Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20890 and AMB_RS20895 overlap by 8 nucleotides AMB_RS20895 and AMB_RS20900 are separated by 3 nucleotides
AMB_RS20890: AMB_RS20890 - iron-sulfur cluster-binding protein, at 4,535,397 to 4,536,833
_RS20890
AMB_RS20895: AMB_RS20895 - lactate utilization protein, at 4,536,826 to 4,537,476
_RS20895
AMB_RS20900: AMB_RS20900 - FAD-binding oxidoreductase, at 4,537,480 to 4,540,290
_RS20900
Position (kb) 4536
4537
4538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4535.852 kb on + strand, within AMB_RS20890 at 4535.929 kb on - strand, within AMB_RS20890 at 4535.929 kb on - strand, within AMB_RS20890 at 4535.931 kb on - strand, within AMB_RS20890 at 4536.207 kb on + strand, within AMB_RS20890 at 4536.207 kb on + strand, within AMB_RS20890 at 4536.208 kb on - strand, within AMB_RS20890 at 4536.208 kb on - strand, within AMB_RS20890 at 4536.208 kb on - strand, within AMB_RS20890 at 4536.375 kb on + strand, within AMB_RS20890 at 4536.375 kb on + strand, within AMB_RS20890 at 4536.375 kb on + strand, within AMB_RS20890 at 4536.376 kb on - strand, within AMB_RS20890 at 4536.376 kb on - strand, within AMB_RS20890 at 4536.376 kb on - strand, within AMB_RS20890 at 4536.376 kb on - strand, within AMB_RS20890 at 4536.377 kb on + strand, within AMB_RS20890 at 4536.377 kb on + strand, within AMB_RS20890 at 4536.378 kb on - strand, within AMB_RS20890 at 4536.378 kb on - strand, within AMB_RS20890 at 4536.378 kb on - strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.399 kb on + strand, within AMB_RS20890 at 4536.400 kb on - strand, within AMB_RS20890 at 4536.400 kb on - strand, within AMB_RS20890 at 4536.400 kb on - strand, within AMB_RS20890 at 4536.400 kb on - strand, within AMB_RS20890 at 4536.660 kb on + strand, within AMB_RS20890 at 4536.660 kb on + strand, within AMB_RS20890 at 4536.660 kb on + strand, within AMB_RS20890 at 4536.661 kb on - strand, within AMB_RS20890 at 4536.661 kb on - strand, within AMB_RS20890 at 4536.678 kb on + strand, within AMB_RS20890 at 4536.819 kb on + strand at 4536.819 kb on + strand at 4536.819 kb on + strand at 4536.820 kb on - strand at 4536.831 kb on + strand at 4536.832 kb on - strand at 4536.846 kb on + strand at 4536.846 kb on + strand at 4536.847 kb on - strand at 4536.847 kb on - strand at 4536.917 kb on - strand, within AMB_RS20895 at 4536.917 kb on - strand, within AMB_RS20895 at 4537.047 kb on + strand, within AMB_RS20895 at 4537.047 kb on + strand, within AMB_RS20895 at 4537.047 kb on + strand, within AMB_RS20895 at 4537.047 kb on + strand, within AMB_RS20895 at 4537.047 kb on + strand, within AMB_RS20895 at 4537.047 kb on + strand, within AMB_RS20895 at 4537.047 kb on + strand, within AMB_RS20895 at 4537.047 kb on + strand, within AMB_RS20895 at 4537.047 kb on + strand, within AMB_RS20895 at 4537.047 kb on + strand, within AMB_RS20895 at 4537.048 kb on - strand, within AMB_RS20895 at 4537.048 kb on - strand, within AMB_RS20895 at 4537.048 kb on - strand, within AMB_RS20895 at 4537.048 kb on - strand, within AMB_RS20895 at 4537.054 kb on + strand, within AMB_RS20895 at 4537.054 kb on + strand, within AMB_RS20895 at 4537.054 kb on + strand, within AMB_RS20895 at 4537.055 kb on - strand, within AMB_RS20895 at 4537.126 kb on + strand, within AMB_RS20895 at 4537.126 kb on + strand, within AMB_RS20895 at 4537.126 kb on + strand, within AMB_RS20895 at 4537.127 kb on - strand, within AMB_RS20895 at 4537.127 kb on - strand, within AMB_RS20895 at 4537.127 kb on - strand, within