Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19795 and AMB_RS19800 are separated by 135 nucleotides AMB_RS19800 and AMB_RS19805 are separated by 71 nucleotides AMB_RS19805 and AMB_RS19810 are separated by 127 nucleotides AMB_RS19810 and AMB_RS19815 are separated by 22 nucleotides
AMB_RS19795: AMB_RS19795 - hypothetical protein, at 4,325,234 to 4,325,983
_RS19795
AMB_RS19800: AMB_RS19800 - Hcp1 family type VI secretion system effector, at 4,326,119 to 4,326,601
_RS19800
AMB_RS19805: AMB_RS19805 - BolA family transcriptional regulator, at 4,326,673 to 4,326,954
_RS19805
AMB_RS19810: AMB_RS19810 - J domain-containing protein, at 4,327,082 to 4,327,666
_RS19810
AMB_RS19815: AMB_RS19815 - cobaltochelatase subunit CobS, at 4,327,689 to 4,328,690
_RS19815
Position (kb) 4326
4327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4325.759 kb on + strand, within AMB_RS19795 at 4325.806 kb on - strand, within AMB_RS19795 at 4326.070 kb on - strand at 4326.299 kb on + strand, within AMB_RS19800 at 4326.299 kb on + strand, within AMB_RS19800 at 4326.300 kb on - strand, within AMB_RS19800 at 4326.300 kb on - strand, within AMB_RS19800 at 4326.407 kb on + strand, within AMB_RS19800 at 4326.501 kb on - strand, within AMB_RS19800 at 4326.501 kb on - strand, within AMB_RS19800 at 4326.501 kb on - strand, within AMB_RS19800 at 4326.521 kb on + strand, within AMB_RS19800 at 4326.521 kb on + strand, within AMB_RS19800 at 4326.521 kb on + strand, within AMB_RS19800 at 4326.522 kb on - strand, within AMB_RS19800 at 4326.522 kb on - strand, within AMB_RS19800 at 4326.522 kb on - strand, within AMB_RS19800 at 4326.522 kb on - strand, within AMB_RS19800 at 4326.674 kb on + strand at 4326.674 kb on + strand at 4326.674 kb on + strand at 4326.675 kb on - strand at 4326.675 kb on - strand at 4326.675 kb on - strand at 4326.675 kb on - strand at 4326.675 kb on - strand at 4326.675 kb on - strand at 4326.961 kb on - strand at 4327.039 kb on - strand at 4327.039 kb on - strand at 4327.039 kb on - strand at 4327.039 kb on - strand at 4327.081 kb on + strand at 4327.081 kb on + strand at 4327.238 kb on + strand, within AMB_RS19810 at 4327.241 kb on + strand, within AMB_RS19810 at 4327.241 kb on + strand, within AMB_RS19810 at 4327.289 kb on + strand, within AMB_RS19810 at 4327.289 kb on + strand, within AMB_RS19810 at 4327.289 kb on + strand, within AMB_RS19810 at 4327.292 kb on + strand, within AMB_RS19810 at 4327.292 kb on + strand, within AMB_RS19810 at 4327.400 kb on + strand, within AMB_RS19810 at 4327.402 kb on + strand, within AMB_RS19810 at 4327.402 kb on + strand, within AMB_RS19810 at 4327.402 kb on + strand, within AMB_RS19810 at 4327.547 kb on + strand, within AMB_RS19810 at 4327.644 kb on + strand at 4327.644 kb on + strand at 4327.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 4,325,759 + AMB_RS19795 0.70 -0.3 4,325,806 - AMB_RS19795 0.76 -1.4 4,326,070 - -0.5 4,326,299 + AMB_RS19800 0.37 -0.7 4,326,299 + AMB_RS19800 0.37 -0.4 4,326,300 - AMB_RS19800 0.37 -0.2 4,326,300 - AMB_RS19800 0.37 -0.8 4,326,407 + AMB_RS19800 0.60 -0.6 4,326,501 - AMB_RS19800 0.79 -0.3 4,326,501 - AMB_RS19800 0.79 -1.0 4,326,501 - AMB_RS19800 0.79 -0.5 4,326,521 + AMB_RS19800 0.83 +0.2 4,326,521 + AMB_RS19800 0.83 -0.6 4,326,521 + AMB_RS19800 0.83 +0.2 4,326,522 - AMB_RS19800 0.83 +0.2 4,326,522 - AMB_RS19800 0.83 +1.3 4,326,522 - AMB_RS19800 0.83 -0.5 4,326,522 - AMB_RS19800 0.83 -1.8 4,326,674 + -2.5 4,326,674 + -0.4 4,326,674 + +0.1 4,326,675 - -0.1 4,326,675 - -0.5 4,326,675 - +0.3 4,326,675 - -0.1 4,326,675 - -0.2 4,326,675 - -0.1 4,326,961 - -2.0 4,327,039 - +0.0 4,327,039 - +2.4 4,327,039 - +0.0 4,327,039 - +0.4 4,327,081 + -0.4 4,327,081 + +0.8 4,327,238 + AMB_RS19810 0.27 -0.6 4,327,241 + AMB_RS19810 0.27 -0.4 4,327,241 + AMB_RS19810 0.27 -1.1 4,327,289 + AMB_RS19810 0.35 -0.6 4,327,289 + AMB_RS19810 0.35 -0.3 4,327,289 + AMB_RS19810 0.35 -0.3 4,327,292 + AMB_RS19810 0.36 -0.1 4,327,292 + AMB_RS19810 0.36 -0.2 4,327,400 + AMB_RS19810 0.54 -0.6 4,327,402 + AMB_RS19810 0.55 -3.3 4,327,402 + AMB_RS19810 0.55 -0.9 4,327,402 + AMB_RS19810 0.55 +0.4 4,327,547 + AMB_RS19810 0.79 +0.1 4,327,644 + -0.2 4,327,644 + +1.9 4,327,664 + -2.0
Or see this region's nucleotide sequence