Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02620 and AMB_RS02625 are separated by 17 nucleotides AMB_RS02625 and AMB_RS02630 are separated by 66 nucleotides
AMB_RS02620: AMB_RS02620 - GNAT family N-acetyltransferase, at 545,434 to 546,417
_RS02620
AMB_RS02625: AMB_RS02625 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 546,435 to 547,667
_RS02625
AMB_RS02630: AMB_RS02630 - parvulin peptidyl-prolyl isomerase, at 547,734 to 548,696
_RS02630
Position (kb) 546
547
548 Strain fitness (log2 ratio) -2
-1
0
1
2 at 545.435 kb on + strand at 545.435 kb on + strand at 545.435 kb on + strand at 545.436 kb on - strand at 545.436 kb on - strand at 545.437 kb on + strand at 545.437 kb on + strand at 545.437 kb on + strand at 545.561 kb on - strand, within AMB_RS02620 at 545.573 kb on + strand, within AMB_RS02620 at 545.573 kb on + strand, within AMB_RS02620 at 545.573 kb on + strand, within AMB_RS02620 at 545.573 kb on + strand, within AMB_RS02620 at 545.574 kb on - strand, within AMB_RS02620 at 545.574 kb on - strand, within AMB_RS02620 at 545.574 kb on - strand, within AMB_RS02620 at 545.574 kb on - strand, within AMB_RS02620 at 545.603 kb on + strand, within AMB_RS02620 at 545.603 kb on + strand, within AMB_RS02620 at 545.603 kb on + strand, within AMB_RS02620 at 545.603 kb on + strand, within AMB_RS02620 at 545.604 kb on - strand, within AMB_RS02620 at 545.604 kb on - strand, within AMB_RS02620 at 545.632 kb on + strand, within AMB_RS02620 at 546.063 kb on - strand, within AMB_RS02620 at 546.252 kb on - strand, within AMB_RS02620 at 546.252 kb on - strand, within AMB_RS02620 at 546.252 kb on - strand, within AMB_RS02620 at 546.252 kb on - strand, within AMB_RS02620 at 546.252 kb on - strand, within AMB_RS02620 at 547.693 kb on - strand at 547.736 kb on - strand at 547.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 545,435 + +0.8 545,435 + -0.5 545,435 + -0.3 545,436 - +0.8 545,436 - -0.3 545,437 + +0.0 545,437 + +0.3 545,437 + -0.0 545,561 - AMB_RS02620 0.13 -0.0 545,573 + AMB_RS02620 0.14 -0.2 545,573 + AMB_RS02620 0.14 +1.2 545,573 + AMB_RS02620 0.14 +0.5 545,573 + AMB_RS02620 0.14 +2.0 545,574 - AMB_RS02620 0.14 +0.4 545,574 - AMB_RS02620 0.14 -0.3 545,574 - AMB_RS02620 0.14 -0.0 545,574 - AMB_RS02620 0.14 -0.4 545,603 + AMB_RS02620 0.17 -1.0 545,603 + AMB_RS02620 0.17 -0.1 545,603 + AMB_RS02620 0.17 -0.4 545,603 + AMB_RS02620 0.17 +1.3 545,604 - AMB_RS02620 0.17 -0.3 545,604 - AMB_RS02620 0.17 +1.4 545,632 + AMB_RS02620 0.20 +1.5 546,063 - AMB_RS02620 0.64 -0.4 546,252 - AMB_RS02620 0.83 -1.0 546,252 - AMB_RS02620 0.83 -0.7 546,252 - AMB_RS02620 0.83 -0.5 546,252 - AMB_RS02620 0.83 -0.0 546,252 - AMB_RS02620 0.83 -0.0 547,693 - -1.9 547,736 - +0.9 547,736 - -0.5
Or see this region's nucleotide sequence