Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22930

Experiment: 30_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22920 and AMB_RS22925 are separated by 101 nucleotidesAMB_RS22925 and AMB_RS22930 are separated by 3 nucleotidesAMB_RS22930 and AMB_RS22935 are separated by 1 nucleotidesAMB_RS22935 and AMB_RS22940 are separated by 31 nucleotides AMB_RS22920: AMB_RS22920 - phosphoribosyl-ATP pyrophosphatase, at 4,942,320 to 4,942,649 _RS22920 AMB_RS22925: AMB_RS22925 - imidazole glycerol phosphate synthase cyclase subunit, at 4,942,751 to 4,943,509 _RS22925 AMB_RS22930: AMB_RS22930 - 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase, at 4,943,513 to 4,944,232 _RS22930 AMB_RS22935: AMB_RS22935 - imidazole glycerol phosphate synthase subunit HisH, at 4,944,234 to 4,944,884 _RS22935 AMB_RS22940: AMB_RS22940 - imidazoleglycerol-phosphate dehydratase, at 4,944,916 to 4,945,515 _RS22940 Position (kb) 4943 4944 4945Strain fitness (log2 ratio) -1 0 1at 4942.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_3
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4,942,665 - -1.1

Or see this region's nucleotide sequence