Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13220

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13210 and CA264_13215 are separated by 153 nucleotidesCA264_13215 and CA264_13220 are separated by 183 nucleotidesCA264_13220 and CA264_13225 are separated by 31 nucleotidesCA264_13225 and CA264_13230 are separated by 115 nucleotides CA264_13210: CA264_13210 - hypothetical protein, at 3,080,763 to 3,081,101 _13210 CA264_13215: CA264_13215 - hypothetical protein, at 3,081,255 to 3,081,674 _13215 CA264_13220: CA264_13220 - kazal domain protein, at 3,081,858 to 3,082,094 _13220 CA264_13225: CA264_13225 - cupin, at 3,082,126 to 3,082,497 _13225 CA264_13230: CA264_13230 - enoyl-ACP reductase, at 3,082,613 to 3,083,425 _13230 Position (kb) 3081 3082 3083Strain fitness (log2 ratio) -2 -1 0 1at 3080.964 kb on - strand, within CA264_13210at 3080.973 kb on - strand, within CA264_13210at 3081.015 kb on - strand, within CA264_13210at 3081.079 kb on - strandat 3081.090 kb on - strandat 3081.137 kb on + strandat 3081.138 kb on - strandat 3081.157 kb on - strandat 3081.169 kb on - strandat 3081.169 kb on - strandat 3081.173 kb on + strandat 3081.174 kb on - strandat 3081.176 kb on - strandat 3081.179 kb on + strandat 3081.180 kb on - strandat 3081.180 kb on - strandat 3081.181 kb on + strandat 3081.182 kb on - strandat 3081.189 kb on - strandat 3081.207 kb on - strandat 3081.217 kb on + strandat 3081.331 kb on + strand, within CA264_13215at 3081.332 kb on - strand, within CA264_13215at 3081.332 kb on - strand, within CA264_13215at 3081.358 kb on + strand, within CA264_13215at 3081.364 kb on - strand, within CA264_13215at 3081.388 kb on + strand, within CA264_13215at 3081.388 kb on + strand, within CA264_13215at 3081.628 kb on - strand, within CA264_13215at 3081.674 kb on + strandat 3081.675 kb on - strandat 3081.703 kb on + strandat 3081.782 kb on + strandat 3081.782 kb on + strandat 3081.782 kb on + strandat 3081.817 kb on + strandat 3081.817 kb on + strandat 3081.821 kb on + strandat 3081.822 kb on - strandat 3081.839 kb on - strandat 3081.839 kb on - strandat 3081.842 kb on + strandat 3081.843 kb on - strandat 3081.852 kb on + strandat 3081.853 kb on - strandat 3081.853 kb on - strandat 3081.855 kb on - strandat 3081.988 kb on - strand, within CA264_13220at 3082.020 kb on + strand, within CA264_13220at 3082.055 kb on + strand, within CA264_13220at 3082.065 kb on - strand, within CA264_13220at 3082.111 kb on + strandat 3082.125 kb on + strandat 3082.193 kb on + strand, within CA264_13225at 3082.379 kb on + strand, within CA264_13225at 3082.379 kb on + strand, within CA264_13225at 3082.380 kb on - strand, within CA264_13225at 3082.380 kb on - strand, within CA264_13225at 3082.383 kb on + strand, within CA264_13225at 3082.384 kb on - strand, within CA264_13225at 3082.438 kb on + strand, within CA264_13225at 3082.438 kb on + strand, within CA264_13225at 3082.447 kb on - strand, within CA264_13225at 3082.550 kb on - strandat 3082.615 kb on - strandat 3082.615 kb on - strandat 3082.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,080,964 - CA264_13210 0.59 +0.6
3,080,973 - CA264_13210 0.62 +0.9
3,081,015 - CA264_13210 0.74 -0.4
3,081,079 - -0.6
3,081,090 - -0.6
3,081,137 + +0.1
3,081,138 - -0.4
3,081,157 - +0.1
3,081,169 - -1.2
3,081,169 - +0.8
3,081,173 + +0.1
3,081,174 - +0.1
3,081,176 - +1.3
3,081,179 + +0.0
3,081,180 - -2.1
3,081,180 - -0.8
3,081,181 + +1.3
3,081,182 - +0.1
3,081,189 - -0.3
3,081,207 - +1.2
3,081,217 + +1.5
3,081,331 + CA264_13215 0.18 -0.9
3,081,332 - CA264_13215 0.18 -0.6
3,081,332 - CA264_13215 0.18 +0.3
3,081,358 + CA264_13215 0.25 -0.2
3,081,364 - CA264_13215 0.26 -1.3
3,081,388 + CA264_13215 0.32 +0.1
3,081,388 + CA264_13215 0.32 +0.8
3,081,628 - CA264_13215 0.89 -0.5
3,081,674 + -1.7
3,081,675 - +0.3
3,081,703 + +0.5
3,081,782 + +0.1
3,081,782 + -0.0
3,081,782 + -0.3
3,081,817 + -0.7
3,081,817 + +1.5
3,081,821 + -0.2
3,081,822 - -1.2
3,081,839 - +0.6
3,081,839 - -0.2
3,081,842 + +1.3
3,081,843 - -1.5
3,081,852 + -0.4
3,081,853 - +0.0
3,081,853 - +0.3
3,081,855 - -0.0
3,081,988 - CA264_13220 0.55 +0.1
3,082,020 + CA264_13220 0.68 +0.5
3,082,055 + CA264_13220 0.83 +1.1
3,082,065 - CA264_13220 0.87 -0.2
3,082,111 + +0.5
3,082,125 + +0.2
3,082,193 + CA264_13225 0.18 +0.8
3,082,379 + CA264_13225 0.68 +0.1
3,082,379 + CA264_13225 0.68 -0.0
3,082,380 - CA264_13225 0.68 -0.4
3,082,380 - CA264_13225 0.68 +1.3
3,082,383 + CA264_13225 0.69 +0.3
3,082,384 - CA264_13225 0.69 -0.7
3,082,438 + CA264_13225 0.84 +0.8
3,082,438 + CA264_13225 0.84 -0.5
3,082,447 - CA264_13225 0.86 +0.8
3,082,550 - -0.1
3,082,615 - -0.4
3,082,615 - +0.9
3,082,619 - -0.6

Or see this region's nucleotide sequence