Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06810

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06800 and CA264_06805 are separated by 4 nucleotidesCA264_06805 and CA264_06810 overlap by 10 nucleotidesCA264_06810 and CA264_06815 are separated by 209 nucleotides CA264_06800: CA264_06800 - hypothetical protein, at 1,571,071 to 1,572,378 _06800 CA264_06805: CA264_06805 - hypothetical protein, at 1,572,383 to 1,573,201 _06805 CA264_06810: CA264_06810 - hypothetical protein, at 1,573,192 to 1,573,701 _06810 CA264_06815: CA264_06815 - iron-sulfur cluster repair di-iron protein, at 1,573,911 to 1,574,867 _06815 Position (kb) 1573 1574Strain fitness (log2 ratio) -2 -1 0 1 2at 1572.214 kb on + strand, within CA264_06800at 1572.249 kb on - strandat 1572.346 kb on - strandat 1572.357 kb on + strandat 1572.387 kb on - strandat 1572.391 kb on + strandat 1572.393 kb on + strandat 1572.393 kb on + strandat 1572.393 kb on + strandat 1572.540 kb on - strand, within CA264_06805at 1572.544 kb on + strand, within CA264_06805at 1572.544 kb on + strand, within CA264_06805at 1572.545 kb on - strand, within CA264_06805at 1572.616 kb on + strand, within CA264_06805at 1572.617 kb on - strand, within CA264_06805at 1572.775 kb on + strand, within CA264_06805at 1572.869 kb on + strand, within CA264_06805at 1572.870 kb on - strand, within CA264_06805at 1572.870 kb on - strand, within CA264_06805at 1572.872 kb on - strand, within CA264_06805at 1572.892 kb on + strand, within CA264_06805at 1572.893 kb on - strand, within CA264_06805at 1572.939 kb on - strand, within CA264_06805at 1572.939 kb on - strand, within CA264_06805at 1572.942 kb on - strand, within CA264_06805at 1572.942 kb on - strand, within CA264_06805at 1573.142 kb on + strandat 1573.143 kb on - strandat 1573.194 kb on - strandat 1573.264 kb on - strand, within CA264_06810at 1573.429 kb on + strand, within CA264_06810at 1573.430 kb on - strand, within CA264_06810at 1573.539 kb on + strand, within CA264_06810at 1573.715 kb on + strandat 1573.716 kb on - strandat 1573.761 kb on - strandat 1573.765 kb on - strandat 1573.912 kb on + strandat 1573.913 kb on - strandat 1573.920 kb on + strandat 1574.007 kb on + strand, within CA264_06815at 1574.024 kb on + strand, within CA264_06815at 1574.027 kb on + strand, within CA264_06815at 1574.027 kb on + strand, within CA264_06815at 1574.027 kb on + strand, within CA264_06815at 1574.027 kb on + strand, within CA264_06815at 1574.027 kb on + strand, within CA264_06815at 1574.028 kb on - strand, within CA264_06815at 1574.029 kb on + strand, within CA264_06815at 1574.029 kb on + strand, within CA264_06815at 1574.030 kb on - strand, within CA264_06815at 1574.030 kb on - strand, within CA264_06815at 1574.030 kb on - strand, within CA264_06815at 1574.059 kb on + strand, within CA264_06815at 1574.060 kb on - strand, within CA264_06815at 1574.060 kb on - strand, within CA264_06815at 1574.063 kb on + strand, within CA264_06815at 1574.172 kb on + strand, within CA264_06815at 1574.172 kb on + strand, within CA264_06815at 1574.175 kb on - strand, within CA264_06815at 1574.284 kb on - strand, within CA264_06815at 1574.338 kb on + strand, within CA264_06815at 1574.367 kb on + strand, within CA264_06815at 1574.368 kb on - strand, within CA264_06815at 1574.371 kb on + strand, within CA264_06815at 1574.371 kb on + strand, within CA264_06815at 1574.372 kb on - strand, within CA264_06815at 1574.395 kb on + strand, within CA264_06815at 1574.395 kb on + strand, within CA264_06815at 1574.396 kb on - strand, within CA264_06815at 1574.564 kb on + strand, within CA264_06815at 1574.565 kb on - strand, within CA264_06815at 1574.569 kb on - strand, within CA264_06815at 1574.678 kb on - strand, within CA264_06815

