Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07335

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07325 and CA264_07330 are separated by 77 nucleotidesCA264_07330 and CA264_07335 are separated by 32 nucleotidesCA264_07335 and CA264_07340 are separated by 357 nucleotides CA264_07325: CA264_07325 - YfcE family phosphodiesterase, at 1,692,633 to 1,693,409 _07325 CA264_07330: CA264_07330 - hypothetical protein, at 1,693,487 to 1,694,017 _07330 CA264_07335: CA264_07335 - transcriptional regulator, at 1,694,050 to 1,694,391 _07335 CA264_07340: CA264_07340 - hypothetical protein, at 1,694,749 to 1,695,312 _07340 Position (kb) 1694 1695Strain fitness (log2 ratio) -1 0 1 2at 1693.222 kb on + strand, within CA264_07325at 1693.223 kb on - strand, within CA264_07325at 1693.226 kb on + strand, within CA264_07325at 1693.292 kb on - strand, within CA264_07325at 1693.316 kb on - strand, within CA264_07325at 1693.316 kb on - strand, within CA264_07325at 1693.316 kb on - strand, within CA264_07325at 1693.371 kb on + strandat 1693.427 kb on - strandat 1693.549 kb on + strand, within CA264_07330at 1693.549 kb on + strand, within CA264_07330at 1693.550 kb on - strand, within CA264_07330at 1693.550 kb on - strand, within CA264_07330at 1693.589 kb on - strand, within CA264_07330at 1693.653 kb on + strand, within CA264_07330at 1693.653 kb on + strand, within CA264_07330at 1693.654 kb on - strand, within CA264_07330at 1693.654 kb on - strand, within CA264_07330at 1693.654 kb on - strand, within CA264_07330at 1693.654 kb on - strand, within CA264_07330at 1693.657 kb on - strand, within CA264_07330at 1693.657 kb on - strand, within CA264_07330at 1693.658 kb on + strand, within CA264_07330at 1693.658 kb on + strand, within CA264_07330at 1693.658 kb on + strand, within CA264_07330at 1693.659 kb on - strand, within CA264_07330at 1693.659 kb on - strand, within CA264_07330at 1693.730 kb on + strand, within CA264_07330at 1693.731 kb on - strand, within CA264_07330at 1693.731 kb on - strand, within CA264_07330at 1693.802 kb on + strand, within CA264_07330at 1693.862 kb on + strand, within CA264_07330at 1693.863 kb on - strand, within CA264_07330at 1693.891 kb on - strand, within CA264_07330at 1694.046 kb on - strandat 1694.111 kb on - strand, within CA264_07335at 1694.150 kb on + strand, within CA264_07335at 1694.151 kb on - strand, within CA264_07335at 1694.151 kb on - strand, within CA264_07335at 1694.170 kb on + strand, within CA264_07335at 1694.199 kb on + strand, within CA264_07335at 1694.200 kb on - strand, within CA264_07335at 1694.200 kb on - strand, within CA264_07335at 1694.382 kb on + strandat 1694.383 kb on - strandat 1694.416 kb on - strandat 1694.428 kb on + strandat 1694.431 kb on + strandat 1694.435 kb on + strandat 1694.438 kb on - strandat 1694.441 kb on + strandat 1694.442 kb on - strandat 1694.530 kb on + strandat 1694.601 kb on + strandat 1694.602 kb on - strandat 1694.602 kb on - strandat 1694.606 kb on + strandat 1694.606 kb on + strandat 1694.643 kb on - strandat 1694.725 kb on + strandat 1694.725 kb on + strandat 1694.751 kb on - strandat 1694.793 kb on - strandat 1694.907 kb on - strand, within CA264_07340at 1694.948 kb on - strand, within CA264_07340at 1695.149 kb on + strand, within CA264_07340at 1695.161 kb on + strand, within CA264_07340at 1695.173 kb on + strand, within CA264_07340at 1695.194 kb on + strand, within CA264_07340at 1695.195 kb on - strand, within CA264_07340at 1695.240 kb on + strand, within CA264_07340at 1695.241 kb on - strand, within CA264_07340at 1695.286 kb on + strandat 1695.315 kb on + strandat 1695.315 kb on + strandat 1695.315 kb on + strandat 1695.316 kb on - strandat 1695.316 kb on - strandat 1695.333 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,693,222 + CA264_07325 0.76 -0.4
1,693,223 - CA264_07325 0.76 -1.1
1,693,226 + CA264_07325 0.76 +0.7
1,693,292 - CA264_07325 0.85 -0.4
1,693,316 - CA264_07325 0.88 -0.4
1,693,316 - CA264_07325 0.88 -0.7
1,693,316 - CA264_07325 0.88 -0.7
1,693,371 + -0.4
1,693,427 - -0.9
1,693,549 + CA264_07330 0.12 +0.3
1,693,549 + CA264_07330 0.12 -0.7
1,693,550 - CA264_07330 0.12 +0.2
1,693,550 - CA264_07330 0.12 -0.4
1,693,589 - CA264_07330 0.19 -0.5
1,693,653 + CA264_07330 0.31 +0.8
1,693,653 + CA264_07330 0.31 +1.1
1,693,654 - CA264_07330 0.31 +0.1
1,693,654 - CA264_07330 0.31 +0.1
1,693,654 - CA264_07330 0.31 -1.1
1,693,654 - CA264_07330 0.31 +0.9
1,693,657 - CA264_07330 0.32 +0.6
1,693,657 - CA264_07330 0.32 -0.2
1,693,658 + CA264_07330 0.32 -0.3
1,693,658 + CA264_07330 0.32 -0.4
1,693,658 + CA264_07330 0.32 +1.7
1,693,659 - CA264_07330 0.32 -0.7
1,693,659 - CA264_07330 0.32 -0.4
1,693,730 + CA264_07330 0.46 +1.8
1,693,731 - CA264_07330 0.46 -0.5
1,693,731 - CA264_07330 0.46 -0.1
1,693,802 + CA264_07330 0.59 -0.5
1,693,862 + CA264_07330 0.71 +0.3
1,693,863 - CA264_07330 0.71 +0.5
1,693,891 - CA264_07330 0.76 -0.5
1,694,046 - -0.5
1,694,111 - CA264_07335 0.18 -0.5
1,694,150 + CA264_07335 0.29 +0.9
1,694,151 - CA264_07335 0.30 -1.0
1,694,151 - CA264_07335 0.30 -0.1
1,694,170 + CA264_07335 0.35 -0.3
1,694,199 + CA264_07335 0.44 +0.2
1,694,200 - CA264_07335 0.44 -0.1
1,694,200 - CA264_07335 0.44 -0.2
1,694,382 + -0.5
1,694,383 - -0.9
1,694,416 - +0.3
1,694,428 + -0.2
1,694,431 + +1.1
1,694,435 + -0.6
1,694,438 - +1.2
1,694,441 + -0.1
1,694,442 - -0.1
1,694,530 + -0.4
1,694,601 + +0.5
1,694,602 - -0.1
1,694,602 - -0.2
1,694,606 + -0.2
1,694,606 + +1.0
1,694,643 - -0.2
1,694,725 + +0.5
1,694,725 + -0.5
1,694,751 - +0.0
1,694,793 - -1.6
1,694,907 - CA264_07340 0.28 +0.1
1,694,948 - CA264_07340 0.35 -0.9
1,695,149 + CA264_07340 0.71 -0.3
1,695,161 + CA264_07340 0.73 +0.4
1,695,173 + CA264_07340 0.75 -0.3
1,695,194 + CA264_07340 0.79 -0.8
1,695,195 - CA264_07340 0.79 -1.1
1,695,240 + CA264_07340 0.87 +0.0
1,695,241 - CA264_07340 0.87 -1.2
1,695,286 + +0.2
1,695,315 + -0.7
1,695,315 + +1.2
1,695,315 + -0.3
1,695,316 - +0.1
1,695,316 - +0.3
1,695,333 + +1.0

Or see this region's nucleotide sequence