Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07840

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07835 and CA264_07840 are separated by 206 nucleotidesCA264_07840 and CA264_07845 are separated by 171 nucleotides CA264_07835: CA264_07835 - RNA methyltransferase, at 1,814,148 to 1,815,323 _07835 CA264_07840: CA264_07840 - sodium:proline symporter, at 1,815,530 to 1,817,278 _07840 CA264_07845: CA264_07845 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 1,817,450 to 1,818,466 _07845 Position (kb) 1815 1816 1817 1818Strain fitness (log2 ratio) -2 -1 0 1 2at 1814.790 kb on + strand, within CA264_07835at 1814.790 kb on + strand, within CA264_07835at 1814.790 kb on + strand, within CA264_07835at 1814.791 kb on - strand, within CA264_07835at 1814.791 kb on - strand, within CA264_07835at 1814.791 kb on - strand, within CA264_07835at 1814.791 kb on - strand, within CA264_07835at 1814.856 kb on - strand, within CA264_07835at 1814.980 kb on + strand, within CA264_07835at 1814.980 kb on + strand, within CA264_07835at 1814.999 kb on + strand, within CA264_07835at 1815.337 kb on + strandat 1815.338 kb on - strandat 1815.448 kb on - strandat 1815.489 kb on + strandat 1815.490 kb on - strandat 1815.490 kb on - strandat 1815.581 kb on - strandat 1815.588 kb on + strandat 1815.598 kb on + strandat 1815.598 kb on + strandat 1815.599 kb on - strandat 1815.599 kb on - strandat 1815.599 kb on - strandat 1815.599 kb on - strandat 1815.599 kb on - strandat 1815.735 kb on + strand, within CA264_07840at 1815.748 kb on + strand, within CA264_07840at 1815.797 kb on - strand, within CA264_07840at 1815.842 kb on - strand, within CA264_07840at 1815.924 kb on + strand, within CA264_07840at 1815.924 kb on + strand, within CA264_07840at 1815.925 kb on - strand, within CA264_07840at 1815.973 kb on + strand, within CA264_07840at 1815.977 kb on - strand, within CA264_07840at 1815.977 kb on - strand, within CA264_07840at 1816.019 kb on + strand, within CA264_07840at 1816.020 kb on - strand, within CA264_07840at 1816.020 kb on - strand, within CA264_07840at 1816.044 kb on + strand, within CA264_07840at 1816.052 kb on + strand, within CA264_07840at 1816.061 kb on - strand, within CA264_07840at 1816.114 kb on + strand, within CA264_07840at 1816.114 kb on + strand, within CA264_07840at 1816.119 kb on + strand, within CA264_07840at 1816.120 kb on - strand, within CA264_07840at 1816.127 kb on - strand, within CA264_07840at 1816.149 kb on + strand, within CA264_07840at 1816.246 kb on - strand, within CA264_07840at 1816.349 kb on - strand, within CA264_07840at 1816.349 kb on - strand, within CA264_07840at 1816.484 kb on - strand, within CA264_07840at 1816.520 kb on - strand, within CA264_07840at 1816.586 kb on + strand, within CA264_07840at 1816.587 kb on - strand, within CA264_07840at 1816.612 kb on + strand, within CA264_07840at 1816.613 kb on - strand, within CA264_07840at 1816.613 kb on - strand, within CA264_07840at 1816.613 kb on - strand, within CA264_07840at 1816.629 kb on - strand, within CA264_07840at 1816.629 kb on - strand, within CA264_07840at 1816.631 kb on - strand, within CA264_07840at 1816.633 kb on + strand, within CA264_07840at 1816.633 kb on + strand, within CA264_07840at 1816.633 kb on + strand, within CA264_07840at 1816.633 kb on + strand, within CA264_07840at 1816.634 kb on - strand, within CA264_07840at 1816.634 kb on - strand, within CA264_07840at 1816.720 kb on + strand, within CA264_07840at 1816.720 kb on + strand, within CA264_07840at 1816.721 kb on - strand, within CA264_07840at 1816.721 kb on - strand, within CA264_07840at 1816.740 kb on + strand, within CA264_07840at 1816.753 kb on + strand, within CA264_07840at 1816.759 kb on + strand, within CA264_07840at 1816.760 