Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17750

Experiment: m.b. perchlorate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_17740 and CA264_17745 are separated by 91 nucleotidesCA264_17745 and CA264_17750 are separated by 12 nucleotidesCA264_17750 and CA264_17755 are separated by 147 nucleotides CA264_17740: CA264_17740 - AraC family transcriptional regulator, at 4,128,615 to 4,129,133 _17740 CA264_17745: CA264_17745 - TetR family transcriptional regulator, at 4,129,225 to 4,129,836 _17745 CA264_17750: CA264_17750 - hypothetical protein, at 4,129,849 to 4,130,259 _17750 CA264_17755: CA264_17755 - ABC transporter, at 4,130,407 to 4,132,191 _17755 Position (kb) 4129 4130 4131Strain fitness (log2 ratio) -2 -1 0 1 2at 4128.849 kb on + strand, within CA264_17740at 4128.921 kb on - strand, within CA264_17740at 4129.021 kb on - strand, within CA264_17740at 4129.021 kb on - strand, within CA264_17740at 4129.021 kb on - strand, within CA264_17740at 4129.074 kb on + strand, within CA264_17740at 4129.074 kb on + strand, within CA264_17740at 4129.078 kb on + strand, within CA264_17740at 4129.078 kb on + strand, within CA264_17740at 4129.079 kb on - strand, within CA264_17740at 4129.138 kb on + strandat 4129.139 kb on - strandat 4129.156 kb on - strandat 4129.158 kb on + strandat 4129.158 kb on + strandat 4129.158 kb on + strandat 4129.158 kb on + strandat 4129.158 kb on + strandat 4129.159 kb on - strandat 4129.159 kb on - strandat 4129.159 kb on - strandat 4129.159 kb on - strandat 4129.162 kb on - strandat 4129.162 kb on - strandat 4129.164 kb on - strandat 4129.212 kb on + strandat 4129.212 kb on + strandat 4129.213 kb on - strandat 4129.213 kb on - strandat 4129.216 kb on + strandat 4129.217 kb on - strandat 4129.217 kb on - strandat 4129.293 kb on - strand, within CA264_17745at 4129.357 kb on + strand, within CA264_17745at 4129.360 kb on + strand, within CA264_17745at 4129.360 kb on + strand, within CA264_17745at 4129.361 kb on - strand, within CA264_17745at 4129.366 kb on + strand, within CA264_17745at 4129.484 kb on - strand, within CA264_17745at 4129.505 kb on - strand, within CA264_17745at 4129.613 kb on - strand, within CA264_17745at 4129.792 kb on + strandat 4129.793 kb on - strandat 4129.850 kb on + strandat 4129.850 kb on + strandat 4129.851 kb on - strandat 4129.865 kb on + strandat 4129.865 kb on + strandat 4129.865 kb on + strandat 4129.865 kb on + strandat 4129.874 kb on - strandat 4129.894 kb on + strand, within CA264_17750at 4129.895 kb on - strand, within CA264_17750at 4129.967 kb on + strand, within CA264_17750at 4130.059 kb on + strand, within CA264_17750at 4130.061 kb on + strand, within CA264_17750at 4130.062 kb on - strand, within CA264_17750at 4130.062 kb on - strand, within CA264_17750at 4130.062 kb on - strand, within CA264_17750at 4130.237 kb on - strandat 4130.237 kb on - strandat 4130.283 kb on + strandat 4130.283 kb on + strandat 4130.284 kb on - strandat 4130.291 kb on - strandat 4130.304 kb on + strandat 4130.308 kb on + strandat 4130.309 kb on - strandat 4130.362 kb on + strandat 4130.363 kb on - strandat 4130.469 kb on + strandat 4130.565 kb on + strandat 4130.566 kb on - strandat 4130.730 kb on + strand, within CA264_17755at 4130.731 kb on - strand, within CA264_17755at 4130.790 kb on - strand, within CA264_17755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
remove
4,128,849 + CA264_17740 0.45 -0.4
4,128,921 - CA264_17740 0.59 +1.8
4,129,021 - CA264_17740 0.78 -0.8
4,129,021 - CA264_17740 0.78 +1.0
4,129,021 - CA264_17740 0.78 +0.1
4,129,074 + CA264_17740 0.88 +0.4
4,129,074 + CA264_17740 0.88 +0.2
4,129,078 + CA264_17740 0.89 +0.1
4,129,078 + CA264_17740 0.89 -0.7
4,129,079 - CA264_17740 0.89 +1.2
4,129,138 + -0.5
4,129,139 - -0.6
4,129,156 - +0.6
4,129,158 + -1.1
4,129,158 + +1.2
4,129,158 + +0.2
4,129,158 + +1.4
4,129,158 + +0.5
4,129,159 - +0.2
4,129,159 - -0.2
4,129,159 - -1.1
4,129,159 - +1.9
4,129,162 - -0.2
4,129,162 - -0.1
4,129,164 - +0.4
4,129,212 + -0.2
4,129,212 + -0.5
4,129,213 - -0.0
4,129,213 - +0.4
4,129,216 + -0.0
4,129,217 - -0.5
4,129,217 - -0.0
4,129,293 - CA264_17745 0.11 -0.5
4,129,357 + CA264_17745 0.22 +0.0
4,129,360 + CA264_17745 0.22 -0.3
4,129,360 + CA264_17745 0.22 -0.4
4,129,361 - CA264_17745 0.22 -0.1
4,129,366 + CA264_17745 0.23 +1.2
4,129,484 - CA264_17745 0.42 -0.8
4,129,505 - CA264_17745 0.46 -0.0
4,129,613 - CA264_17745 0.63 +0.2
4,129,792 + +0.1
4,129,793 - -0.5
4,129,850 + +0.3
4,129,850 + +0.6
4,129,851 - +0.3
4,129,865 + -0.6
4,129,865 + +1.1
4,129,865 + +0.6
4,129,865 + +0.6
4,129,874 - -0.6
4,129,894 + CA264_17750 0.11 -0.3
4,129,895 - CA264_17750 0.11 -1.3
4,129,967 + CA264_17750 0.29 +0.3
4,130,059 + CA264_17750 0.51 +0.3
4,130,061 + CA264_17750 0.52 -0.7
4,130,062 - CA264_17750 0.52 +0.4
4,130,062 - CA264_17750 0.52 -1.9
4,130,062 - CA264_17750 0.52 -1.4
4,130,237 - +0.1
4,130,237 - +0.0
4,130,283 + +0.2
4,130,283 + +1.0
4,130,284 - -1.5
4,130,291 - -0.3
4,130,304 + -0.5
4,130,308 + +0.2
4,130,309 - +0.0
4,130,362 + +0.6
4,130,363 - -0.1
4,130,469 + -0.1
4,130,565 + -0.2
4,130,566 - -0.8
4,130,730 + CA264_17755 0.18 +2.0
4,130,731 - CA264_17755 0.18 -2.3
4,130,790 - CA264_17755 0.21 +0.5

Or see this region's nucleotide sequence