Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12860

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12845 and CA264_12850 are separated by 105 nucleotidesCA264_12850 and CA264_12855 are separated by 170 nucleotidesCA264_12855 and CA264_12860 overlap by 1 nucleotidesCA264_12860 and CA264_12865 are separated by 10 nucleotides CA264_12845: CA264_12845 - FAD-dependent oxidoreductase, at 2,994,391 to 2,995,536 _12845 CA264_12850: CA264_12850 - hypothetical protein, at 2,995,642 to 2,995,854 _12850 CA264_12855: CA264_12855 - hypothetical protein, at 2,996,025 to 2,996,267 _12855 CA264_12860: CA264_12860 - hypothetical protein, at 2,996,267 to 2,996,773 _12860 CA264_12865: CA264_12865 - Zn-dependent hydrolase, at 2,996,784 to 2,998,445 _12865 Position (kb) 2996 2997Strain fitness (log2 ratio) -1 0 1 2at 2995.341 kb on - strand, within CA264_12845at 2995.364 kb on + strand, within CA264_12845at 2995.387 kb on - strand, within CA264_12845at 2995.470 kb on + strandat 2995.532 kb on + strandat 2995.532 kb on + strandat 2995.532 kb on + strandat 2995.533 kb on - strandat 2995.534 kb on + strandat 2995.534 kb on + strandat 2995.534 kb on + strandat 2995.534 kb on + strandat 2995.534 kb on + strandat 2995.535 kb on - strandat 2995.535 kb on - strandat 2995.535 kb on - strandat 2995.535 kb on - strandat 2995.535 kb on - strandat 2995.562 kb on - strandat 2995.562 kb on - strandat 2995.568 kb on + strandat 2995.568 kb on + strandat 2995.568 kb on + strandat 2995.568 kb on + strandat 2995.569 kb on - strandat 2995.569 kb on - strandat 2995.620 kb on + strandat 2995.620 kb on + strandat 2995.643 kb on + strandat 2995.644 kb on - strandat 2995.722 kb on - strand, within CA264_12850at 2995.722 kb on - strand, within CA264_12850at 2995.733 kb on + strand, within CA264_12850at 2995.733 kb on + strand, within CA264_12850at 2995.734 kb on - strand, within CA264_12850at 2995.772 kb on + strand, within CA264_12850at 2995.773 kb on - strand, within CA264_12850at 2995.774 kb on + strand, within CA264_12850at 2995.841 kb on + strandat 2995.903 kb on - strandat 2995.907 kb on + strandat 2996.010 kb on + strandat 2996.011 kb on - strandat 2996.024 kb on - strandat 2996.042 kb on + strandat 2996.042 kb on + strandat 2996.042 kb on + strandat 2996.043 kb on - strandat 2996.049 kb on + strandat 2996.049 kb on + strandat 2996.050 kb on - strand, within CA264_12855at 2996.055 kb on - strand, within CA264_12855at 2996.205 kb on + strand, within CA264_12855at 2996.206 kb on - strand, within CA264_12855at 2996.269 kb on - strandat 2996.538 kb on + strand, within CA264_12860at 2996.539 kb on - strand, within CA264_12860at 2996.562 kb on - strand, within CA264_12860at 2996.634 kb on + strand, within CA264_12860at 2996.634 kb on + strand, within CA264_12860at 2996.634 kb on + strand, within CA264_12860at 2996.727 kb on + strandat 2996.727 kb on + strandat 2996.728 kb on - strandat 2996.728 kb on - strandat 2996.803 kb on - strandat 2996.803 kb on - strandat 2996.803 kb on - strandat 2996.823 kb on + strandat 2996.823 kb on + strandat 2997.142 kb on + strand, within CA264_12865at 2997.142 kb on + strand, within CA264_12865at 2997.142 kb on + strand, within CA264_12865at 2997.142 kb on + strand, within CA264_12865at 2997.142 kb on + strand, within CA264_12865at 2997.142 kb on + strand, within CA264_12865at 2997.143 kb on - strand, within CA264_12865at 2997.143 kb on - strand, within CA264_12865at 2997.143 kb on - strand, within CA264_12865at 2997.199 kb on + strand, within CA264_12865at 2997.200 kb on - strand, within CA264_12865at 2997.200 kb on - strand, within CA264_12865at 2997.354 kb on + strand, within CA264_12865at 2997.355 kb on - strand, within CA264_12865at 2997.358 kb on + strand, within CA264_12865at 2997.359 kb on - strand, within CA264_12865at 2997.465 kb on + strand, within CA264_12865at 2997.466 kb on - strand, within CA264_12865at 2997.538 kb on + strand, within CA264_12865at 2997.590 kb on + strand, within CA264_12865at 2997.689 kb on - strand, within CA264_12865at 2997.730 kb on + strand, within CA264_12865at 2997.750 kb on - strand, within CA264_12865

