Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00160

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00150 and CA264_00155 overlap by 59 nucleotidesCA264_00155 and CA264_00160 are separated by 130 nucleotidesCA264_00160 and CA264_00165 are separated by 9 nucleotidesCA264_00165 and CA264_00170 overlap by 1 nucleotides CA264_00150: CA264_00150 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 37,745 to 38,551 _00150 CA264_00155: CA264_00155 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 38,493 to 38,780 _00155 CA264_00160: CA264_00160 - hypothetical protein, at 38,911 to 41,952 _00160 CA264_00165: CA264_00165 - macrolide ABC transporter ATP-binding protein, at 41,962 to 42,690 _00165 CA264_00170: CA264_00170 - ATP:cob(I)alamin adenosyltransferase, at 42,690 to 43,244 _00170 Position (kb) 38 39 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 37.999 kb on + strand, within CA264_00150at 38.000 kb on + strand, within CA264_00150at 38.000 kb on + strand, within CA264_00150at 38.042 kb on - strand, within CA264_00150at 38.045 kb on - strand, within CA264_00150at 38.096 kb on + strand, within CA264_00150at 38.119 kb on - strand, within CA264_00150at 38.119 kb on - strand, within CA264_00150at 38.158 kb on - strand, within CA264_00150at 38.315 kb on + strand, within CA264_00150at 38.358 kb on + strand, within CA264_00150at 38.375 kb on - strand, within CA264_00150at 38.482 kb on + strandat 38.486 kb on - strandat 38.486 kb on - strandat 38.795 kb on + strandat 38.809 kb on + strandat 38.883 kb on + strandat 39.008 kb on + strandat 39.008 kb on + strandat 39.008 kb on + strandat 39.009 kb on - strandat 39.010 kb on + strandat 39.010 kb on + strandat 39.117 kb on + strandat 39.155 kb on - strandat 39.176 kb on + strandat 39.313 kb on - strand, within CA264_00160at 39.323 kb on + strand, within CA264_00160at 39.368 kb on + strand, within CA264_00160at 39.369 kb on - strand, within CA264_00160at 39.372 kb on + strand, within CA264_00160at 39.372 kb on + strand, within CA264_00160at 39.372 kb on + strand, within CA264_00160at 39.373 kb on - strand, within CA264_00160at 39.373 kb on - strand, within CA264_00160at 39.374 kb on + strand, within CA264_00160at 39.375 kb on - strand, within CA264_00160at 39.394 kb on - strand, within CA264_00160at 39.397 kb on + strand, within CA264_00160at 39.397 kb on + strand, within CA264_00160at 39.397 kb on + strand, within CA264_00160at 39.424 kb on - strand, within CA264_00160at 39.488 kb on - strand, within CA264_00160at 39.538 kb on + strand, within CA264_00160at 39.539 kb on - strand, within CA264_00160at 39.602 kb on + strand, within CA264_00160at 39.602 kb on + strand, within CA264_00160at 39.602 kb on + strand, within CA264_00160at 39.603 kb on - strand, within CA264_00160at 39.624 kb on + strand, within CA264_00160at 39.624 kb on + strand, within CA264_00160at 39.633 kb on + strand, within CA264_00160at 39.675 kb on + strand, within CA264_00160at 39.676 kb on - strand, within CA264_00160at 39.688 kb on + strand, within CA264_00160at 39.713 kb on - strand, within CA264_00160at 39.748 kb on - strand, within CA264_00160at 39.751 kb on + strand, within CA264_00160at 39.752 kb on - strand, within CA264_00160at 39.752 kb on - strand, within CA264_00160at 39.753 kb on + strand, within CA264_00160at 39.763 kb on + strand, within CA264_00160at 39.768 kb on + strand, within CA264_00160at 39.825 kb on - strand, within CA264_00160at 39.868 kb on + strand, within CA264_00160at 40.060 kb on + strand, within CA264_00160at 40.060 kb on + strand, within CA264_00160at 40.061 kb on - strand, within CA264_00160at 40.096 kb on - strand, within CA264_00160at 40.096 kb on - strand, within CA264_00160at 40.135 kb on - strand, within CA264_00160at 40.151 kb on - strand, within CA264_00160at 40.151 kb on - strand, within CA264_00160at 40.174 kb on + strand, within CA264_00160at 40.174 kb on + strand, within CA264_00160at 40.175 kb on - strand, within CA264_00160at 40.175 kb on - strand, within CA264_00160at 40.175 kb on - strand, within CA264_00160at 40.175 kb on - strand, within CA264_00160at 40.175 kb on - strand, within CA264_00160at 40.175 kb on - strand, within CA264_00160at 40.217 kb on + strand, within CA264_00160at 40.217 kb on + strand, within CA264_00160at 40.253 kb on - strand, within CA264_00160at 40.275 kb on + strand, within CA264_00160at 40.275 kb on + strand, within CA264_00160at 40.297 kb on + strand, within CA264_00160at 40.376 kb on - strand, within CA264_00160at 40.376 kb on - strandat 40.477 kb on + strand, within CA264_00160at 40.478 kb on - strand, within CA264_00160at 40.498 kb on + strand, within CA264_00160at 40.531 kb on + strand, within CA264_00160at 40.600 kb on + strand, within CA264_00160at 40.601 kb on - strand, within CA264_00160at 40.601 kb on - strand, within CA264_00160at 40.601 kb on - strand, within CA264_00160at 40.603 kb on - strand, within CA264_00160at 40.663 kb on + strand, within CA264_00160at 40.665 kb on + strand, within CA264_00160at 40.666 kb on - strand, within CA264_00160at 40.695 kb on - strand, within CA264_00160at 40.737 kb on + strand, within CA264_00160at 40.833 kb on + strand, within CA264_00160at 40.843 kb on + strand, within CA264_00160at 40.886 kb on - strand, within CA264_00160at 40.889 kb on - strand, within CA264_00160at 40.905 kb on - strand, within CA264_00160at 40.912 kb on + strand, within CA264_00160at 40.912 kb on + strand, within CA264_00160at 40.987 kb on + strand, within CA264_00160at 40.988 kb on - strand, within CA264_00160at 41.052 kb on + strand, within CA264_00160at 41.086 kb on + strand, within CA264_00160at 41.162 kb on - strand, within CA264_00160at 41.270 kb on - strand, within CA264_00160at 41.377 kb on + strand, within CA264_00160at 41.378 kb on - strand, within CA264_00160at 41.378 kb on - strand, within CA264_00160at 41.421 kb on + strand, within CA264_00160at 41.578 kb on + strand, within CA264_00160at 41.584 kb on - strand, within CA264_00160at 41.594 kb on + strand, within CA264_00160at 41.636 kb on - strand, within CA264_00160at 41.649 kb on + strandat 41.649 kb on + strandat 41.649 kb on + strandat 41.650 kb on - strandat 41.650 kb on - strandat 41.707 kb on + strandat 41.708 kb on - strandat 41.708 kb on - strandat 41.710 kb on - strandat 41.732 kb on - strandat 41.754 kb on + strandat 41.758 kb on + strandat 41.759 kb on - strandat 41.782 kb on + strandat 41.792 kb on - strandat 41.878 kb on + strandat 41.879 kb on - strandat 41.879 kb on - strandat 41.879 kb on - strandat 41.988 kb on + strandat 42.034 kb on - strandat 42.112 kb on - strand, within CA264_00165at 42.246 kb on + strand, within CA264_00165at 42.247 kb on - strand, within CA264_00165at 42.439 kb on - strand, within CA264_00165at 42.481 kb on - strand, within CA264_00165at 42.502 kb on + strand, within CA264_00165at 42.502 kb on + strand, within CA264_00165at 42.503 kb on - strand, within CA264_00165at 42.586 kb on + strand, within CA264_00165at 42.587 kb on - strand, within CA264_00165at 42.704 kb on + strandat 42.734 kb on + strandat 42.736 kb on + strandat 42.736 kb on + strandat 42.737 kb on - strandat 42.737 kb on - strandat 42.737 kb on - strandat 42.766 kb on + strand, within CA264_00170at 42.767 kb on - strand, within CA264_00170at 42.780 kb on + strand, within CA264_00170at 42.868 kb on + strand, within CA264_00170at 42.869 kb on - strand, within CA264_00170at 42.869 kb on - strand, within CA264_00170

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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37,999 + CA264_00150 0.31 +0.7
38,000 + CA264_00150 0.32 +0.9
38,000 + CA264_00150 0.32 -0.0
38,042 - CA264_00150 0.37 -1.2
38,045 - CA264_00150 0.37 -0.8
38,096 + CA264_00150 0.43 +0.5
38,119 - CA264_00150 0.46 +0.7
38,119 - CA264_00150 0.46 -1.0
38,158 - CA264_00150 0.51 +0.2
38,315 + CA264_00150 0.71 +1.3
38,358 + CA264_00150 0.76 -0.0
38,375 - CA264_00150 0.78 +0.2
38,482 + -0.8
38,486 - +1.5
38,486 - +0.3
38,795 + +0.0
38,809 + -0.5
38,883 + -0.6
39,008 + -0.3
39,008 + -0.7
39,008 + +0.3
39,009 - -0.8
39,010 + -0.9
39,010 + +0.4
39,117 + +0.6
39,155 - -0.2
39,176 + -0.2
39,313 - CA264_00160 0.13 -0.4
39,323 + CA264_00160 0.14 -1.1
39,368 + CA264_00160 0.15 +0.0
39,369 - CA264_00160 0.15 -0.6
39,372 + CA264_00160 0.15 -0.1
39,372 + CA264_00160 0.15 -0.6
39,372 + CA264_00160 0.15 -1.5
39,373 - CA264_00160 0.15 +0.5
39,373 - CA264_00160 0.15 +0.1
39,374 + CA264_00160 0.15 +0.0
39,375 - CA264_00160 0.15 +0.1
39,394 - CA264_00160 0.16 +0.1
39,397 + CA264_00160 0.16 -1.7
39,397 + CA264_00160 0.16 -0.3
39,397 + CA264_00160 0.16 +1.1
39,424 - CA264_00160 0.17 +0.2
39,488 - CA264_00160 0.19 +0.0
39,538 + CA264_00160 0.21 +1.7
39,539 - CA264_00160 0.21 +0.5
39,602 + CA264_00160 0.23 -1.3
39,602 + CA264_00160 0.23 -1.0
39,602 + CA264_00160 0.23 -0.4
39,603 - CA264_00160 0.23 -0.3
39,624 + CA264_00160 0.23 -0.1
39,624 + CA264_00160 0.23 -1.0
39,633 + CA264_00160 0.24 +1.3
39,675 + CA264_00160 0.25 -0.2
39,676 - CA264_00160 0.25 -0.7
39,688 + CA264_00160 0.26 -0.2
39,713 - CA264_00160 0.26 -0.5
