Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04550 and AMB_RS04555 overlap by 4 nucleotides AMB_RS04555 and AMB_RS04560 are separated by 87 nucleotides AMB_RS04560 and AMB_RS04565 are separated by 104 nucleotides
AMB_RS04550: AMB_RS04550 - C4-dicarboxylate ABC transporter permease, at 952,704 to 953,987
_RS04550
AMB_RS04555: AMB_RS04555 - TRAP transporter small permease, at 953,984 to 954,682
_RS04555
AMB_RS04560: AMB_RS04560 - C4-dicarboxylate ABC transporter, at 954,770 to 955,783
_RS04560
AMB_RS04565: AMB_RS04565 - PAS domain-containing sensor histidine kinase, at 955,888 to 957,855
_RS04565
Position (kb) 954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 954.225 kb on + strand, within AMB_RS04555 at 954.226 kb on - strand, within AMB_RS04555 at 954.273 kb on + strand, within AMB_RS04555 at 954.315 kb on + strand, within AMB_RS04555 at 954.316 kb on - strand, within AMB_RS04555 at 954.398 kb on + strand, within AMB_RS04555 at 954.399 kb on - strand, within AMB_RS04555 at 954.474 kb on - strand, within AMB_RS04555 at 954.474 kb on - strand, within AMB_RS04555 at 954.480 kb on + strand, within AMB_RS04555 at 954.481 kb on - strand, within AMB_RS04555 at 954.567 kb on + strand, within AMB_RS04555 at 954.567 kb on + strand, within AMB_RS04555 at 954.567 kb on + strand, within AMB_RS04555 at 954.568 kb on - strand, within AMB_RS04555 at 954.591 kb on + strand, within AMB_RS04555 at 954.592 kb on - strand, within AMB_RS04555 at 954.592 kb on - strand, within AMB_RS04555 at 954.804 kb on + strand at 954.804 kb on + strand at 954.805 kb on - strand at 955.080 kb on + strand, within AMB_RS04560 at 955.081 kb on - strand, within AMB_RS04560 at 955.081 kb on - strand, within AMB_RS04560 at 955.112 kb on + strand, within AMB_RS04560 at 955.112 kb on + strand, within AMB_RS04560 at 955.113 kb on - strand, within AMB_RS04560 at 955.113 kb on - strand, within AMB_RS04560 at 955.113 kb on - strand, within AMB_RS04560 at 955.134 kb on + strand, within AMB_RS04560 at 955.134 kb on + strand, within AMB_RS04560 at 955.134 kb on + strand, within AMB_RS04560 at 955.134 kb on + strand, within AMB_RS04560 at 955.134 kb on + strand, within AMB_RS04560 at 955.134 kb on + strand, within AMB_RS04560 at 955.135 kb on - strand, within AMB_RS04560 at 955.135 kb on - strand, within AMB_RS04560 at 955.135 kb on - strand, within AMB_RS04560 at 955.135 kb on - strand, within AMB_RS04560 at 955.135 kb on - strand, within AMB_RS04560 at 955.135 kb on - strand, within AMB_RS04560 at 955.135 kb on - strand, within AMB_RS04560 at 955.135 kb on - strand, within AMB_RS04560 at 955.191 kb on + strand, within AMB_RS04560 at 955.191 kb on + strand, within AMB_RS04560 at 955.192 kb on - strand, within AMB_RS04560 at 955.350 kb on + strand, within AMB_RS04560 at 955.351 kb on - strand, within AMB_RS04560 at 955.351 kb on - strand, within AMB_RS04560 at 955.452 kb on + strand, within AMB_RS04560 at 955.452 kb