kb on - strand, within CA264_07840at 1816.829 kb on + strand, within CA264_07840at 1816.905 kb on - strand, within CA264_07840at 1816.982 kb on + strand, within CA264_07840at 1816.982 kb on + strand, within CA264_07840at 1816.983 kb on - strand, within CA264_07840at 1816.983 kb on - strand, within CA264_07840at 1817.100 kb on + strand, within CA264_07840at 1817.100 kb on + strand, within CA264_07840at 1817.101 kb on - strand, within CA264_07840at 1817.102 kb on + strand, within CA264_07840at 1817.102 kb on + strand, within CA264_07840at 1817.103 kb on - strand, within CA264_07840at 1817.174 kb on - strandat 1817.187 kb on - strandat 1817.277 kb on - strandat 1817.293 kb on - strandat 1817.293 kb on - strandat 1817.297 kb on + strandat 1817.298 kb on - strandat 1817.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,814,790 + CA264_07835 0.55 +0.5
1,814,790 + CA264_07835 0.55 -0.7
1,814,790 + CA264_07835 0.55 +0.4
1,814,791 - CA264_07835 0.55 -0.6
1,814,791 - CA264_07835 0.55 -0.2
1,814,791 - CA264_07835 0.55 -0.1
1,814,791 - CA264_07835 0.55 -0.3
1,814,856 - CA264_07835 0.60 +0.0
1,814,980 + CA264_07835 0.71 +0.1
1,814,980 + CA264_07835 0.71 -0.5
1,814,999 + CA264_07835 0.72 -0.7
1,815,337 + +0.1
1,815,338 - +0.1
1,815,448 - +0.2
1,815,489 + -0.0
1,815,490 - +1.1
1,815,490 - +0.3
1,815,581 - +0.6
1,815,588 + +0.4
1,815,598 + +0.7
1,815,598 + +0.1
1,815,599 - -0.2
1,815,599 - +0.6
1,815,599 - -0.0
1,815,599 - +0.1
1,815,599 - -0.0
1,815,735 + CA264_07840 0.12 +0.4
1,815,748 + CA264_07840 0.12 -1.6
1,815,797 - CA264_07840 0.15 +0.3
1,815,842 - CA264_07840 0.18 -1.0
1,815,924 + CA264_07840 0.23 -2.1
1,815,924 + CA264_07840 0.23 -0.1
1,815,925 - CA264_07840 0.23 -0.1
1,815,973 + CA264_07840 0.25 -0.2
1,815,977 - CA264_07840 0.26 +0.2
1,815,977 - CA264_07840 0.26 +0.8
1,816,019 + CA264_07840 0.28 +1.9
1,816,020 - CA264_07840 0.28 -0.5
1,816,020 - CA264_07840 0.28 -0.6
1,816,044 + CA264_07840 0.29 -0.3
1,816,052 + CA264_07840 0.30 +0.2
1,816,061 - CA264_07840 0.30 +0.5
1,816,114 + CA264_07840 0.33 +0.3
1,816,114 + CA264_07840 0.33 -0.5
1,816,119 + CA264_07840 0.34 -0.1
1,816,120 - CA264_07840 0.34 +0.5
1,816,127 - CA264_07840 0.34 -0.4
1,816,149 + CA264_07840 0.35 +0.2
1,816,246 - CA264_07840 0.41 +1.8
1,816,349 - CA264_07840 0.47 +0.1
1,816,349 - CA264_07840 0.47 -0.2
1,816,484 - CA264_07840 0.55 -0.6
1,816,520 - CA264_07840 0.57 +1.1
1,816,586 + CA264_07840 0.60 +0.1
1,816,587 - CA264_07840 0.60 -0.2
1,816,612 + CA264_07840 0.62 -0.8
1,816,613 - CA264_07840 0.62 +2.6
1,816,613 - CA264_07840 0.62 +0.1
1,816,613 - CA264_07840 0.62 -0.6
1,816,629 - CA264_07840 0.63 +0.8
1,816,629 - CA264_07840 0.63 -0.0
1,816,631 - CA264_07840 0.63 -0.4
1,816,633 + CA264_07840 0.63 -0.3
1,816,633 + CA264_07840 0.63 +1.8
1,816,633 + CA264_07840 0.63 +0.0
1,816,633 + CA264_07840 0.63 +0.8
1,816,634 - CA264_07840 0.63 -1.6
1,816,634 - CA264_07840 0.63 +1.4
1,816,720 + CA264_07840 0.68 +1.1
1,816,720 + CA264_07840 0.68 +1.5
1,816,721 - CA264_07840 0.68 -0.8
1,816,721 - CA264_07840 0.68 -0.5
1,816,740 + CA264_07840 0.69 +0.7
1,816,753 + CA264_07840 0.70 -0.1
1,816,759 + CA264_07840 0.70 +0.6
1,816,760 - CA264_07840 0.70 +0.4
1,816,829 + CA264_07840 0.74 +0.6
1,816,905 - CA264_07840 0.79 -1.3
1,816,982 + CA264_07840 0.83 -0.2
1,816,982 + CA264_07840 0.83 +0.5
1,816,983 - CA264_07840 0.83 -0.4
1,816,983 - CA264_07840 0.83 -0.3
1,817,100 + CA264_07840 0.90 -0.0
1,817,100 + CA264_07840 0.90 +0.1
1,817,101 - CA264_07840 0.90 +0.1
1,817,102 + CA264_07840 0.90 -0.4
1,817,102 + CA264_07840 0.90 -0.5
1,817,103 - CA264_07840 0.90 -0.4
1,817,174 - -0.1
1,817,187 - -0.4
1,817,277 - +0.1
1,817,293 - +0.1
1,817,293 - -0.8
1,817,297 + +0.9
1,817,298 - -2.2
1,817,349 - -0.8

Or see this region's nucleotide sequence