Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03570

Experiment: 30_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03565 and AMB_RS03570 are separated by 237 nucleotidesAMB_RS03570 and AMB_RS03575 are separated by 79 nucleotides AMB_RS03565: AMB_RS03565 - pyridoxal phosphate-dependent aminotransferase, at 747,699 to 748,859 _RS03565 AMB_RS03570: AMB_RS03570 - P-II family nitrogen regulator, at 749,097 to 749,435 _RS03570 AMB_RS03575: AMB_RS03575 - type I glutamate--ammonia ligase, at 749,515 to 750,927 _RS03575 Position (kb) 749 750Strain fitness (log2 ratio) -2 -1 0 1 2at 748.243 kb on + strand, within AMB_RS03565at 748.244 kb on - strand, within AMB_RS03565at 748.258 kb on + strand, within AMB_RS03565at 748.279 kb on + strand, within AMB_RS03565at 748.279 kb on + strand, within AMB_RS03565at 748.279 kb on + strand, within AMB_RS03565at 748.279 kb on + strand, within AMB_RS03565at 748.280 kb on - strand, within AMB_RS03565at 748.280 kb on - strand, within AMB_RS03565at 748.280 kb on - strand, within AMB_RS03565at 748.280 kb on - strand, within AMB_RS03565at 748.280 kb on - strand, within AMB_RS03565at 748.489 kb on + strand, within AMB_RS03565at 748.489 kb on + strand, within AMB_RS03565at 748.489 kb on + strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.490 kb on - strand, within AMB_RS03565at 748.621 kb on + strand, within AMB_RS03565at 748.622 kb on - strand, within AMB_RS03565at 748.622 kb on - strand, within AMB_RS03565at 748.729 kb on - strand, within AMB_RS03565at 748.729 kb on - strand, within AMB_RS03565at 748.897 kb on + strandat 748.953 kb on - strandat 748.967 kb on - strandat 749.247 kb on + strand, within AMB_RS03570at 749.267 kb on + strand, within AMB_RS03570at 749.267 kb on + strand, within AMB_RS03570

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_3
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748,243 + AMB_RS03565 0.47 +0.4
748,244 - AMB_RS03565 0.47 -0.6
748,258 + AMB_RS03565 0.48 -0.4
748,279 + AMB_RS03565 0.50 -1.0
748,279 + AMB_RS03565 0.50 -0.9
748,279 + AMB_RS03565 0.50 -0.4
748,279 + AMB_RS03565 0.50 +0.5
748,280 - AMB_RS03565 0.50 +0.2
748,280 - AMB_RS03565 0.50 -0.3
748,280 - AMB_RS03565 0.50 -0.1
748,280 - AMB_RS03565 0.50 -0.4
748,280 - AMB_RS03565 0.50 -0.0
748,489 + AMB_RS03565 0.68 -0.4
748,489 + AMB_RS03565 0.68 +0.4
748,489 + AMB_RS03565 0.68 +0.1
748,490 - AMB_RS03565 0.68 +0.7
748,490 - AMB_RS03565 0.68 -0.1
748,490 - AMB_RS03565 0.68 -0.6
748,490 - AMB_RS03565 0.68 -0.2
748,490 - AMB_RS03565 0.68 -0.1
748,490 - AMB_RS03565 0.68 -0.2
748,490 - AMB_RS03565 0.68 +1.8
748,490 - AMB_RS03565 0.68 -0.3
748,490 - AMB_RS03565 0.68 +0.1
748,621 + AMB_RS03565 0.79 -0.2
748,622 - AMB_RS03565 0.80 +0.2
748,622 - AMB_RS03565 0.80 -0.2
748,729 - AMB_RS03565 0.89 -1.0
748,729 - AMB_RS03565 0.89 -0.9
748,897 + -0.6
748,953 - +1.0
748,967 - -1.5
749,247 + AMB_RS03570 0.44 -1.9
749,267 + AMB_RS03570 0.50 -1.2
749,267 + AMB_RS03570 0.50 +0.4

Or see this region's nucleotide sequence