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,995,341 - CA264_12845 0.83 -0.6
2,995,364 + CA264_12845 0.85 -0.6
2,995,387 - CA264_12845 0.87 +1.5
2,995,470 + -0.1
2,995,532 + -0.7
2,995,532 + +0.9
2,995,532 + -0.7
2,995,533 - +0.2
2,995,534 + +0.1
2,995,534 + -0.4
2,995,534 + +0.2
2,995,534 + +0.3
2,995,534 + -0.1
2,995,535 - -0.8
2,995,535 - +0.4
2,995,535 - -0.1
2,995,535 - -1.6
2,995,535 - -0.1
2,995,562 - -0.8
2,995,562 - +0.9
2,995,568 + -0.3
2,995,568 + -0.7
2,995,568 + -0.1
2,995,568 + -0.7
2,995,569 - +0.2
2,995,569 - -0.3
2,995,620 + -0.0
2,995,620 + -0.2
2,995,643 + +0.4
2,995,644 - -1.1
2,995,722 - CA264_12850 0.38 +0.0
2,995,722 - CA264_12850 0.38 +0.9
2,995,733 + CA264_12850 0.43 +0.2
2,995,733 + CA264_12850 0.43 +0.4
2,995,734 - CA264_12850 0.43 +0.0
2,995,772 + CA264_12850 0.61 -0.2
2,995,773 - CA264_12850 0.62 +0.7
2,995,774 + CA264_12850 0.62 +0.6
2,995,841 + -0.4
2,995,903 - -0.1
2,995,907 + +0.5
2,996,010 + +0.5
2,996,011 - -0.7
2,996,024 - +0.9
2,996,042 + +0.9
2,996,042 + +0.0
2,996,042 + -0.6
2,996,043 - -0.2
2,996,049 + +0.6
2,996,049 + +1.4
2,996,050 - CA264_12855 0.10 +1.3
2,996,055 - CA264_12855 0.12 -0.8
2,996,205 + CA264_12855 0.74 +0.8
2,996,206 - CA264_12855 0.74 -0.1
2,996,269 - -0.2
2,996,538 + CA264_12860 0.53 -0.0
2,996,539 - CA264_12860 0.54 +0.3
2,996,562 - CA264_12860 0.58 +1.8
2,996,634 + CA264_12860 0.72 +0.4
2,996,634 + CA264_12860 0.72 -1.3
2,996,634 + CA264_12860 0.72 -1.2
2,996,727 + -0.1
2,996,727 + +0.1
2,996,728 - -0.5
2,996,728 - +0.2
2,996,803 - +0.0
2,996,803 - -1.1
2,996,803 - +0.2
2,996,823 + -0.0
2,996,823 + +0.4
2,997,142 + CA264_12865 0.22 +0.2
2,997,142 + CA264_12865 0.22 -0.7
2,997,142 + CA264_12865 0.22 -1.1
2,997,142 + CA264_12865 0.22 +0.6
2,997,142 + CA264_12865 0.22 +0.5
2,997,142 + CA264_12865 0.22 -0.1
2,997,143 - CA264_12865 0.22 +1.7
2,997,143 - CA264_12865 0.22 -0.4
2,997,143 - CA264_12865 0.22 -0.1
2,997,199 + CA264_12865 0.25 +0.5
2,997,200 - CA264_12865 0.25 -0.7
2,997,200 - CA264_12865 0.25 -0.4
2,997,354 + CA264_12865 0.34 +0.4
2,997,355 - CA264_12865 0.34 +0.5
2,997,358 + CA264_12865 0.35 +0.7
2,997,359 - CA264_12865 0.35 -0.8
2,997,465 + CA264_12865 0.41 +0.3
2,997,466 - CA264_12865 0.41 +0.5
2,997,538 + CA264_12865 0.45 +1.6
2,997,590 + CA264_12865 0.48 +0.2
2,997,689 - CA264_12865 0.54 +1.6
2,997,730 + CA264_12865 0.57 +0.1
2,997,750 - CA264_12865 0.58 +0.2

Or see this region's nucleotide sequence