Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03845 and AMB_RS03850 are separated by 305 nucleotides AMB_RS03850 and AMB_RS03855 are separated by 66 nucleotides AMB_RS03855 and AMB_RS03860 are separated by 102 nucleotides
AMB_RS03845: AMB_RS03845 - MFS transporter, at 809,209 to 810,423
_RS03845
AMB_RS03850: AMB_RS03850 - cytochrome b561, at 810,729 to 811,418
_RS03850
AMB_RS03855: AMB_RS03855 - cytochrome c, at 811,485 to 811,946
_RS03855
AMB_RS03860: AMB_RS03860 - NADPH:quinone oxidoreductase family protein, at 812,049 to 813,020
_RS03860
Position (kb) 810
811
812 Strain fitness (log2 ratio) -2
-1
0
1 at 810.015 kb on + strand, within AMB_RS03845 at 810.015 kb on + strand, within AMB_RS03845 at 810.016 kb on - strand, within AMB_RS03845 at 810.463 kb on + strand at 810.463 kb on + strand at 810.463 kb on + strand at 810.514 kb on - strand at 810.522 kb on + strand at 810.931 kb on + strand, within AMB_RS03850 at 810.931 kb on + strand, within AMB_RS03850 at 810.932 kb on - strand, within AMB_RS03850 at 810.970 kb on + strand, within AMB_RS03850 at 810.970 kb on + strand, within AMB_RS03850 at 810.970 kb on + strand, within AMB_RS03850 at 810.971 kb on - strand, within AMB_RS03850 at 810.971 kb on - strand, within AMB_RS03850 at 810.971 kb on - strand, within AMB_RS03850 at 810.971 kb on - strand, within AMB_RS03850 at 811.039 kb on + strand, within AMB_RS03850 at 811.039 kb on + strand, within AMB_RS03850 at 811.040 kb on - strand, within AMB_RS03850 at 811.178 kb on - strand, within AMB_RS03850 at 811.225 kb on + strand, within AMB_RS03850 at 811.225 kb on + strand, within AMB_RS03850 at 811.226 kb on - strand, within AMB_RS03850 at 811.226 kb on - strand, within AMB_RS03850 at 811.486 kb on + strand at 811.486 kb on - strand at 811.487 kb on - strand at 811.487 kb on - strand at 811.711 kb on + strand, within AMB_RS03855 at 811.712 kb on - strand, within AMB_RS03855 at 811.781 kb on + strand, within AMB_RS03855 at 811.781 kb on + strand, within AMB_RS03855 at 811.782 kb on - strand, within AMB_RS03855 at 811.782 kb on - strand, within AMB_RS03855 at 811.783 kb on + strand, within AMB_RS03855 at 811.784 kb on - strand, within AMB_RS03855 at 811.840 kb on + strand, within AMB_RS03855 at 811.999 kb on - strand at 811.999 kb on - strand at 811.999 kb on - strand at 812.002 kb on - strand at 812.002 kb on - strand at 812.002 kb on - strand at 812.004 kb on - strand at 812.113 kb on - strand at 812.240 kb on - strand, within AMB_RS03860 at 812.240 kb on - strand, within AMB_RS03860 at 812.240 kb on - strand, within AMB_RS03860 at 812.242 kb on + strand, within AMB_RS03860 at 812.389 kb on + strand, within AMB_RS03860 at 812.389 kb on + strand, within AMB_RS03860 at 812.390 kb on - strand, within AMB_RS03860 at 812.390 kb on - strand, within AMB_RS03860
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 810,015 + AMB_RS03845 0.66 +0.5 810,015 + AMB_RS03845 0.66 -0.3 810,016 - AMB_RS03845 0.66 -0.4 810,463 + -1.5 810,463 + -0.3 810,463 + -0.9 810,514 - -1.0 810,522 + -0.0 810,931 + AMB_RS03850 0.29 -1.9 810,931 + AMB_RS03850 0.29 -1.1 810,932 - AMB_RS03850 0.29 -1.6 810,970 + AMB_RS03850 0.35 +0.4 810,970 + AMB_RS03850 0.35 -0.1 810,970 + AMB_RS03850 0.35 +0.1 810,971 - AMB_RS03850 0.35 +0.1 810,971 - AMB_RS03850 0.35 -0.6 810,971 - AMB_RS03850 0.35 -0.7 810,971 - AMB_RS03850 0.35 -0.4 811,039 + AMB_RS03850 0.45 -0.1 811,039 + AMB_RS03850 0.45 +0.3 811,040 - AMB_RS03850 0.45 +0.0 811,178 - AMB_RS03850 0.65 +0.5 811,225 + AMB_RS03850 0.72 -0.4 811,225 + AMB_RS03850 0.72 -1.6 811,226 - AMB_RS03850 0.72 +0.4 811,226 - AMB_RS03850 0.72 -0.0 811,486 + +0.3 811,486 - +0.2 811,487 - -0.0 811,487 - -0.6 811,711 + AMB_RS03855 0.49 +0.3 811,712 - AMB_RS03855 0.49 -0.4 811,781 + AMB_RS03855 0.64 -0.1 811,781 + AMB_RS03855 0.64 -0.1 811,782 - AMB_RS03855 0.64 +0.4 811,782 - AMB_RS03855 0.64 +0.3 811,783 + AMB_RS03855 0.65 -0.4 811,784 - AMB_RS03855 0.65 -0.6 811,840 + AMB_RS03855 0.77 -0.9 811,999 - -0.4 811,999 - -0.6 811,999 - -0.0 812,002 - +1.4 812,002 - +0.4 812,002 - -0.5 812,004 - -0.1 812,113 - -0.5 812,240 - AMB_RS03860 0.20 +0.1 812,240 - AMB_RS03860 0.20 -2.2 812,240 - AMB_RS03860 0.20 -0.9 812,242 + AMB_RS03860 0.20 -0.4 812,389 + AMB_RS03860 0.35 -0.2 812,389 + AMB_RS03860 0.35 -0.4 812,390 - AMB_RS03860 0.35 -0.2 812,390 - AMB_RS03860 0.35 -0.9
Or see this region's nucleotide sequence