Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02820 and AMB_RS02825 are separated by 130 nucleotides AMB_RS02825 and AMB_RS02830 are separated by 81 nucleotides AMB_RS02830 and AMB_RS02835 are separated by 35 nucleotides
AMB_RS02820: AMB_RS02820 - pyrroline-5-carboxylate reductase, at 592,295 to 593,086
_RS02820
AMB_RS02825: AMB_RS02825 - phasin, at 593,217 to 593,654
_RS02825
AMB_RS02830: AMB_RS02830 - chromosome partitioning protein ParA, at 593,736 to 594,359
_RS02830
AMB_RS02835: AMB_RS02835 - two-component sensor histidine kinase, at 594,395 to 595,720
_RS02835
Position (kb) 593
594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 593.084 kb on + strand at 593.106 kb on - strand at 593.109 kb on + strand at 593.120 kb on + strand at 593.120 kb on + strand at 593.120 kb on + strand at 593.120 kb on + strand at 593.120 kb on + strand at 593.120 kb on + strand at 593.120 kb on + strand at 593.120 kb on + strand at 593.120 kb on + strand at 593.120 kb on + strand at 593.121 kb on - strand at 593.121 kb on - strand at 593.121 kb on - strand at 593.121 kb on - strand at 593.121 kb on - strand at 593.124 kb on + strand at 593.124 kb on + strand at 593.136 kb on + strand at 593.137 kb on - strand at 593.172 kb on - strand at 593.191 kb on + strand at 593.191 kb on + strand at 593.191 kb on + strand at 593.191 kb on + strand at 593.192 kb on - strand at 593.192 kb on - strand at 593.192 kb on - strand at 593.192 kb on - strand at 593.213 kb on + strand at 593.213 kb on + strand at 593.213 kb on + strand at 593.213 kb on + strand at 593.213 kb on + strand at 593.213 kb on + strand at 593.213 kb on + strand at 593.213 kb on + strand at 593.213 kb on + strand at 593.214 kb on - strand at 593.214 kb on - strand at 593.214 kb on - strand at 593.214 kb on - strand at 593.214 kb on - strand at 593.214 kb on - strand at 593.214 kb on - strand at 593.214 kb on - strand at 593.214 kb on - strand at 593.265 kb on + strand, within AMB_RS02825 at 593.265 kb on + strand, within AMB_RS02825 at 593.266 kb on - strand, within AMB_RS02825 at 593.266 kb on - strand, within AMB_RS02825 at 593.266 kb on - strand, within AMB_RS02825 at 593.652 kb on + strand at 593.652 kb on + strand at 593.652 kb on + strand at 593.653 kb on - strand at 593.653 kb on - strand at 593.653 kb on - strand at 593.737 kb on + strand at 593.737 kb on + strand at 593.738 kb on - strand at 593.738 kb on - strand at 593.782 kb on + strand at 593.783 kb on - strand at 593.783 kb on - strand at 593.783 kb on - strand at 593.783 kb on - strand at 593.843 kb on + strand, within AMB_RS02830 at 593.844 kb on - strand, within AMB_RS02830 at 593.845 kb on + strand, within AMB_RS02830 at 593.845 kb on + strand, within AMB_RS02830 at 593.845 kb on + strand, within AMB_RS02830 at 593.845 kb on + strand, within AMB_RS02830 at 593.846 kb on - strand, within AMB_RS02830 at 593.953 kb on - strand, within AMB_RS02830 at 594.075 kb on - strand, within AMB_RS02830 at 594.336 kb on - strand at 594.336 kb on - strand at 594.336 kb on - strand at 594.336 kb on - strand at 594.348 kb on + strand at 594.378 kb on - strand at 594.393 kb on + strand at 594.394 kb on - strand at 594.394 kb on - strand at 594.394 kb on - strand at 594.394 kb on - strand at 594.447 kb on - strand at 594.890 kb on + strand, within AMB_RS02835 at 595.166 kb on - strand, within AMB_RS02835 at 595.233 kb on + strand, within AMB_RS02835 at 595.233 kb on + strand, within AMB_RS02835 at 595.233 kb on + strand, within AMB_RS02835 at 595.234 kb on - strand, within AMB_RS02835 at 595.234 kb on - strand, within AMB_RS02835
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 593,084 + -0.1 593,106 - -0.5 593,109 + +0.9 593,120 + -0.1 593,120 + -1.8 593,120 + -0.9 593,120 + -0.2 593,120 + -0.0 593,120 + -0.0 593,120 + -0.1 593,120 + +0.2 593,120 + -0.6 593,120 + -0.0 593,121 - -0.3 593,121 - +1.0 593,121 - +0.7 593,121 - +0.6 593,121 - +0.0 593,124 + +1.2 593,124 + -1.8 593,136 + -0.6 593,137 - -0.7 593,172 - -0.6 593,191 + -0.4 593,191 + +0.3 593,191 + -0.2 593,191 + +0.1 593,192 - -1.4 593,192 - -0.6 593,192 - -0.2 593,192 - -1.0 593,213 + +0.1 593,213 + -0.9 593,213 + -0.4 593,213 + -0.3 593,213 + -0.9 593,213 + -0.2 593,213 + -1.0 593,213 + -0.7 593,213 + -1.1 593,214 - +0.7 593,214 - -0.4 593,214 - -0.4 593,214 - -0.3 593,214 - -0.7 593,214 - +0.2 593,214 - -0.2 593,214 - -0.4 593,214 - -1.4 593,265 + AMB_RS02825 0.11 -1.0 593,265 + AMB_RS02825 0.11 +0.3 593,266 - AMB_RS02825 0.11 -2.2 593,266 - AMB_RS02825 0.11 -0.3 593,266 - AMB_RS02825 0.11 +0.9 593,652 + -0.7 593,652 + +0.3 593,652 + -0.6 593,653 - +0.8 593,653 - -0.4 593,653 - -0.5 593,737 + +0.4 593,737 + +1.4 593,738 - +0.5 593,738 - -0.4 593,782 + -0.7 593,783 - +0.4 593,783 - +0.2 593,783 - -0.6 593,783 - -0.3 593,843 + AMB_RS02830 0.17 +0.1 593,844 - AMB_RS02830 0.17 -0.4 593,845 + AMB_RS02830 0.17 -2.6 593,845 + AMB_RS02830 0.17 -1.0 593,845 + AMB_RS02830 0.17 +0.4 593,845 + AMB_RS02830 0.17 +0.6 593,846 - AMB_RS02830 0.18 -0.3 593,953 - AMB_RS02830 0.35 +0.1 594,075 - AMB_RS02830 0.54 -0.4 594,336 - -0.3 594,336 - -0.2 594,336 - +0.3 594,336 - +0.5 594,348 + -0.4 594,378 - -0.0 594,393 + -3.1 594,394 - -1.0 594,394 - -0.2 594,394 - -0.1 594,394 - -0.4 594,447 - +0.2 594,890 + AMB_RS02835 0.37 -3.1 595,166 - AMB_RS02835 0.58 -0.2 595,233 + AMB_RS02835 0.63 -1.1 595,233 + AMB_RS02835 0.63 +0.4 595,233 + AMB_RS02835 0.63 +0.4 595,234 - AMB_RS02835 0.63 +0.4 595,234 - AMB_RS02835 0.63 -0.6
Or see this region's nucleotide sequence