39,748 - CA264_00160 0.28 -0.2
39,751 + CA264_00160 0.28 -2.3
39,752 - CA264_00160 0.28 +0.4
39,752 - CA264_00160 0.28 +0.4
39,753 + CA264_00160 0.28 +1.3
39,763 + CA264_00160 0.28 -2.3
39,768 + CA264_00160 0.28 -0.6
39,825 - CA264_00160 0.30 -0.2
39,868 + CA264_00160 0.31 -0.3
40,060 + CA264_00160 0.38 -1.0
40,060 + CA264_00160 0.38 +0.2
40,061 - CA264_00160 0.38 -0.0
40,096 - CA264_00160 0.39 -0.2
40,096 - CA264_00160 0.39 -0.1
40,135 - CA264_00160 0.40 -0.5
40,151 - CA264_00160 0.41 -1.4
40,151 - CA264_00160 0.41 +0.4
40,174 + CA264_00160 0.42 -0.5
40,174 + CA264_00160 0.42 -0.6
40,175 - CA264_00160 0.42 -0.1
40,175 - CA264_00160 0.42 -0.5
40,175 - CA264_00160 0.42 -0.4
40,175 - CA264_00160 0.42 +0.7
40,175 - CA264_00160 0.42 -0.1
40,175 - CA264_00160 0.42 +1.0
40,217 + CA264_00160 0.43 -0.4
40,217 + CA264_00160 0.43 -1.1
40,253 - CA264_00160 0.44 +0.1
40,275 + CA264_00160 0.45 +0.7
40,275 + CA264_00160 0.45 -1.2
40,297 + CA264_00160 0.46 -0.4
40,376 - CA264_00160 0.48 -0.7
40,376 - +1.2
40,477 + CA264_00160 0.51 -0.1
40,478 - CA264_00160 0.52 +0.9
40,498 + CA264_00160 0.52 -0.9
40,531 + CA264_00160 0.53 -0.3
40,600 + CA264_00160 0.56 -0.2
40,601 - CA264_00160 0.56 -0.1
40,601 - CA264_00160 0.56 +1.2
40,601 - CA264_00160 0.56 +0.3
40,603 - CA264_00160 0.56 +0.4
40,663 + CA264_00160 0.58 -0.8
40,665 + CA264_00160 0.58 -0.6
40,666 - CA264_00160 0.58 -0.4
40,695 - CA264_00160 0.59 +0.1
40,737 + CA264_00160 0.60 +0.4
40,833 + CA264_00160 0.63 +1.1
40,843 + CA264_00160 0.64 -0.4
40,886 - CA264_00160 0.65 -0.1
40,889 - CA264_00160 0.65 -0.3
40,905 - CA264_00160 0.66 -0.3
40,912 + CA264_00160 0.66 +0.3
40,912 + CA264_00160 0.66 -0.6
40,987 + CA264_00160 0.68 +0.2
40,988 - CA264_00160 0.68 -0.2
41,052 + CA264_00160 0.70 -0.6
41,086 + CA264_00160 0.71 -0.1
41,162 - CA264_00160 0.74 -0.5
41,270 - CA264_00160 0.78 -0.8
41,377 + CA264_00160 0.81 -0.4
41,378 - CA264_00160 0.81 -0.7
41,378 - CA264_00160 0.81 -0.2
41,421 + CA264_00160 0.83 -1.6
41,578 + CA264_00160 0.88 -0.1
41,584 - CA264_00160 0.88 +0.1
41,594 + CA264_00160 0.88 -0.3
41,636 - CA264_00160 0.90 +0.1
41,649 + +0.7
41,649 + -2.1
41,649 + -0.8
41,650 - +1.4
41,650 - -1.0
41,707 + -0.1
41,708 - +0.0
41,708 - -0.6
41,710 - +0.8
41,732 - +0.6
41,754 + -0.2
41,758 + -0.7
41,759 - -0.1
41,782 + -0.5
41,792 - +0.7
41,878 + -1.0
41,879 - -0.7
41,879 - +0.2
41,879 - -0.8
41,988 + -2.2
42,034 - -1.9
42,112 - CA264_00165 0.21 -0.3
42,246 + CA264_00165 0.39 -0.8
42,247 - CA264_00165 0.39 -0.5
42,439 - CA264_00165 0.65 +0.2
42,481 - CA264_00165 0.71 +0.3
42,502 + CA264_00165 0.74 -0.3
42,502 + CA264_00165 0.74 +0.5
42,503 - CA264_00165 0.74 +0.2
42,586 + CA264_00165 0.86 -0.5
42,587 - CA264_00165 0.86 -0.3
42,704 + +2.0
42,734 + -0.4
42,736 + -0.4
42,736 + +0.6
42,737 - +0.3
42,737 - -1.3
42,737 - +0.8
42,766 + CA264_00170 0.14 -1.0
42,767 - CA264_00170 0.14 +0.9
42,780 + CA264_00170 0.16 +0.2
42,868 + CA264_00170 0.32 +0.0
42,869 - CA264_00170 0.32 +0.3
42,869 - CA264_00170 0.32 -0.3

Or see this region's nucleotide sequence