on + strand, within AMB_RS04560 at 955.452 kb on + strand, within AMB_RS04560 at 955.452 kb on + strand, within AMB_RS04560 at 955.452 kb on + strand, within AMB_RS04560 at 955.453 kb on - strand, within AMB_RS04560 at 955.453 kb on - strand, within AMB_RS04560 at 955.453 kb on - strand, within AMB_RS04560 at 955.453 kb on - strand, within AMB_RS04560 at 955.453 kb on - strand, within AMB_RS04560 at 955.453 kb on - strand, within AMB_RS04560 at 955.453 kb on - strand, within AMB_RS04560 at 955.453 kb on - strand, within AMB_RS04560 at 955.453 kb on - strand, within AMB_RS04560 at 955.453 kb on - strand, within AMB_RS04560 at 955.569 kb on + strand, within AMB_RS04560 at 955.569 kb on + strand, within AMB_RS04560 at 955.569 kb on + strand, within AMB_RS04560 at 955.570 kb on - strand, within AMB_RS04560 at 955.570 kb on - strand, within AMB_RS04560 at 955.570 kb on - strand, within AMB_RS04560 at 955.570 kb on - strand, within AMB_RS04560 at 955.587 kb on + strand, within AMB_RS04560 at 955.587 kb on + strand, within AMB_RS04560 at 955.642 kb on - strand, within AMB_RS04560 at 955.786 kb on + strand at 955.786 kb on + strand at 955.787 kb on - strand at 955.787 kb on - strand at 955.787 kb on - strand at 955.817 kb on + strand at 955.817 kb on + strand at 955.827 kb on + strand at 955.827 kb on + strand at 955.827 kb on + strand at 955.828 kb on - strand at 955.828 kb on - strand at 955.828 kb on - strand at 955.830 kb on + strand at 955.830 kb on + strand at 955.830 kb on + strand at 955.831 kb on - strand at 955.831 kb on - strand at 955.832 kb on + strand at 955.833 kb on - strand at 955.833 kb on - strand at 955.833 kb on - strand at 955.833 kb on - strand at 955.887 kb on + strand at 955.887 kb on + strand at 955.887 kb on + strand at 955.888 kb on - strand at 956.062 kb on + strand at 956.063 kb on - strand at 956.063 kb on - strand at 956.063 kb on - strand at 956.323 kb on + strand, within AMB_RS04565 at 956.324 kb on - strand, within AMB_RS04565 at 956.335 kb on + strand, within AMB_RS04565 at 956.336 kb on - strand, within AMB_RS04565 at 956.336 kb on - strand, within AMB_RS04565 at 956.336 kb on - strand, within AMB_RS04565 at 956.376 kb on - strand, within AMB_RS04565 at 956.557 kb on + strand, within AMB_RS04565 at 956.557 kb on + strand, within AMB_RS04565 at 956.557 kb on + strand, within AMB_RS04565 at 956.558 kb on - strand, within AMB_RS04565 at 956.558 kb on - strand, within AMB_RS04565 at 956.611 kb on + strand, within AMB_RS04565 at 956.612 kb on - strand, within AMB_RS04565
