Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20050 and AMB_RS20055 are separated by 319 nucleotides AMB_RS20055 and AMB_RS20060 overlap by 17 nucleotides AMB_RS20060 and AMB_RS20065 are separated by 0 nucleotides
AMB_RS20050: AMB_RS20050 - dihydrolipoyl dehydrogenase, at 4,373,380 to 4,374,789
_RS20050
AMB_RS20055: AMB_RS20055 - MerR family transcriptional regulator, at 4,375,109 to 4,375,480
_RS20055
AMB_RS20060: AMB_RS20060 - 4-carboxymuconolactone decarboxylase, at 4,375,464 to 4,375,865
_RS20060
AMB_RS20065: AMB_RS20065 - hemerythrin, at 4,375,866 to 4,376,312
_RS20065
Position (kb) 4375
4376 Strain fitness (log2 ratio) -1
0
1 at 4374.906 kb on + strand at 4374.907 kb on - strand at 4375.053 kb on + strand at 4375.084 kb on - strand at 4375.084 kb on - strand at 4375.166 kb on + strand, within AMB_RS20055 at 4375.167 kb on - strand, within AMB_RS20055 at 4375.223 kb on + strand, within AMB_RS20055 at 4375.224 kb on - strand, within AMB_RS20055 at 4375.304 kb on + strand, within AMB_RS20055 at 4375.305 kb on - strand, within AMB_RS20055 at 4375.305 kb on - strand, within AMB_RS20055 at 4375.442 kb on + strand, within AMB_RS20055 at 4375.443 kb on - strand at 4375.443 kb on - strand at 4375.584 kb on + strand, within AMB_RS20060 at 4375.584 kb on + strand, within AMB_RS20060 at 4375.585 kb on - strand, within AMB_RS20060 at 4375.610 kb on + strand, within AMB_RS20060 at 4375.610 kb on + strand, within AMB_RS20060 at 4375.614 kb on + strand, within AMB_RS20060 at 4375.614 kb on + strand, within AMB_RS20060 at 4375.614 kb on + strand, within AMB_RS20060 at 4375.614 kb on + strand, within AMB_RS20060 at 4375.614 kb on + strand, within AMB_RS20060 at 4375.614 kb on + strand, within AMB_RS20060 at 4375.614 kb on + strand, within AMB_RS20060 at 4375.614 kb on + strand, within AMB_RS20060 at 4375.615 kb on - strand, within AMB_RS20060 at 4375.615 kb on - strand, within AMB_RS20060 at 4375.615 kb on - strand, within AMB_RS20060 at 4375.615 kb on - strand, within AMB_RS20060 at 4375.615 kb on - strand, within AMB_RS20060 at 4375.615 kb on - strand, within AMB_RS20060 at 4375.724 kb on + strand, within AMB_RS20060 at 4375.724 kb on + strand, within AMB_RS20060 at 4375.779 kb on + strand, within AMB_RS20060 at 4375.779 kb on + strand, within AMB_RS20060 at 4375.779 kb on + strand, within AMB_RS20060 at 4375.780 kb on - strand, within AMB_RS20060 at 4375.780 kb on - strand, within AMB_RS20060 at 4375.925 kb on - strand, within AMB_RS20065 at 4375.925 kb on - strand, within AMB_RS20065 at 4376.041 kb on + strand, within AMB_RS20065 at 4376.041 kb on + strand, within AMB_RS20065 at 4376.042 kb on - strand, within AMB_RS20065 at 4376.053 kb on + strand, within AMB_RS20065 at 4376.053 kb on + strand, within AMB_RS20065 at 4376.053 kb on + strand, within AMB_RS20065 at 4376.312 kb on + strand at 4376.312 kb on + strand at 4376.313 kb on - strand at 4376.313 kb on - strand at 4376.322 kb on - strand at 4376.322 kb on - strand at 4376.364 kb on + strand at 4376.364 kb on + strand at 4376.364 kb on + strand at 4376.364 kb on + strand at 4376.365 kb on - strand at 4376.365 kb on - strand at 4376.376 kb on - strand at 4376.377 kb on + strand at 4376.377 kb on + strand at 4376.378 kb on - strand at 4376.378 kb on - strand at 4376.398 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 4,374,906 + -1.7 4,374,907 - +0.3 4,375,053 + -0.4 4,375,084 - -0.5 4,375,084 - -0.2 4,375,166 + AMB_RS20055 0.15 -1.6 4,375,167 - AMB_RS20055 0.16 -1.1 4,375,223 + AMB_RS20055 0.31 -1.2 4,375,224 - AMB_RS20055 0.31 -1.3 4,375,304 + AMB_RS20055 0.52 -0.5 4,375,305 - AMB_RS20055 0.53 -0.7 4,375,305 - AMB_RS20055 0.53 +0.1 4,375,442 + AMB_RS20055 0.90 -0.2 4,375,443 - +0.2 4,375,443 - -0.4 4,375,584 + AMB_RS20060 0.30 +0.9 4,375,584 + AMB_RS20060 0.30 -1.2 4,375,585 - AMB_RS20060 0.30 -1.1 4,375,610 + AMB_RS20060 0.36 -0.5 4,375,610 + AMB_RS20060 0.36 -0.2 4,375,614 + AMB_RS20060 0.37 -0.1 4,375,614 + AMB_RS20060 0.37 -0.3 4,375,614 + AMB_RS20060 0.37 -1.6 4,375,614 + AMB_RS20060 0.37 +1.0 4,375,614 + AMB_RS20060 0.37 -0.4 4,375,614 + AMB_RS20060 0.37 +0.5 4,375,614 + AMB_RS20060 0.37 -0.5 4,375,614 + AMB_RS20060 0.37 -0.4 4,375,615 - AMB_RS20060 0.38 -0.7 4,375,615 - AMB_RS20060 0.38 -0.5 4,375,615 - AMB_RS20060 0.38 -1.4 4,375,615 - AMB_RS20060 0.38 +0.8 4,375,615 - AMB_RS20060 0.38 +0.1 4,375,615 - AMB_RS20060 0.38 +1.6 4,375,724 + AMB_RS20060 0.65 +0.4 4,375,724 + AMB_RS20060 0.65 -0.2 4,375,779 + AMB_RS20060 0.78 +0.4 4,375,779 + AMB_RS20060 0.78 +1.5 4,375,779 + AMB_RS20060 0.78 -1.2 4,375,780 - AMB_RS20060 0.79 -0.1 4,375,780 - AMB_RS20060 0.79 -1.6 4,375,925 - AMB_RS20065 0.13 +1.1 4,375,925 - AMB_RS20065 0.13 +0.6 4,376,041 + AMB_RS20065 0.39 -0.2 4,376,041 + AMB_RS20065 0.39 -0.9 4,376,042 - AMB_RS20065 0.39 -0.3 4,376,053 + AMB_RS20065 0.42 -0.1 4,376,053 + AMB_RS20065 0.42 -0.1 4,376,053 + AMB_RS20065 0.42 -0.6 4,376,312 + +0.5 4,376,312 + -0.1 4,376,313 - -0.3 4,376,313 - -0.9 4,376,322 - -0.4 4,376,322 - -0.6 4,376,364 + +0.2 4,376,364 + +0.3 4,376,364 + +0.4 4,376,364 + +0.6 4,376,365 - +0.4 4,376,365 - -0.1 4,376,376 - +0.4 4,376,377 + +0.1 4,376,377 + -0.6 4,376,378 - +0.2 4,376,378 - +0.4 4,376,398 + -0.6
Or see this region's nucleotide sequence