Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03920 and AMB_RS03925 are separated by 343 nucleotides AMB_RS03925 and AMB_RS03930 are separated by 11 nucleotides AMB_RS03930 and AMB_RS03935 are separated by 8 nucleotides
AMB_RS03920: AMB_RS03920 - hypothetical protein, at 821,811 to 822,356
_RS03920
AMB_RS03925: AMB_RS03925 - glycine cleavage system protein T, at 822,700 to 823,815
_RS03925
AMB_RS03930: AMB_RS03930 - glycine cleavage system protein H, at 823,827 to 824,204
_RS03930
AMB_RS03935: AMB_RS03935 - glycine dehydrogenase, at 824,213 to 825,562
_RS03935
Position (kb) 822
823
824 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 821.761 kb on - strand at 821.798 kb on - strand at 821.931 kb on + strand, within AMB_RS03920 at 821.931 kb on + strand, within AMB_RS03920 at 821.932 kb on - strand, within AMB_RS03920 at 821.965 kb on - strand, within AMB_RS03920 at 821.965 kb on - strand, within AMB_RS03920 at 822.042 kb on + strand, within AMB_RS03920 at 822.043 kb on - strand, within AMB_RS03920 at 822.043 kb on - strand, within AMB_RS03920 at 822.133 kb on - strand, within AMB_RS03920 at 822.354 kb on + strand at 822.394 kb on - strand at 822.394 kb on - strand at 822.539 kb on + strand at 822.787 kb on + strand at 822.787 kb on + strand at 822.788 kb on - strand at 823.277 kb on - strand, within AMB_RS03925 at 823.277 kb on - strand, within AMB_RS03925 at 823.279 kb on - strand, within AMB_RS03925 at 823.420 kb on + strand, within AMB_RS03925 at 823.421 kb on - strand, within AMB_RS03925 at 823.421 kb on - strand, within AMB_RS03925 at 823.421 kb on - strand, within AMB_RS03925 at 823.696 kb on + strand, within AMB_RS03925 at 823.696 kb on + strand, within AMB_RS03925 at 823.697 kb on - strand, within AMB_RS03925 at 823.697 kb on - strand, within AMB_RS03925 at 823.697 kb on - strand, within AMB_RS03925 at 823.697 kb on - strand, within AMB_RS03925 at 823.801 kb on + strand at 823.802 kb on - strand at 823.802 kb on - strand at 823.905 kb on + strand, within AMB_RS03930 at 823.905 kb on + strand, within AMB_RS03930 at 823.906 kb on - strand, within AMB_RS03930 at 824.023 kb on - strand, within AMB_RS03930 at 824.023 kb on - strand, within AMB_RS03930 at 824.023 kb on - strand, within AMB_RS03930 at 824.176 kb on - strand at 824.185 kb on - strand at 824.202 kb on + strand at 824.203 kb on - strand at 824.203 kb on - strand at 824.203 kb on - strand at 824.203 kb on - strand at 824.219 kb on + strand at 824.220 kb on - strand at 824.504 kb on + strand, within AMB_RS03935 at 824.504 kb on + strand, within AMB_RS03935 at 824.504 kb on + strand, within AMB_RS03935 at 824.504 kb on + strand, within AMB_RS03935 at 824.504 kb on + strand, within AMB_RS03935 at 824.504 kb on + strand, within AMB_RS03935 at 824.504 kb on + strand, within AMB_RS03935 at 824.505 kb on - strand, within AMB_RS03935 at 824.505 kb on - strand, within AMB_RS03935 at 824.505 kb on - strand, within AMB_RS03935 at 824.505 kb on - strand, within AMB_RS03935 at 824.505 kb on - strand, within AMB_RS03935 at 824.506 kb on + strand, within AMB_RS03935 at 824.588 kb on - strand, within AMB_RS03935 at 824.612 kb on + strand, within AMB_RS03935 at 824.612 kb on + strand, within AMB_RS03935 at 824.612 kb on + strand, within