Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02345 and AMB_RS02350 are separated by 4 nucleotides AMB_RS02350 and AMB_RS02355 are separated by 1 nucleotides AMB_RS02355 and AMB_RS02360 are separated by 65 nucleotides AMB_RS02360 and AMB_RS02365 are separated by 64 nucleotides AMB_RS02365 and AMB_RS02370 overlap by 1 nucleotides
AMB_RS02345: AMB_RS02345 - hypothetical protein, at 495,471 to 495,818
_RS02345
AMB_RS02350: AMB_RS02350 - hypothetical protein, at 495,823 to 496,104
_RS02350
AMB_RS02355: AMB_RS02355 - DUF1566 domain-containing protein, at 496,106 to 496,639
_RS02355
AMB_RS02360: AMB_RS02360 - DUF1566 domain-containing protein, at 496,705 to 497,247
_RS02360
AMB_RS02365: AMB_RS02365 - hypothetical protein, at 497,312 to 497,668
_RS02365
AMB_RS02370: AMB_RS02370 - reverse transcriptase, at 497,668 to 499,059
_RS02370
Position (kb) 496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 495.804 kb on + strand at 495.804 kb on + strand at 495.805 kb on - strand at 495.805 kb on - strand at 496.151 kb on + strand at 496.151 kb on + strand at 496.152 kb on - strand at 496.166 kb on + strand, within AMB_RS02355 at 496.166 kb on + strand, within AMB_RS02355 at 496.166 kb on + strand, within AMB_RS02355 at 496.167 kb on - strand, within AMB_RS02355 at 496.199 kb on + strand, within AMB_RS02355 at 496.200 kb on - strand, within AMB_RS02355 at 496.200 kb on - strand, within AMB_RS02355 at 496.200 kb on - strand, within AMB_RS02355 at 496.386 kb on - strand, within AMB_RS02355 at 496.386 kb on - strand, within AMB_RS02355 at 496.386 kb on - strand, within AMB_RS02355 at 496.386 kb on - strand, within AMB_RS02355 at 496.445 kb on + strand, within AMB_RS02355 at 496.445 kb on + strand, within AMB_RS02355 at 496.445 kb on + strand, within AMB_RS02355 at 496.446 kb on - strand, within AMB_RS02355 at 496.446 kb on - strand, within AMB_RS02355 at 496.446 kb on - strand, within AMB_RS02355 at 496.446 kb on - strand, within AMB_RS02355 at 496.515 kb on - strand, within AMB_RS02355 at 496.515 kb on - strand, within AMB_RS02355 at 496.771 kb on + strand, within AMB_RS02360 at 496.772 kb on - strand, within AMB_RS02360 at 496.772 kb on - strand, within AMB_RS02360 at 496.786 kb on + strand, within AMB_RS02360 at 496.786 kb on + strand, within AMB_RS02360 at 496.786 kb on + strand, within AMB_RS02360 at 496.786 kb on + strand, within AMB_RS02360 at 496.786 kb on + strand, within AMB_RS02360 at 496.787 kb on - strand, within AMB_RS02360 at 496.787 kb on - strand, within AMB_RS02360 at 496.787 kb on - strand, within AMB_RS02360 at 496.787 kb on - strand, within AMB_RS02360 at 496.787 kb on - strand, within AMB_RS02360 at 496.787 kb on - strand, within AMB_RS02360 at 496.787 kb on - strand, within AMB_RS02360 at 496.795 kb on + strand, within AMB_RS02360 at 496.795 kb on + strand, within AMB_RS02360 at 497.123 kb on - strand, within AMB_RS02360 at 497.236 kb on + strand at 497.236 kb on + strand at 497.237 kb on - strand at 497.237 kb on - strand at 497.237 kb on - strand at 497.339 kb on + strand at 497.340 kb on - strand at 497.351 kb on + strand, within AMB_RS02365 at 497.352 kb on - strand, within AMB_RS02365 at 497.391 kb on - strand, within AMB_RS02365 at 497.588 kb on + strand, within AMB_RS02365 at 497.588 kb on + strand, within AMB_RS02365 at 497.589 kb on - strand, within AMB_RS02365 at 497.589 kb on - strand, within AMB_RS02365 at 497.648 kb on + strand at 497.648 kb on + strand at 497.843 kb on + strand, within AMB_RS02370 at 497.843 kb on + strand, within AMB_RS02370 at 497.844 kb on - strand, within AMB_RS02370 at 497.844 kb on - strand, within AMB_RS02370 at 497.995 kb on + strand, within AMB_RS02370 at 497.995 kb on + strand, within AMB_RS02370 at 497.996 kb on - strand, within AMB_RS02370 at 497.996 kb on - strand, within AMB_RS02370 at 497.996 kb on - strand, within AMB_RS02370 at 497.998 kb on + strand, within AMB_RS02370 at 497.998 kb on + strand, within AMB_RS02370 at 497.999 kb on - strand, within AMB_RS02370 at 497.999 kb on - strand, within AMB_RS02370 at 498.194 kb on + strand, within AMB_RS02370 at 498.197 kb on + strand, within AMB_RS02370 at 498.197 kb on + strand, within AMB_RS02370 at 498.197 kb on + strand, within AMB_RS02370 at 498.197 kb on + strand, within AMB_RS02370 at 498.197 kb on + strand, within AMB_RS02370 at 498.198 kb on - strand, within AMB_RS02370 at 498.198 kb on - strand, within AMB_RS02370 at 498.198 kb on - strand, within AMB_RS02370 at 498.198 kb on - strand, within AMB_RS02370 at 498.198 kb on - strand, within AMB_RS02370 at 498.203 kb on - strand, within AMB_RS02370
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 495,804 + -0.2 495,804 + -0.6 495,805 - -1.4 495,805 - -1.0 496,151 + -0.4 496,151 + +0.4 496,152 - -0.0 496,166 + AMB_RS02355 0.11 +1.0 496,166 + AMB_RS02355 0.11 +0.8 496,166 + AMB_RS02355 0.11 -0.9 496,167 - AMB_RS02355 0.11 +0.2 496,199 + AMB_RS02355 0.17 -1.4 496,200 - AMB_RS02355 0.18 +0.1 496,200 - AMB_RS02355 0.18 -1.8 496,200 - AMB_RS02355 0.18 +1.2 496,386 - AMB_RS02355 0.52 +0.3 496,386 - AMB_RS02355 0.52 -1.9 496,386 - AMB_RS02355 0.52 -0.0 496,386 - AMB_RS02355 0.52 -0.8 496,445 + AMB_RS02355 0.63 -1.1 496,445 + AMB_RS02355 0.63 +0.0 496,445 + AMB_RS02355 0.63 -0.3 496,446 - AMB_RS02355 0.64 +1.7 496,446 - AMB_RS02355 0.64 +0.9 496,446 - AMB_RS02355 0.64 -0.4 496,446 - AMB_RS02355 0.64 -0.1 496,515 - AMB_RS02355 0.77 -0.8 496,515 - AMB_RS02355 0.77 -1.1 496,771 + AMB_RS02360 0.12 -0.4 496,772 - AMB_RS02360 0.12 -0.8 496,772 - AMB_RS02360 0.12 +0.0 496,786 + AMB_RS02360 0.15 -2.9 496,786 + AMB_RS02360 0.15 -0.6 496,786 + AMB_RS02360 0.15 +2.2 496,786 + AMB_RS02360 0.15 +0.2 496,786 + AMB_RS02360 0.15 +0.1 496,787 - AMB_RS02360 0.15 +0.3 496,787 - AMB_RS02360 0.15 -0.5 496,787 - AMB_RS02360 0.15 +0.3 496,787 - AMB_RS02360 0.15 -0.7 496,787 - AMB_RS02360 0.15 -0.5 496,787 - AMB_RS02360 0.15 -0.4 496,787 - AMB_RS02360 0.15 -0.5 496,795 + AMB_RS02360 0.17 -0.2 496,795 + AMB_RS02360 0.17 +1.1 497,123 - AMB_RS02360 0.77 -1.5 497,236 + -0.2 497,236 + +0.0 497,237 - -0.7 497,237 - -0.6 497,237 - +1.5 497,339 + -0.7 497,340 - -1.2 497,351 + AMB_RS02365 0.11 -0.6 497,352 - AMB_RS02365 0.11 -0.4 497,391 - AMB_RS02365 0.22 -1.4 497,588 + AMB_RS02365 0.77 +0.4 497,588 + AMB_RS02365 0.77 +0.0 497,589 - AMB_RS02365 0.78 +0.9 497,589 - AMB_RS02365 0.78 -1.0 497,648 + -0.3 497,648 + -0.4 497,843 + AMB_RS02370 0.13 -0.5 497,843 + AMB_RS02370 0.13 -0.4 497,844 - AMB_RS02370 0.13 -0.9 497,844 - AMB_RS02370 0.13 +0.6 497,995 + AMB_RS02370 0.23 -0.2 497,995 + AMB_RS02370 0.23 -1.0 497,996 - AMB_RS02370 0.24 -0.5 497,996 - AMB_RS02370 0.24 -0.5 497,996 - AMB_RS02370 0.24 -0.3 497,998 + AMB_RS02370 0.24 -0.5 497,998 + AMB_RS02370 0.24 -0.0 497,999 - AMB_RS02370 0.24 -0.3 497,999 - AMB_RS02370 0.24 +0.4 498,194 + AMB_RS02370 0.38 -0.5 498,197 + AMB_RS02370 0.38 +0.4 498,197 + AMB_RS02370 0.38 -1.1 498,197 + AMB_RS02370 0.38 -0.0 498,197 + AMB_RS02370 0.38 +0.5 498,197 + AMB_RS02370 0.38 +0.4 498,198 - AMB_RS02370 0.38 -0.1 498,198 - AMB_RS02370 0.38 -0.0 498,198 - AMB_RS02370 0.38 +0.0 498,198 - AMB_RS02370 0.38 -0.4 498,198 - AMB_RS02370 0.38 -1.0 498,203 - AMB_RS02370 0.38 -0.8
Or see this region's nucleotide sequence