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 954,225 + AMB_RS04555 0.34 +0.4 954,226 - AMB_RS04555 0.35 +0.3 954,273 + AMB_RS04555 0.41 +0.3 954,315 + AMB_RS04555 0.47 -0.6 954,316 - AMB_RS04555 0.47 +0.1 954,398 + AMB_RS04555 0.59 -1.1 954,399 - AMB_RS04555 0.59 -0.9 954,474 - AMB_RS04555 0.70 +0.3 954,474 - AMB_RS04555 0.70 +1.2 954,480 + AMB_RS04555 0.71 -0.6 954,481 - AMB_RS04555 0.71 -0.3 954,567 + AMB_RS04555 0.83 -0.3 954,567 + AMB_RS04555 0.83 +0.2 954,567 + AMB_RS04555 0.83 -1.7 954,568 - AMB_RS04555 0.84 -0.1 954,591 + AMB_RS04555 0.87 -0.4 954,592 - AMB_RS04555 0.87 -0.8 954,592 - AMB_RS04555 0.87 -0.2 954,804 + +0.6 954,804 + -1.0 954,805 - -0.0 955,080 + AMB_RS04560 0.31 +1.4 955,081 - AMB_RS04560 0.31 +0.3 955,081 - AMB_RS04560 0.31 -0.3 955,112 + AMB_RS04560 0.34 +0.3 955,112 + AMB_RS04560 0.34 -0.2 955,113 - AMB_RS04560 0.34 +0.7 955,113 - AMB_RS04560 0.34 +0.5 955,113 - AMB_RS04560 0.34 -0.3 955,134 + AMB_RS04560 0.36 +0.0 955,134 + AMB_RS04560 0.36 +0.5 955,134 + AMB_RS04560 0.36 -0.3 955,134 + AMB_RS04560 0.36 -0.2 955,134 + AMB_RS04560 0.36 +0.2 955,134 + AMB_RS04560 0.36 +0.8 955,135 - AMB_RS04560 0.36 +0.8 955,135 - AMB_RS04560 0.36 +0.3 955,135 - AMB_RS04560 0.36 +0.3 955,135 - AMB_RS04560 0.36 +0.4 955,135 - AMB_RS04560 0.36 +0.1 955,135 - AMB_RS04560 0.36 +0.1 955,135 - AMB_RS04560 0.36 +0.2 955,135 - AMB_RS04560 0.36 +0.1 955,191 + AMB_RS04560 0.42 +0.2 955,191 + AMB_RS04560 0.42 +0.7 955,192 - AMB_RS04560 0.42 +0.3 955,350 + AMB_RS04560 0.57 +0.2 955,351 - AMB_RS04560 0.57 +1.0 955,351 - AMB_RS04560 0.57 +0.1 955,452 + AMB_RS04560 0.67 -0.6 955,452 + AMB_RS04560 0.67 +0.6 955,452 + AMB_RS04560 0.67 +0.4 955,452 + AMB_RS04560 0.67 -0.0 955,452 + AMB_RS04560 0.67 -0.2 955,453 - AMB_RS04560 0.67 +0.2 955,453 - AMB_RS04560 0.67 -1.5 955,453 - AMB_RS04560 0.67 +0.4 955,453 - AMB_RS04560 0.67 -0.9 955,453 - AMB_RS04560 0.67 +0.3 955,453 - AMB_RS04560 0.67 -0.2 955,453 - AMB_RS04560 0.67 -0.1 955,453 - AMB_RS04560 0.67 +0.4 955,453 - AMB_RS04560 0.67 +0.3 955,453 - AMB_RS04560 0.67 -0.0 955,569 + AMB_RS04560 0.79 -0.0 955,569 + AMB_RS04560 0.79 -2.2 955,569 + AMB_RS04560 0.79 +0.2 955,570 - AMB_RS04560 0.79 +0.4 955,570 - AMB_RS04560 0.79 -0.0 955,570 - AMB_RS04560 0.79 +0.0 955,570 - AMB_RS04560 0.79 +0.4 955,587 + AMB_RS04560 0.81 +0.4 955,587 + AMB_RS04560 0.81 +0.3 955,642 - AMB_RS04560 0.86 +1.2 955,786 + -2.1 955,786 + +0.2 955,787 - +0.7 955,787 - +1.0 955,787 - -0.6 955,817 + +1.2 955,817 + -0.2 955,827 + -0.3 955,827 + +0.5 955,827 + -1.1 955,828 - -0.9 955,828 - -0.3 955,828 - -2.2 955,830 + -0.5 955,830 + -1.2 955,830 + +0.4 955,831 - +1.2 955,831 - -0.7 955,832 + +0.9 955,833 - +0.1 955,833 - -1.0 955,833 - -0.1 955,833 - -0.4 955,887 + +0.4 955,887 + -0.5 955,887 + +0.4 955,888 - -0.5 956,062 + +0.2 956,063 - -3.7 956,063 - +0.3 956,063 - +0.3 956,323 + AMB_RS04565 0.22 +1.0 956,324 - AMB_RS04565 0.22 -0.3 956,335 + AMB_RS04565 0.23 +0.0 956,336 - AMB_RS04565 0.23 -0.3 956,336 - AMB_RS04565 0.23 +0.0 956,336 - AMB_RS04565 0.23 +0.2 956,376 - AMB_RS04565 0.25 +0.3 956,557 + AMB_RS04565 0.34 +0.8 956,557 + AMB_RS04565 0.34 -2.4 956,557 + AMB_RS04565 0.34 +0.3 956,558 - AMB_RS04565 0.34 +1.0 956,558 - AMB_RS04565 0.34 +0.3 956,611 + AMB_RS04565 0.37 -1.5 956,612 - AMB_RS04565 0.37 -0.0
Or see this region's nucleotide sequence