Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21165 and AMB_RS21170 are separated by 10 nucleotides AMB_RS21170 and AMB_RS21175 are separated by 188 nucleotides AMB_RS21175 and AMB_RS23645 overlap by 4 nucleotides
AMB_RS21165: AMB_RS21165 - GTP-binding protein TypA, at 4,597,580 to 4,599,399
_RS21165
AMB_RS21170: AMB_RS21170 - adenosine kinase, at 4,599,410 to 4,600,426
_RS21170
AMB_RS21175: AMB_RS21175 - hypothetical protein, at 4,600,615 to 4,601,289
_RS21175
AMB_RS23645: AMB_RS23645 - hypothetical protein, at 4,601,286 to 4,601,705
_RS23645
Position (kb) 4599
4600
4601 Strain fitness (log2 ratio) -2
-1
0
1 at 4599.431 kb on - strand at 4599.585 kb on + strand, within AMB_RS21170 at 4599.586 kb on - strand, within AMB_RS21170 at 4599.586 kb on - strand, within AMB_RS21170 at 4599.586 kb on - strand, within AMB_RS21170 at 4599.586 kb on - strand, within AMB_RS21170 at 4599.586 kb on - strand, within AMB_RS21170 at 4599.626 kb on - strand, within AMB_RS21170 at 4599.943 kb on - strand, within AMB_RS21170 at 4599.949 kb on - strand, within AMB_RS21170 at 4599.960 kb on + strand, within AMB_RS21170 at 4599.961 kb on - strand, within AMB_RS21170 at 4599.961 kb on - strand, within AMB_RS21170 at 4600.033 kb on - strand, within AMB_RS21170 at 4600.033 kb on - strand, within AMB_RS21170 at 4600.033 kb on - strand, within AMB_RS21170 at 4600.033 kb on - strand, within AMB_RS21170 at 4600.033 kb on - strand, within AMB_RS21170 at 4600.033 kb on - strand, within AMB_RS21170 at 4600.192 kb on - strand, within AMB_RS21170 at 4600.281 kb on + strand, within AMB_RS21170 at 4600.281 kb on + strand, within AMB_RS21170 at 4600.281 kb on + strand, within AMB_RS21170 at 4600.373 kb on + strand at 4600.374 kb on - strand at 4600.374 kb on - strand at 4600.430 kb on + strand at 4600.431 kb on - strand at 4600.431 kb on - strand at 4600.435 kb on - strand at 4600.435 kb on - strand at 4600.511 kb on - strand at 4600.511 kb on - strand at 4600.528 kb on - strand at 4600.636 kb on + strand at 4600.636 kb on + strand at 4600.636 kb on + strand at 4600.636 kb on + strand at 4600.637 kb on - strand at 4600.912 kb on + strand, within AMB_RS21175 at 4601.020 kb on + strand, within AMB_RS21175 at 4601.020 kb on + strand, within AMB_RS21175 at 4601.020 kb on + strand, within AMB_RS21175 at 4601.021 kb on - strand, within AMB_RS21175 at 4601.062 kb on + strand, within AMB_RS21175 at 4601.077 kb on + strand, within AMB_RS21175 at 4601.077 kb on + strand, within AMB_RS21175 at 4601.078 kb on - strand, within AMB_RS21175 at 4601.096 kb on - strand, within AMB_RS21175 at 4601.096 kb on - strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.190 kb on + strand, within AMB_RS21175 at 4601.191 kb on - strand, within AMB_RS21175
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 4,599,431 - +0.6 4,599,585 + AMB_RS21170 0.17 -0.6 4,599,586 - AMB_RS21170 0.17 +0.4 4,599,586 - AMB_RS21170 0.17 +0.9 4,599,586 - AMB_RS21170 0.17 -1.0 4,599,586 - AMB_RS21170 0.17 -0.6 4,599,586 - AMB_RS21170 0.17 -0.6 4,599,626 - AMB_RS21170 0.21 -2.3 4,599,943 - AMB_RS21170 0.52 -1.2 4,599,949 - AMB_RS21170 0.53 -0.7 4,599,960 + AMB_RS21170 0.54 -0.4 4,599,961 - AMB_RS21170 0.54 -1.6 4,599,961 - AMB_RS21170 0.54 +1.4 4,600,033 - AMB_RS21170 0.61 -0.3 4,600,033 - AMB_RS21170 0.61 -0.0 4,600,033 - AMB_RS21170 0.61 -1.4 4,600,033 - AMB_RS21170 0.61 -1.0 4,600,033 - AMB_RS21170 0.61 -0.2 4,600,033 - AMB_RS21170 0.61 -0.4 4,600,192 - AMB_RS21170 0.77 -0.8 4,600,281 + AMB_RS21170 0.86 -1.2 4,600,281 + AMB_RS21170 0.86 +0.1 4,600,281 + AMB_RS21170 0.86 -1.0 4,600,373 + -1.0 4,600,374 - -2.2 4,600,374 - -0.9 4,600,430 + +0.7 4,600,431 - +0.8 4,600,431 - -0.8 4,600,435 - -1.0 4,600,435 - -0.5 4,600,511 - -0.3 4,600,511 - -0.8 4,600,528 - +0.2 4,600,636 + -0.3 4,600,636 + +0.1 4,600,636 + +0.7 4,600,636 + -1.0 4,600,637 - -1.2 4,600,912 + AMB_RS21175 0.44 +0.6 4,601,020 + AMB_RS21175 0.60 -0.4 4,601,020 + AMB_RS21175 0.60 -0.4 4,601,020 + AMB_RS21175 0.60 -0.4 4,601,021 - AMB_RS21175 0.60 -1.2 4,601,062 + AMB_RS21175 0.66 -0.4 4,601,077 + AMB_RS21175 0.68 +1.0 4,601,077 + AMB_RS21175 0.68 +0.2 4,601,078 - AMB_RS21175 0.69 -0.6 4,601,096 - AMB_RS21175 0.71 +0.8 4,601,096 - AMB_RS21175 0.71 -1.6 4,601,190 + AMB_RS21175 0.85 -0.1 4,601,190 + AMB_RS21175 0.85 -1.4 4,601,190 + AMB_RS21175 0.85 -0.0 4,601,190 + AMB_RS21175 0.85 +0.5 4,601,190 + AMB_RS21175 0.85 -0.6 4,601,190 + AMB_RS21175 0.85 -0.9 4,601,191 - AMB_RS21175 0.85 -2.4
Or see this region's nucleotide sequence