Strain Fitness in Agrobacterium fabrum C58 around Atu0949

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0947 and Atu0948 are separated by 31 nucleotidesAtu0948 and Atu0949 are separated by 155 nucleotidesAtu0949 and Atu0950 are separated by 23 nucleotides Atu0947: Atu0947 - transcriptional regulator, AsnC family, at 936,462 to 936,893 Atu0947 Atu0948: Atu0948 - hypothetical protein, at 936,925 to 937,293 Atu0948 Atu0949: Atu0949 - hypothetical protein, at 937,449 to 938,288 Atu0949 Atu0950: Atu0950 - hypothetical protein, at 938,312 to 939,976 Atu0950 Position (kb) 937 938 939Strain fitness (log2 ratio) -2 -1 0 1at 936.535 kb on - strand, within Atu0947at 936.661 kb on + strand, within Atu0947at 936.661 kb on + strand, within Atu0947at 936.676 kb on + strand, within Atu0947at 936.857 kb on + strandat 936.906 kb on + strandat 936.906 kb on + strandat 936.906 kb on + strandat 936.906 kb on + strandat 936.906 kb on + strandat 936.906 kb on + strandat 936.923 kb on + strandat 937.121 kb on - strand, within Atu0948at 937.148 kb on + strand, within Atu0948at 937.213 kb on - strand, within Atu0948at 937.237 kb on + strand, within Atu0948at 937.237 kb on + strand, within Atu0948at 937.237 kb on + strand, within Atu0948at 937.240 kb on - strand, within Atu0948at 937.245 kb on - strand, within Atu0948at 937.245 kb on - strand, within Atu0948at 937.245 kb on - strand, within Atu0948at 937.532 kb on + strandat 937.552 kb on + strand, within Atu0949at 937.628 kb on - strand, within Atu0949at 937.645 kb on + strand, within Atu0949at 937.653 kb on - strand, within Atu0949at 937.729 kb on - strand, within Atu0949at 937.973 kb on - strand, within Atu0949at 937.975 kb on - strand, within Atu0949at 937.995 kb on + strand, within Atu0949at 938.003 kb on - strand, within Atu0949at 938.003 kb on - strand, within Atu0949at 938.020 kb on + strand, within Atu0949at 938.075 kb on + strand, within Atu0949at 938.146 kb on - strand, within Atu0949at 938.165 kb on + strand, within Atu0949at 938.165 kb on + strand, within Atu0949at 938.165 kb on + strand, within Atu0949at 938.173 kb on - strand, within Atu0949at 938.173 kb on - strand, within Atu0949at 938.173 kb on - strand, within Atu0949at 938.184 kb on + strand, within Atu0949at 938.193 kb on + strand, within Atu0949at 938.227 kb on + strandat 938.273 kb on - strandat 938.283 kb on - strandat 938.401 kb on + strandat 938.426 kb on - strandat 938.453 kb on - strandat 938.527 kb on - strand, within Atu0950at 938.546 kb on + strand, within Atu0950at 938.594 kb on - strand, within Atu0950at 938.678 kb on - strand, within Atu0950at 938.863 kb on + strand, within Atu0950at 938.937 kb on + strand, within Atu0950at 938.945 kb on - strand, within Atu0950at 938.945 kb on - strand, within Atu0950at 939.061 kb on - strand, within Atu0950at 939.068 kb on - strand, within Atu0950at 939.107 kb on - strand, within Atu0950at 939.113 kb on + strand, within Atu0950at 939.121 kb on - strand, within Atu0950at 939.143 kb on - strand, within Atu0950at 939.169 kb on - strand, within Atu0950at 939.215 kb on - strand, within Atu0950

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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936,535 - Atu0947 0.17 -1.1
936,661 + Atu0947 0.46 -0.6
936,661 + Atu0947 0.46 -0.6
936,676 + Atu0947 0.50 -0.3
936,857 + -0.4
936,906 + +0.8
936,906 + -0.3
936,906 + +0.7
936,906 + -1.0
936,906 + +0.7
936,906 + -0.4
936,923 + -0.2
937,121 - Atu0948 0.53 +0.3
937,148 + Atu0948 0.60 +0.0
937,213 - Atu0948 0.78 +1.0
937,237 + Atu0948 0.85 -2.7
937,237 + Atu0948 0.85 +0.3
937,237 + Atu0948 0.85 -0.4
937,240 - Atu0948 0.85 +0.2
937,245 - Atu0948 0.87 +0.8
937,245 - Atu0948 0.87 -0.3
937,245 - Atu0948 0.87 +1.5
937,532 + +0.4
937,552 + Atu0949 0.12 +0.7
937,628 - Atu0949 0.21 +0.3
937,645 + Atu0949 0.23 +0.4
937,653 - Atu0949 0.24 +0.2
937,729 - Atu0949 0.33 +0.0
937,973 - Atu0949 0.62 +0.2
937,975 - Atu0949 0.63 +0.4
937,995 + Atu0949 0.65 +0.9
938,003 - Atu0949 0.66 +0.5
938,003 - Atu0949 0.66 +1.4
938,020 + Atu0949 0.68 +0.4
938,075 + Atu0949 0.75 +0.0
938,146 - Atu0949 0.83 +0.2
938,165 + Atu0949 0.85 +0.1
938,165 + Atu0949 0.85 +0.0
938,165 + Atu0949 0.85 +1.6
938,173 - Atu0949 0.86 +0.6
938,173 - Atu0949 0.86 +0.8
938,173 - Atu0949 0.86 -0.1
938,184 + Atu0949 0.88 -0.8
938,193 + Atu0949 0.89 +0.5
938,227 + -0.1
938,273 - -0.1
938,283 - -0.0
938,401 + +0.4
938,426 - +0.6
938,453 - +0.7
938,527 - Atu0950 0.13 -0.4
938,546 + Atu0950 0.14 +0.1
938,594 - Atu0950 0.17 +1.3
938,678 - Atu0950 0.22 +0.3
938,863 + Atu0950 0.33 -0.3
938,937 + Atu0950 0.38 -0.1
938,945 - Atu0950 0.38 -0.4
938,945 - Atu0950 0.38 +0.3
939,061 - Atu0950 0.45 +0.7
939,068 - Atu0950 0.45 +0.7
939,107 - Atu0950 0.48 +0.0
939,113 + Atu0950 0.48 +0.3
939,121 - Atu0950 0.49 +0.3
939,143 - Atu0950 0.50 +1.7
939,169 - Atu0950 0.51 -1.5
939,215 - Atu0950 0.54 +0.3

Or see this region's nucleotide sequence