Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03635 and AMB_RS03640 overlap by 20 nucleotides AMB_RS03640 and AMB_RS03645 are separated by 134 nucleotides
AMB_RS03635: AMB_RS03635 - tetratricopeptide repeat protein, at 765,863 to 768,139
_RS03635
AMB_RS03640: AMB_RS03640 - CoA transferase, at 768,120 to 769,226
_RS03640
AMB_RS03645: AMB_RS03645 - enoyl-CoA hydratase, at 769,361 to 770,143
_RS03645
Position (kb) 768
769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 767.243 kb on + strand, within AMB_RS03635 at 767.575 kb on + strand, within AMB_RS03635 at 767.575 kb on + strand, within AMB_RS03635 at 767.575 kb on + strand, within AMB_RS03635 at 767.576 kb on - strand, within AMB_RS03635 at 767.576 kb on - strand, within AMB_RS03635 at 767.576 kb on - strand, within AMB_RS03635 at 767.594 kb on + strand, within AMB_RS03635 at 767.595 kb on - strand, within AMB_RS03635 at 768.032 kb on + strand at 768.517 kb on + strand, within AMB_RS03640 at 768.517 kb on + strand, within AMB_RS03640 at 768.517 kb on + strand, within AMB_RS03640 at 768.518 kb on - strand, within AMB_RS03640 at 768.518 kb on - strand, within AMB_RS03640 at 768.518 kb on - strand, within AMB_RS03640 at 768.526 kb on + strand, within AMB_RS03640 at 768.527 kb on - strand, within AMB_RS03640 at 768.527 kb on - strand, within AMB_RS03640 at 768.527 kb on - strand, within AMB_RS03640 at 768.676 kb on - strand, within AMB_RS03640 at 768.799 kb on + strand, within AMB_RS03640 at 768.799 kb on + strand, within AMB_RS03640 at 768.799 kb on + strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.800 kb on - strand, within AMB_RS03640 at 768.848 kb on - strand, within AMB_RS03640 at 769.048 kb on + strand, within AMB_RS03640 at 769.048 kb on + strand, within AMB_RS03640 at 769.048 kb on + strand, within AMB_RS03640 at 769.049 kb on - strand, within AMB_RS03640 at 769.049 kb on - strand, within AMB_RS03640 at 769.177 kb on + strand at 769.177 kb on + strand at 769.177 kb on + strand at 769.177 kb on + strand at 769.177 kb on + strand at 769.177 kb on + strand at 769.178 kb on - strand at 769.178 kb on - strand at 769.178 kb on - strand at 769.178 kb on - strand at 769.178 kb on - strand at 769.178 kb on - strand at 769.231 kb on + strand at 769.231 kb on + strand at 769.231 kb on + strand at 769.231 kb on + strand at 769.231 kb on + strand at 769.232 kb on - strand at 769.232 kb on - strand at 769.232 kb on - strand at 769.458 kb on + strand, within AMB_RS03645 at 769.458 kb on + strand, within AMB_RS03645 at 769.459 kb on - strand, within AMB_RS03645 at 769.662 kb on + strand, within AMB_RS03645 at 769.663 kb on - strand, within AMB_RS03645 at 769.701 kb on + strand, within AMB_RS03645 at 769.701 kb on + strand, within AMB_RS03645 at 769.702 kb on - strand, within AMB_RS03645 at 769.702 kb on - strand, within AMB_RS03645 at 769.718 kb on - strand, within AMB_RS03645 at 769.718 kb on - strand, within AMB_RS03645 at 769.718 kb on - strand, within AMB_RS03645 at 770.131 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 767,243 + AMB_RS03635 0.61 -0.4 767,575 + AMB_RS03635 0.75 -0.7 767,575 + AMB_RS03635 0.75 +0.5 767,575 + AMB_RS03635 0.75 +0.2 767,576 - AMB_RS03635 0.75 -1.5 767,576 - AMB_RS03635 0.75 +0.1 767,576 - AMB_RS03635 0.75 +0.6 767,594 + AMB_RS03635 0.76 +0.3 767,595 - AMB_RS03635 0.76 -0.6 768,032 + +0.2 768,517 + AMB_RS03640 0.36 +0.1 768,517 + AMB_RS03640 0.36 -0.2 768,517 + AMB_RS03640 0.36 -0.4 768,518 - AMB_RS03640 0.36 +1.1 768,518 - AMB_RS03640 0.36 +0.0 768,518 - AMB_RS03640 0.36 +0.6 768,526 + AMB_RS03640 0.37 -1.7 768,527 - AMB_RS03640 0.37 -0.4 768,527 - AMB_RS03640 0.37 +1.0 768,527 - AMB_RS03640 0.37 -0.4 768,676 - AMB_RS03640 0.50 +0.7 768,799 + AMB_RS03640 0.61 +0.8 768,799 + AMB_RS03640 0.61 +0.1 768,799 + AMB_RS03640 0.61 -1.0 768,800 - AMB_RS03640 0.61 -1.2 768,800 - AMB_RS03640 0.61 -0.4 768,800 - AMB_RS03640 0.61 +0.5 768,800 - AMB_RS03640 0.61 -0.5 768,800 - AMB_RS03640 0.61 +0.1 768,800 - AMB_RS03640 0.61 +2.7 768,800 - AMB_RS03640 0.61 -0.4 768,848 - AMB_RS03640 0.66 +0.1 769,048 + AMB_RS03640 0.84 -0.7 769,048 + AMB_RS03640 0.84 +0.2 769,048 + AMB_RS03640 0.84 -0.2 769,049 - AMB_RS03640 0.84 +0.1 769,049 - AMB_RS03640 0.84 +0.2 769,177 + -0.3 769,177 + -0.5 769,177 + +1.2 769,177 + -0.2 769,177 + -0.2 769,177 + -0.2 769,178 - -0.4 769,178 - -0.2 769,178 - +0.8 769,178 - -0.6 769,178 - -0.7 769,178 - -0.9 769,231 + +0.1 769,231 + -0.1 769,231 + -0.2 769,231 + +0.1 769,231 + -0.7 769,232 - -0.4 769,232 - +0.2 769,232 - +0.1 769,458 + AMB_RS03645 0.12 -0.9 769,458 + AMB_RS03645 0.12 -0.3 769,459 - AMB_RS03645 0.13 +0.1 769,662 + AMB_RS03645 0.38 -0.3 769,663 - AMB_RS03645 0.39 -0.0 769,701 + AMB_RS03645 0.43 -0.1 769,701 + AMB_RS03645 0.43 -0.2 769,702 - AMB_RS03645 0.44 -0.3 769,702 - AMB_RS03645 0.44 -3.3 769,718 - AMB_RS03645 0.46 -1.1 769,718 - AMB_RS03645 0.46 -0.7 769,718 - AMB_RS03645 0.46 -0.5 770,131 + -1.1
Or see this region's nucleotide sequence