Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05840

Experiment: 30_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05830 and AMB_RS05835 are separated by 17 nucleotidesAMB_RS05835 and AMB_RS05840 are separated by 17 nucleotidesAMB_RS05840 and AMB_RS05845 are separated by 11 nucleotidesAMB_RS05845 and AMB_RS05850 are separated by 10 nucleotides AMB_RS05830: AMB_RS05830 - ATPase AAA, at 1,230,756 to 1,231,592 _RS05830 AMB_RS05835: AMB_RS05835 - hypothetical protein, at 1,231,610 to 1,232,353 _RS05835 AMB_RS05840: AMB_RS05840 - hypothetical protein, at 1,232,371 to 1,232,598 _RS05840 AMB_RS05845: AMB_RS05845 - hypothetical protein, at 1,232,610 to 1,232,966 _RS05845 AMB_RS05850: AMB_RS05850 - hypothetical protein, at 1,232,977 to 1,233,774 _RS05850 Position (kb) 1232 1233Strain fitness (log2 ratio) -3 -2 -1 0 1at 1231.403 kb on + strand, within AMB_RS05830at 1231.404 kb on - strand, within AMB_RS05830at 1231.404 kb on - strand, within AMB_RS05830at 1231.404 kb on - strand, within AMB_RS05830at 1231.404 kb on - strand, within AMB_RS05830at 1231.404 kb on - strand, within AMB_RS05830at 1231.404 kb on - strand, within AMB_RS05830at 1231.616 kb on + strandat 1231.616 kb on + strandat 1231.894 kb on + strand, within AMB_RS05835at 1232.061 kb on - strand, within AMB_RS05835at 1232.111 kb on + strand, within AMB_RS05835at 1232.111 kb on + strand, within AMB_RS05835at 1232.112 kb on - strand, within AMB_RS05835at 1232.370 kb on + strandat 1232.370 kb on + strandat 1232.370 kb on + strandat 1232.371 kb on - strandat 1232.371 kb on - strandat 1232.371 kb on - strandat 1232.371 kb on - strandat 1232.640 kb on + strandat 1232.641 kb on - strandat 1232.668 kb on - strand, within AMB_RS05845at 1232.889 kb on + strand, within AMB_RS05845at 1232.890 kb on - strand, within AMB_RS05845at 1233.010 kb on + strandat 1233.109 kb on + strand, within AMB_RS05850at 1233.109 kb on + strand, within AMB_RS05850at 1233.110 kb on - strand, within AMB_RS05850at 1233.110 kb on - strand, within AMB_RS05850at 1233.157 kb on + strand, within AMB_RS05850at 1233.158 kb on - strand, within AMB_RS05850at 1233.163 kb on + strand, within AMB_RS05850at 1233.392 kb on - strand, within AMB_RS05850at 1233.478 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_3
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1,231,403 + AMB_RS05830 0.77 -3.6
1,231,404 - AMB_RS05830 0.77 -1.2
1,231,404 - AMB_RS05830 0.77 +0.5
1,231,404 - AMB_RS05830 0.77 +0.1
1,231,404 - AMB_RS05830 0.77 -1.0
1,231,404 - AMB_RS05830 0.77 -1.2
1,231,404 - AMB_RS05830 0.77 +0.0
1,231,616 + -0.5
1,231,616 + +0.8
1,231,894 + AMB_RS05835 0.38 -0.5
1,232,061 - AMB_RS05835 0.61 -0.2
1,232,111 + AMB_RS05835 0.67 -0.4
1,232,111 + AMB_RS05835 0.67 -0.7
1,232,112 - AMB_RS05835 0.67 -0.4
1,232,370 + -0.5
1,232,370 + -0.5
1,232,370 + -0.9
1,232,371 - -0.6
1,232,371 - +0.3
1,232,371 - -0.3
1,232,371 - +0.5
1,232,640 + +0.5
1,232,641 - +0.1
1,232,668 - AMB_RS05845 0.16 +0.6
1,232,889 + AMB_RS05845 0.78 -0.5
1,232,890 - AMB_RS05845 0.78 +0.2
1,233,010 + -1.5
1,233,109 + AMB_RS05850 0.17 +0.1
1,233,109 + AMB_RS05850 0.17 +1.2
1,233,110 - AMB_RS05850 0.17 -0.1
1,233,110 - AMB_RS05850 0.17 -0.3
1,233,157 + AMB_RS05850 0.23 -0.4
1,233,158 - AMB_RS05850 0.23 +0.6
1,233,163 + AMB_RS05850 0.23 -0.7
1,233,392 - AMB_RS05850 0.52 -0.8
1,233,478 + AMB_RS05850 0.63 -0.8
1,233,508 + AMB_RS05850 0.67 -0.8
1,233,508 + AMB_RS05850 0.67 -0.8
1,233,508 + AMB_RS05850 0.67 +0.2
1,233,508 + AMB_RS05850 0.67 -0.3
1,233,508 + AMB_RS05850 0.67 -0.0
1,233,508 + AMB_RS05850 0.67 -0.5
1,233,509 - AMB_RS05850 0.67 -0.0
1,233,509 - AMB_RS05850 0.67 +0.2
1,233,509 - AMB_RS05850 0.67 -0.7
1,233,509 - AMB_RS05850 0.67 -0.2
1,233,509 - AMB_RS05850 0.67 -0.3

Or see this region's nucleotide sequence