Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09120

Experiment: 30_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS09110 and AMB_RS09115 are separated by 127 nucleotidesAMB_RS09115 and AMB_RS09120 overlap by 4 nucleotidesAMB_RS09120 and AMB_RS09125 overlap by 1 nucleotidesAMB_RS09125 and AMB_RS09130 are separated by 178 nucleotides AMB_RS09110: AMB_RS09110 - diguanylate cyclase response regulator, at 1,939,081 to 1,940,949 _RS09110 AMB_RS09115: AMB_RS09115 - hypothetical protein, at 1,941,077 to 1,941,403 _RS09115 AMB_RS09120: AMB_RS09120 - ABC transporter ATP-binding protein, at 1,941,400 to 1,942,113 _RS09120 AMB_RS09125: AMB_RS09125 - ABC transporter ATP-binding protein, at 1,942,113 to 1,942,886 _RS09125 AMB_RS09130: AMB_RS09130 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 1,943,065 to 1,944,312 _RS09130 Position (kb) 1941 1942 1943Strain fitness (log2 ratio) -3 -2 -1 0 1at 1941.001 kb on - strandat 1941.078 kb on + strandat 1941.078 kb on + strandat 1941.078 kb on + strandat 1941.078 kb on + strandat 1941.079 kb on - strandat 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.115 kb on - strand, within AMB_RS09115at 1941.115 kb on - strand, within AMB_RS09115at 1941.285 kb on + strand, within AMB_RS09115at 1941.285 kb on + strand, within AMB_RS09115at 1941.285 kb on + strand, within AMB_RS09115at 1941.286 kb on - strand, within AMB_RS09115at 1941.286 kb on - strand, within AMB_RS09115at 1941.423 kb on - strandat 1941.423 kb on - strandat 1941.500 kb on + strand, within AMB_RS09120at 1941.500 kb on + strand, within AMB_RS09120at 1941.500 kb on + strand, within AMB_RS09120at 1941.500 kb on + strand, within AMB_RS09120at 1941.501 kb on - strand, within AMB_RS09120at 1942.147 kb on + strandat 1942.148 kb on - strandat 1942.230 kb on - strand, within AMB_RS09125at 1942.230 kb on - strand, within AMB_RS09125at 1942.259 kb on + strand, within AMB_RS09125at 1942.259 kb on + strand, within AMB_RS09125at 1942.259 kb on + strand, within AMB_RS09125at 1942.260 kb on - strand, within AMB_RS09125at 1942.432 kb on + strand, within AMB_RS09125at 1942.589 kb on + strand, within AMB_RS09125at 1942.589 kb on + strand, within AMB_RS09125at 1942.589 kb on + strand, within AMB_RS09125at 1942.589 kb on + strand, within AMB_RS09125at 1942.589 kb on + strand, within AMB_RS09125at 1942.590 kb on - strand, within AMB_RS09125at 1942.590 kb on - strand, within AMB_RS09125at 1942.590 kb on - strand, within AMB_RS09125at 1942.590 kb on - strand, within AMB_RS09125at 1942.590 kb on - strand, within AMB_RS09125at 1942.759 kb on + strand, within AMB_RS09125

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_3
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1,941,001 - -1.2
1,941,078 + +1.4
1,941,078 + +0.1
1,941,078 + +0.5
1,941,078 + -0.4
1,941,079 - +1.1
1,941,114 + AMB_RS09115 0.11 -0.9
1,941,114 + AMB_RS09115 0.11 -1.8
1,941,114 + AMB_RS09115 0.11 -0.1
1,941,114 + AMB_RS09115 0.11 +0.8
1,941,114 + AMB_RS09115 0.11 +0.7
1,941,114 + AMB_RS09115 0.11 -0.3
1,941,115 - AMB_RS09115 0.12 +0.2
1,941,115 - AMB_RS09115 0.12 -0.2
1,941,285 + AMB_RS09115 0.64 +0.2
1,941,285 + AMB_RS09115 0.64 +0.2
1,941,285 + AMB_RS09115 0.64 -0.4
1,941,286 - AMB_RS09115 0.64 -3.1
1,941,286 - AMB_RS09115 0.64 +1.6
1,941,423 - -1.2
1,941,423 - +0.8
1,941,500 + AMB_RS09120 0.14 +0.1
1,941,500 + AMB_RS09120 0.14 -1.5
1,941,500 + AMB_RS09120 0.14 -0.4
1,941,500 + AMB_RS09120 0.14 -0.4
1,941,501 - AMB_RS09120 0.14 -1.0
1,942,147 + +0.0
1,942,148 - +0.3
1,942,230 - AMB_RS09125 0.15 -1.7
1,942,230 - AMB_RS09125 0.15 +0.2
1,942,259 + AMB_RS09125 0.19 +0.8
1,942,259 + AMB_RS09125 0.19 +0.2
1,942,259 + AMB_RS09125 0.19 -1.2
1,942,260 - AMB_RS09125 0.19 +0.0
1,942,432 + AMB_RS09125 0.41 -0.7
1,942,589 + AMB_RS09125 0.61 -0.2
1,942,589 + AMB_RS09125 0.61 -0.1
1,942,589 + AMB_RS09125 0.61 -0.7
1,942,589 + AMB_RS09125 0.61 -0.5
1,942,589 + AMB_RS09125 0.61 -0.8
1,942,590 - AMB_RS09125 0.62 -0.3
1,942,590 - AMB_RS09125 0.62 +0.7
1,942,590 - AMB_RS09125 0.62 +0.7
1,942,590 - AMB_RS09125 0.62 -0.5
1,942,590 - AMB_RS09125 0.62 +0.3
1,942,759 + AMB_RS09125 0.83 -0.2

Or see this region's nucleotide sequence