Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07855

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07845 and CA264_07850 are separated by 95 nucleotidesCA264_07850 and CA264_07855 are separated by 133 nucleotidesCA264_07855 and CA264_07860 are separated by 87 nucleotides CA264_07845: CA264_07845 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 1,817,450 to 1,818,466 _07845 CA264_07850: CA264_07850 - hypothetical protein, at 1,818,562 to 1,819,068 _07850 CA264_07855: CA264_07855 - ribonuclease BN, at 1,819,202 to 1,820,110 _07855 CA264_07860: CA264_07860 - SAM-dependent methyltransferase, at 1,820,198 to 1,820,911 _07860 Position (kb) 1819 1820 1821Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1818.464 kb on + strandat 1818.464 kb on + strandat 1818.530 kb on + strandat 1818.533 kb on - strandat 1818.540 kb on - strandat 1818.542 kb on - strandat 1818.542 kb on - strandat 1818.553 kb on - strandat 1818.578 kb on - strandat 1818.578 kb on - strandat 1818.587 kb on - strandat 1818.621 kb on - strand, within CA264_07850at 1818.652 kb on - strand, within CA264_07850at 1818.705 kb on + strand, within CA264_07850at 1818.803 kb on - strand, within CA264_07850at 1818.803 kb on - strand, within CA264_07850at 1818.803 kb on - strand, within CA264_07850at 1819.066 kb on + strandat 1819.089 kb on - strandat 1819.091 kb on - strandat 1819.136 kb on + strandat 1819.137 kb on - strandat 1819.189 kb on + strandat 1819.189 kb on + strandat 1819.190 kb on - strandat 1819.190 kb on - strandat 1819.199 kb on - strandat 1819.232 kb on + strandat 1819.295 kb on - strand, within CA264_07855at 1819.319 kb on - strand, within CA264_07855at 1819.321 kb on + strand, within CA264_07855at 1819.322 kb on - strand, within CA264_07855at 1819.329 kb on + strand, within CA264_07855at 1819.329 kb on + strand, within CA264_07855at 1819.330 kb on - strand, within CA264_07855at 1819.330 kb on - strand, within CA264_07855at 1819.330 kb on - strand, within CA264_07855at 1819.330 kb on - strand, within CA264_07855at 1819.332 kb on + strand, within CA264_07855at 1819.333 kb on - strand, within CA264_07855at 1819.374 kb on + strand, within CA264_07855at 1819.374 kb on + strand, within CA264_07855at 1819.374 kb on + strand, within CA264_07855at 1819.375 kb on - strand, within CA264_07855at 1819.405 kb on - strand, within CA264_07855at 1819.405 kb on - strand, within CA264_07855at 1819.419 kb on + strand, within CA264_07855at 1819.419 kb on + strand, within CA264_07855at 1819.573 kb on - strand, within CA264_07855at 1819.713 kb on - strand, within CA264_07855at 1819.817 kb on + strand, within CA264_07855at 1819.817 kb on + strand, within CA264_07855at 1819.818 kb on - strand, within CA264_07855at 1819.898 kb on + strand, within CA264_07855at 1819.898 kb on + strand, within CA264_07855at 1819.899 kb on - strand, within CA264_07855at 1819.899 kb on - strand, within CA264_07855at 1820.031 kb on + strandat 1820.032 kb on - strandat 1820.063 kb on - strandat 1820.152 kb on - strandat 1820.153 kb on + strandat 1820.161 kb on - strandat 1820.166 kb on + strandat 1820.189 kb on - strandat 1820.281 kb on - strand, within CA264_07860at 1820.343 kb on + strand, within CA264_07860at 1820.344 kb on - strand, within CA264_07860at 1820.344 kb on - strand, within CA264_07860at 1820.353 kb on + strand, within CA264_07860at 1820.354 kb on - strand, within CA264_07860at 1820.354 kb on - strand, within CA264_07860at 1820.356 kb on - strand, within CA264_07860at 1820.418 kb on + strand, within CA264_07860at 1820.419 kb on - strand, within CA264_07860at 1820.424 kb on + strand, within CA264_07860at 1820.424 kb on + strand, within CA264_07860at 1820.424 kb on + strand, within CA264_07860at 1820.424 kb on + strand, within CA264_07860at 1820.424 kb on + strand, within CA264_07860at 1820.425 kb on - strand, within CA264_07860at 1820.429 kb on + strand, within CA264_07860at 1820.429 kb on + strand, within CA264_07860at 1820.429 kb on + strand, within CA264_07860at 1820.430 kb on - strand, within CA264_07860at 1820.554 kb on + strand, within CA264_07860at 1820.714 kb on + strand, within CA264_07860at 1820.908 kb on - strandat 1820.966 kb on + strandat 1820.970 kb on + strandat 1820.970 kb on + strandat 1820.970 kb on + strandat 1820.972 kb on + strandat 1820.973 kb on - strandat 1821.004 kb on - strandat 1821.040 kb on - strandat 1821.048 kb on + strandat 1821.053 kb on + strandat 1821.053 kb on + strandat 1821.054 kb on - strandat 1821.055 kb on + strandat 1821.057 kb on + strandat 1821.078 kb on + strandat 1821.082 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,818,464 + -0.4
1,818,464 + +0.5
1,818,530 + -0.9
1,818,533 - -0.8
1,818,540 - +2.1
1,818,542 - +0.2
1,818,542 - +0.3
1,818,553 - +0.4
1,818,578 - +0.0
1,818,578 - -0.9
1,818,587 - +0.4
1,818,621 - CA264_07850 0.12 -0.4
1,818,652 - CA264_07850 0.18 +0.8
1,818,705 + CA264_07850 0.28 +0.0
1,818,803 - CA264_07850 0.48 -1.2
1,818,803 - CA264_07850 0.48 -0.3
1,818,803 - CA264_07850 0.48 +0.7
1,819,066 + -0.7
1,819,089 - -0.9
1,819,091 - +0.2
1,819,136 + +0.5
1,819,137 - +0.6
1,819,189 + -0.3
1,819,189 + -0.0
1,819,190 - -0.2
1,819,190 - -0.4
1,819,199 - -0.4
1,819,232 + -1.7
1,819,295 - CA264_07855 0.10 +0.4
1,819,319 - CA264_07855 0.13 -0.2
1,819,321 + CA264_07855 0.13 -0.4
1,819,322 - CA264_07855 0.13 -0.7
1,819,329 + CA264_07855 0.14 -2.0
1,819,329 + CA264_07855 0.14 -0.0
1,819,330 - CA264_07855 0.14 -1.3
1,819,330 - CA264_07855 0.14 +0.1
1,819,330 - CA264_07855 0.14 -0.8
1,819,330 - CA264_07855 0.14 +1.2
1,819,332 + CA264_07855 0.14 -0.2
1,819,333 - CA264_07855 0.14 +0.6
1,819,374 + CA264_07855 0.19 -1.2
1,819,374 + CA264_07855 0.19 -0.2
1,819,374 + CA264_07855 0.19 -1.4
1,819,375 - CA264_07855 0.19 -0.2
1,819,405 - CA264_07855 0.22 -0.8
1,819,405 - CA264_07855 0.22 +0.8
1,819,419 + CA264_07855 0.24 -1.1
1,819,419 + CA264_07855 0.24 +3.0
1,819,573 - CA264_07855 0.41 +0.2
1,819,713 - CA264_07855 0.56 -0.6
1,819,817 + CA264_07855 0.68 -0.7
1,819,817 + CA264_07855 0.68 -0.3
1,819,818 - CA264_07855 0.68 -0.1
1,819,898 + CA264_07855 0.77 -0.9
1,819,898 + CA264_07855 0.77 +0.3
1,819,899 - CA264_07855 0.77 -1.2
1,819,899 - CA264_07855 0.77 -0.6
1,820,031 + -0.3
1,820,032 - -0.8
1,820,063 - -0.0
1,820,152 - +1.4
1,820,153 + -0.2
1,820,161 - +0.3
1,820,166 + +0.1
1,820,189 - +1.0
1,820,281 - CA264_07860 0.12 +0.0
1,820,343 + CA264_07860 0.20 +1.4
1,820,344 - CA264_07860 0.20 -0.2
1,820,344 - CA264_07860 0.20 +0.0
1,820,353 + CA264_07860 0.22 +0.7
1,820,354 - CA264_07860 0.22 -0.4
1,820,354 - CA264_07860 0.22 -1.1
1,820,356 - CA264_07860 0.22 +1.6
1,820,418 + CA264_07860 0.31 +0.1
1,820,419 - CA264_07860 0.31 +0.6
1,820,424 + CA264_07860 0.32 -0.1
1,820,424 + CA264_07860 0.32 -0.3
1,820,424 + CA264_07860 0.32 +0.1
1,820,424 + CA264_07860 0.32 +0.2
1,820,424 + CA264_07860 0.32 +1.6
1,820,425 - CA264_07860 0.32 +0.8
1,820,429 + CA264_07860 0.32 -1.0
1,820,429 + CA264_07860 0.32 +1.2
1,820,429 + CA264_07860 0.32 -0.1
1,820,430 - CA264_07860 0.32 -0.5
1,820,554 + CA264_07860 0.50 -0.0
1,820,714 + CA264_07860 0.72 +0.3
1,820,908 - +0.7
1,820,966 + +0.1
1,820,970 + +0.7
1,820,970 + +0.8
1,820,970 + -0.3
1,820,972 + +0.4
1,820,973 - +0.1
1,821,004 - -1.4
1,821,040 - -0.4
1,821,048 + -0.4
1,821,053 + +0.1
1,821,053 + +0.3
1,821,054 - -0.0
1,821,055 + +1.2
1,821,057 + +0.6
1,821,078 + -0.8
1,821,082 + -0.3

Or see this region's nucleotide sequence