146 - +0.7
4,464,146 - +1.0
4,464,146 - +1.0
4,464,172 - +1.4
4,464,175 + +1.4
4,464,186 - +1.2
4,464,186 - +1.2
4,464,233 - +0.8
4,464,236 + +0.9
4,464,270 - +1.0
4,464,270 - +1.0
4,464,271 + +1.1
4,464,279 + +1.2
4,464,338 - +0.5
4,464,347 - +1.2
4,464,360 - +1.4
4,464,398 + -0.1
4,464,399 - +1.6
4,464,433 - +1.4
4,464,436 - +0.8
4,464,494 - CA264_19215 0.15 +0.9
4,464,505 + CA264_19215 0.17 +1.0
4,464,519 - CA264_19215 0.19 +1.2
4,464,545 + CA264_19215 0.23 +1.4
4,464,556 + CA264_19215 0.25 +1.0
4,464,556 + CA264_19215 0.25 +1.2
4,464,557 - CA264_19215 0.25 +1.9
4,464,569 - CA264_19215 0.27 +2.0
4,464,600 + CA264_19215 0.33 +2.7
4,464,710 - CA264_19215 0.51 +0.2
4,464,710 - CA264_19215 0.51 +1.0
4,464,834 + CA264_19215 0.72 -1.2
4,464,846 + CA264_19215 0.74 +0.6
4,464,908 + CA264_19215 0.85 +0.1
4,464,918 - CA264_19215 0.86 +1.9
4,464,975 + +0.2
4,464,976 - +0.7
4,464,991 - -0.8
4,465,023 + +0.2
4,465,049 + -0.5
4,465,097 + CA264_19220 0.25 +0.3
4,465,109 + CA264_19220 0.29 -0.3
4,465,110 - CA264_19220 0.29 +0.6
4,465,167 + CA264_19220 0.50 +0.7
4,465,264 - CA264_19220 0.84 +1.7
4,465,305 - +0.7

Or see this region's nucleotide sequence