AMB_RS03935 at 824.612 kb on + strand, within AMB_RS03935 at 824.612 kb on + strand, within AMB_RS03935 at 824.612 kb on + strand, within AMB_RS03935 at 824.612 kb on + strand, within AMB_RS03935 at 824.612 kb on + strand, within AMB_RS03935 at 824.612 kb on + strand, within AMB_RS03935 at 824.612 kb on + strand, within AMB_RS03935 at 824.613 kb on - strand, within AMB_RS03935 at 824.613 kb on - strand, within AMB_RS03935 at 824.613 kb on - strand, within AMB_RS03935 at 824.613 kb on - strand, within AMB_RS03935 at 824.613 kb on - strand, within AMB_RS03935 at 824.613 kb on - strand, within AMB_RS03935 at 824.613 kb on - strand, within AMB_RS03935 at 824.613 kb on - strand, within AMB_RS03935 at 824.613 kb on - strand, within AMB_RS03935 at 824.613 kb on - strand, within AMB_RS03935 at 824.709 kb on - strand, within AMB_RS03935
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 821,761 - -0.2 821,798 - +0.5 821,931 + AMB_RS03920 0.22 -1.2 821,931 + AMB_RS03920 0.22 +0.4 821,932 - AMB_RS03920 0.22 +0.1 821,965 - AMB_RS03920 0.28 -0.8 821,965 - AMB_RS03920 0.28 +0.4 822,042 + AMB_RS03920 0.42 -0.2 822,043 - AMB_RS03920 0.42 -0.7 822,043 - AMB_RS03920 0.42 -1.7 822,133 - AMB_RS03920 0.59 -0.6 822,354 + -0.1 822,394 - +0.1 822,394 - -1.0 822,539 + -0.4 822,787 + +0.7 822,787 + +0.9 822,788 - -0.6 823,277 - AMB_RS03925 0.52 -0.3 823,277 - AMB_RS03925 0.52 -0.2 823,279 - AMB_RS03925 0.52 +0.7 823,420 + AMB_RS03925 0.65 -0.3 823,421 - AMB_RS03925 0.65 +0.5 823,421 - AMB_RS03925 0.65 -0.7 823,421 - AMB_RS03925 0.65 -0.0 823,696 + AMB_RS03925 0.89 +2.0 823,696 + AMB_RS03925 0.89 -0.6 823,697 - AMB_RS03925 0.89 -3.2 823,697 - AMB_RS03925 0.89 -0.4 823,697 - AMB_RS03925 0.89 +0.1 823,697 - AMB_RS03925 0.89 -0.3 823,801 + -0.1 823,802 - -0.1 823,802 - -1.0 823,905 + AMB_RS03930 0.21 +0.1 823,905 + AMB_RS03930 0.21 -0.7 823,906 - AMB_RS03930 0.21 -0.5 824,023 - AMB_RS03930 0.52 -0.8 824,023 - AMB_RS03930 0.52 -0.2 824,023 - AMB_RS03930 0.52 -0.9 824,176 - -0.8 824,185 - +0.0 824,202 + +1.3 824,203 - +0.1 824,203 - -1.5 824,203 - -0.6 824,203 - +0.4 824,219 + -0.2 824,220 - -0.8 824,504 + AMB_RS03935 0.22 +0.2 824,504 + AMB_RS03935 0.22 -0.6 824,504 + AMB_RS03935 0.22 -0.3 824,504 + AMB_RS03935 0.22 +0.2 824,504 + AMB_RS03935 0.22 +0.3 824,504 + AMB_RS03935 0.22 -0.3 824,504 + AMB_RS03935 0.22 +1.4 824,505 - AMB_RS03935 0.22 +0.9 824,505 - AMB_RS03935 0.22 -0.4 824,505 - AMB_RS03935 0.22 -1.6 824,505 - AMB_RS03935 0.22 -0.3 824,505 - AMB_RS03935 0.22 +0.1 824,506 + AMB_RS03935 0.22 -1.2 824,588 - AMB_RS03935 0.28 -0.7 824,612 + AMB_RS03935 0.30 -1.2 824,612 + AMB_RS03935 0.30 +0.5 824,612 + AMB_RS03935 0.30 -0.6 824,612 + AMB_RS03935 0.30 -0.4 824,612 + AMB_RS03935 0.30 -0.2 824,612 + AMB_RS03935 0.30 -0.5 824,612 + AMB_RS03935 0.30 -0.2 824,612 + AMB_RS03935 0.30 +0.9 824,612 + AMB_RS03935 0.30 +2.0 824,612 + AMB_RS03935 0.30 -0.4 824,613 - AMB_RS03935 0.30 -0.5 824,613 - AMB_RS03935 0.30 -0.3 824,613 - AMB_RS03935 0.30 -0.8 824,613 - AMB_RS03935 0.30 +1.1 824,613 - AMB_RS03935 0.30 -0.0 824,613 - AMB_RS03935 0.30 -0.6 824,613 - AMB_RS03935 0.30 -0.3 824,613 - AMB_RS03935 0.30 -0.3 824,613 - AMB_RS03935 0.30 +0.0 824,613 - AMB_RS03935 0.30 +0.4 824,709 - AMB_RS03935 0.37 +1.4
Or see this region's nucleotide sequence