AMB_RS20895 at 4537.423 kb on + strand at 4537.423 kb on + strand at 4537.423 kb on + strand at 4537.424 kb on - strand at 4537.424 kb on - strand at 4537.501 kb on + strand at 4537.502 kb on - strand at 4537.579 kb on + strand at 4537.580 kb on - strand at 4537.600 kb on + strand at 4537.757 kb on + strand at 4537.757 kb on + strand at 4537.757 kb on + strand at 4537.758 kb on - strand at 4537.959 kb on + strand, within AMB_RS20900 at 4537.959 kb on + strand, within AMB_RS20900 at 4537.959 kb on + strand, within AMB_RS20900 at 4538.269 kb on + strand, within AMB_RS20900 at 4538.270 kb on - strand, within AMB_RS20900
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 4,535,852 + AMB_RS20890 0.32 -0.8 4,535,929 - AMB_RS20890 0.37 -0.2 4,535,929 - AMB_RS20890 0.37 +0.2 4,535,931 - AMB_RS20890 0.37 -0.7 4,536,207 + AMB_RS20890 0.56 +1.2 4,536,207 + AMB_RS20890 0.56 +0.4 4,536,208 - AMB_RS20890 0.56 -0.4 4,536,208 - AMB_RS20890 0.56 +0.2 4,536,208 - AMB_RS20890 0.56 -2.4 4,536,375 + AMB_RS20890 0.68 +1.1 4,536,375 + AMB_RS20890 0.68 +0.0 4,536,375 + AMB_RS20890 0.68 -0.4 4,536,376 - AMB_RS20890 0.68 -0.3 4,536,376 - AMB_RS20890 0.68 -0.2 4,536,376 - AMB_RS20890 0.68 -0.4 4,536,376 - AMB_RS20890 0.68 +0.8 4,536,377 + AMB_RS20890 0.68 -0.8 4,536,377 + AMB_RS20890 0.68 -0.4 4,536,378 - AMB_RS20890 0.68 -0.7 4,536,378 - AMB_RS20890 0.68 +0.0 4,536,378 - AMB_RS20890 0.68 -0.5 4,536,399 + AMB_RS20890 0.70 -1.9 4,536,399 + AMB_RS20890 0.70 -0.0 4,536,399 + AMB_RS20890 0.70 -0.8 4,536,399 + AMB_RS20890 0.70 +0.4 4,536,399 + AMB_RS20890 0.70 +0.5 4,536,399 + AMB_RS20890 0.70 +0.3 4,536,399 + AMB_RS20890 0.70 -0.5 4,536,399 + AMB_RS20890 0.70 -1.0 4,536,400 - AMB_RS20890 0.70 +0.2 4,536,400 - AMB_RS20890 0.70 -0.0 4,536,400 - AMB_RS20890 0.70 +0.7 4,536,400 - AMB_RS20890 0.70 -0.1 4,536,660 + AMB_RS20890 0.88 -1.5 4,536,660 + AMB_RS20890 0.88 -1.6 4,536,660 + AMB_RS20890 0.88 -0.4 4,536,661 - AMB_RS20890 0.88 +0.3 4,536,661 - AMB_RS20890 0.88 -0.0 4,536,678 + AMB_RS20890 0.89 -0.6 4,536,819 + +0.2 4,536,819 + -0.3 4,536,819 + +0.0 4,536,820 - +0.0 4,536,831 + -0.5 4,536,832 - -1.8 4,536,846 + -0.4 4,536,846 + -0.3 4,536,847 - -0.2 4,536,847 - -0.8 4,536,917 - AMB_RS20895 0.14 -2.8 4,536,917 - AMB_RS20895 0.14 +0.0 4,537,047 + AMB_RS20895 0.34 +0.3 4,537,047 + AMB_RS20895 0.34 +0.2 4,537,047 + AMB_RS20895 0.34 +0.5 4,537,047 + AMB_RS20895 0.34 -0.0 4,537,047 + AMB_RS20895 0.34 -0.5 4,537,047 + AMB_RS20895 0.34 +2.5 4,537,047 + AMB_RS20895 0.34 +0.7 4,537,047 + AMB_RS20895 0.34 -0.4 4,537,047 + AMB_RS20895 0.34 +0.0 4,537,047 + AMB_RS20895 0.34 +0.6 4,537,048 - AMB_RS20895 0.34 +3.8 4,537,048 - AMB_RS20895 0.34 -1.6 4,537,048 - AMB_RS20895 0.34 +1.1 4,537,048 - AMB_RS20895 0.34 -0.3 4,537,054 + AMB_RS20895 0.35 +0.0 4,537,054 + AMB_RS20895 0.35 -0.4 4,537,054 + AMB_RS20895 0.35 -0.2 4,537,055 - AMB_RS20895 0.35 -0.0 4,537,126 + AMB_RS20895 0.46 -0.4 4,537,126 + AMB_RS20895 0.46 -0.0 4,537,126 + AMB_RS20895 0.46 -0.1 4,537,127 - AMB_RS20895 0.46 +0.4 4,537,127 - AMB_RS20895 0.46 -0.0 4,537,127 - AMB_RS20895 0.46 -1.9 4,537,423 + -0.1 4,537,423 + +0.3 4,537,423 + -0.4 4,537,424 - -0.1 4,537,424 - +0.0 4,537,501 + +0.1 4,537,502 - -0.4 4,537,579 + -0.6 4,537,580 - -0.6 4,537,600 + +0.6 4,537,757 + -2.1 4,537,757 + -1.6 4,537,757 + -1.1 4,537,758 - -0.1 4,537,959 + AMB_RS20900 0.17 -0.9 4,537,959 + AMB_RS20900 0.17 +0.4 4,537,959 + AMB_RS20900 0.17 -0.7 4,538,269 + AMB_RS20900 0.28 +0.2 4,538,270 - AMB_RS20900 0.28 +0.5
Or see this region's nucleotide sequence