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,572,214 + CA264_06800 0.87 -1.1
1,572,249 - -1.0
1,572,346 - -0.4
1,572,357 + +0.5
1,572,387 - +1.8
1,572,391 + -0.3
1,572,393 + -0.3
1,572,393 + -0.4
1,572,393 + -0.9
1,572,540 - CA264_06805 0.19 -0.2
1,572,544 + CA264_06805 0.20 -0.1
1,572,544 + CA264_06805 0.20 -0.1
1,572,545 - CA264_06805 0.20 +0.5
1,572,616 + CA264_06805 0.28 -0.9
1,572,617 - CA264_06805 0.29 -1.0
1,572,775 + CA264_06805 0.48 -0.7
1,572,869 + CA264_06805 0.59 +0.1
1,572,870 - CA264_06805 0.59 +1.2
1,572,870 - CA264_06805 0.59 -1.8
1,572,872 - CA264_06805 0.60 +0.2
1,572,892 + CA264_06805 0.62 -0.3
1,572,893 - CA264_06805 0.62 -0.8
1,572,939 - CA264_06805 0.68 +1.0
1,572,939 - CA264_06805 0.68 -0.8
1,572,942 - CA264_06805 0.68 +2.0
1,572,942 - CA264_06805 0.68 +0.4
1,573,142 + +1.0
1,573,143 - +0.3
1,573,194 - +0.4
1,573,264 - CA264_06810 0.14 +0.3
1,573,429 + CA264_06810 0.46 +1.8
1,573,430 - CA264_06810 0.47 +0.5
1,573,539 + CA264_06810 0.68 -0.1
1,573,715 + -0.1
1,573,716 - +1.3
1,573,761 - -0.3
1,573,765 - -0.5
1,573,912 + -0.2
1,573,913 - +0.4
1,573,920 + -0.8
1,574,007 + CA264_06815 0.10 -0.2
1,574,024 + CA264_06815 0.12 -1.1
1,574,027 + CA264_06815 0.12 -0.3
1,574,027 + CA264_06815 0.12 -0.5
1,574,027 + CA264_06815 0.12 +0.6
1,574,027 + CA264_06815 0.12 -0.5
1,574,027 + CA264_06815 0.12 -0.7
1,574,028 - CA264_06815 0.12 -0.3
1,574,029 + CA264_06815 0.12 +0.8
1,574,029 + CA264_06815 0.12 -0.2
1,574,030 - CA264_06815 0.12 -0.9
1,574,030 - CA264_06815 0.12 -0.8
1,574,030 - CA264_06815 0.12 -0.4
1,574,059 + CA264_06815 0.15 +0.2
1,574,060 - CA264_06815 0.16 -0.6
1,574,060 - CA264_06815 0.16 +0.8
1,574,063 + CA264_06815 0.16 -1.0
1,574,172 + CA264_06815 0.27 -0.8
1,574,172 + CA264_06815 0.27 -0.3
1,574,175 - CA264_06815 0.28 +0.6
1,574,284 - CA264_06815 0.39 -0.1
1,574,338 + CA264_06815 0.45 +0.3
1,574,367 + CA264_06815 0.48 +0.2
1,574,368 - CA264_06815 0.48 +0.1
1,574,371 + CA264_06815 0.48 +0.5
1,574,371 + CA264_06815 0.48 -0.3
1,574,372 - CA264_06815 0.48 -0.6
1,574,395 + CA264_06815 0.51 -0.1
1,574,395 + CA264_06815 0.51 -1.2
1,574,396 - CA264_06815 0.51 +0.1
1,574,564 + CA264_06815 0.68 +0.1
1,574,565 - CA264_06815 0.68 +0.2
1,574,569 - CA264_06815 0.69 +0.8
1,574,678 - CA264_06815 0.80 -1.6

Or see this region's nucleotide sequence